Wall clock time and date at job start Tue Mar 31 2020 15:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45207 * 109.47467 * 2 1 4 4 C 1.34226 * 116.99868 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00550 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99600 * 180.27345 * 4 3 2 7 7 C 1.50702 * 109.47070 * 179.72370 * 6 4 3 8 8 N 1.32272 * 120.49438 * 90.00072 * 7 6 4 9 9 C 1.31784 * 120.90104 * 179.97438 * 8 7 6 10 10 N 1.31816 * 121.93137 * 0.02562 * 9 8 7 11 11 C 1.32242 * 120.89759 * 359.97438 * 10 9 8 12 12 C 1.39257 * 120.49396 * 269.71888 * 7 6 4 13 13 N 1.39791 * 120.87394 * 0.02562 * 12 7 6 14 14 C 1.38292 * 119.99597 * 186.01985 * 13 12 7 15 15 C 1.38995 * 120.00178 * 60.47261 * 14 13 12 16 16 H 1.08008 * 120.00236 * 199.55186 * 15 14 13 17 17 C 1.40833 * 120.00398 * 19.55499 * 15 14 13 18 18 N 1.30340 * 119.99506 * 9.43249 * 17 15 14 19 19 Si 1.86792 * 120.00174 * 189.43759 * 17 15 14 20 20 H 1.48502 * 109.47478 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47273 * 119.99803 * 19 17 15 22 22 H 1.48500 * 109.47131 * 239.99599 * 19 17 15 23 23 C 1.41172 * 119.99584 * 240.47111 * 14 13 12 24 24 C 1.43200 * 119.99505 * 174.75246 * 23 14 13 25 25 N 9.21060 * 130.73079 * 73.38269 * 2 1 3 26 26 C 1.43194 * 119.99848 * 354.75720 * 23 14 13 27 27 N 5.12636 * 123.89559 * 89.83545 * 2 1 3 28 28 H 1.09002 * 109.47049 * 300.00486 * 1 2 3 29 29 H 1.09000 * 109.46792 * 60.00053 * 1 2 3 30 30 H 1.08992 * 109.47175 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47458 * 239.99864 * 2 1 3 32 32 H 1.08998 * 109.47226 * 119.99643 * 2 1 3 33 33 H 1.09007 * 109.47054 * 299.72338 * 6 4 3 34 34 H 1.08995 * 109.47090 * 59.71946 * 6 4 3 35 35 H 1.07998 * 119.03385 * 179.97438 * 9 8 7 36 36 H 1.08001 * 120.49402 * 180.02562 * 11 10 9 37 37 H 0.96993 * 120.00466 * 6.01975 * 13 12 7 38 38 H 0.96995 * 119.99945 * 184.98926 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0057 7 6 5.4258 2.8584 0.0106 8 7 6.0999 2.8267 -1.1270 9 6 7.4160 2.7582 -1.1321 10 7 8.1163 2.7179 -0.0161 11 6 7.5176 2.7456 1.1627 12 6 6.1277 2.8236 1.2128 13 7 5.4548 2.8605 2.4376 14 6 6.1708 2.9507 3.6173 15 6 6.9957 4.0455 3.8477 16 1 7.7800 3.9844 4.5877 17 6 6.8087 5.2344 3.1163 18 7 5.7565 5.3756 2.3602 19 14 8.0687 6.6087 3.2297 20 1 9.1623 6.2031 4.1489 21 1 8.6295 6.8787 1.8814 22 1 7.4159 7.8371 3.7494 23 6 6.0638 1.9309 4.5876 24 6 6.8885 1.9667 5.7577 25 7 7.5399 1.9960 6.6881 26 6 5.1308 0.8607 4.4015 27 7 4.3888 0.0122 4.2551 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5879 3.4722 -0.8839 34 1 3.5818 3.4668 0.8960 35 1 7.9359 2.7336 -2.0784 36 1 8.0978 2.7126 2.0730 37 1 4.4859 2.8227 2.4600 38 1 5.6632 6.1627 1.8010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:53 Heat of formation + Delta-G solvation = 17.352764 kcal Electronic energy + Delta-G solvation = -27411.514204 eV Core-core repulsion = 23447.351608 eV Total energy + Delta-G solvation = -3964.162597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92942 -40.02602 -37.76769 -36.58245 -35.46264 -34.82487 -34.22843 -33.62386 -31.94579 -31.63604 -29.85313 -28.28836 -27.31697 -24.06743 -23.61571 -22.57074 -21.48591 -20.79884 -19.21095 -18.02744 -17.64715 -17.38915 -16.66140 -16.51909 -16.34568 -16.00185 -15.82251 -15.09580 -14.30833 -14.24962 -13.86841 -13.34636 -13.22591 -12.96951 -12.87499 -12.71094 -12.64357 -12.43569 -12.36639 -11.97434 -11.81939 -11.76894 -11.70046 -11.63924 -11.61635 -11.25437 -11.05897 -10.95894 -10.81051 -10.49338 -10.48278 -10.37199 -10.24846 -10.04665 -8.78384 -8.45000 -7.94909 -7.00682 -5.60636 1.42371 1.55430 2.12026 2.36874 2.62782 2.72531 2.76417 2.77754 3.30491 3.65854 3.78483 3.96939 4.06549 4.25447 4.32186 4.38203 4.72391 4.81576 4.87200 4.89684 4.97141 5.04489 5.21202 5.24707 5.39706 5.45639 5.60468 5.62488 5.71515 5.78826 5.88132 6.04261 6.19835 6.27133 6.52977 6.72174 6.90328 7.07194 7.40019 7.50134 7.58790 7.88749 7.99062 8.19206 8.63370 8.85562 9.00353 9.03487 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.005354 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.742366 B = 5228.846598 C = 6617.314018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.491 6.491 6 C -0.054 4.054 7 C 0.101 3.899 8 N -0.476 5.476 9 C 0.211 3.789 10 N -0.482 5.482 11 C 0.087 3.913 12 C 0.184 3.816 13 N -0.642 5.642 14 C 0.373 3.627 15 C -0.377 4.377 16 H 0.115 0.885 17 C 0.072 3.928 18 N -0.722 5.722 19 Si 0.922 3.078 20 H -0.245 1.245 21 H -0.260 1.260 22 H -0.262 1.262 23 C -0.305 4.305 24 C 0.324 3.676 25 N -0.527 5.527 26 C 0.305 3.695 27 N -0.525 5.525 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.185 0.815 36 H 0.174 0.826 37 H 0.402 0.598 38 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 4.128 -9.581 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.277 6.277 4 C 0.304 3.696 5 O -0.377 6.377 6 C -0.092 4.092 7 C -0.051 4.051 8 N -0.189 5.189 9 C -0.078 4.078 10 N -0.194 5.194 11 C -0.086 4.086 12 C 0.073 3.927 13 N -0.262 5.262 14 C 0.269 3.731 15 C -0.404 4.404 16 H 0.133 0.867 17 C -0.159 4.159 18 N -0.341 5.341 19 Si 0.743 3.257 20 H -0.168 1.168 21 H -0.184 1.184 22 H -0.186 1.186 23 C -0.323 4.323 24 C 0.015 3.985 25 N -0.209 5.209 26 C -0.003 4.003 27 N -0.207 5.207 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.202 0.798 36 H 0.191 0.809 37 H 0.239 0.761 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.253 2.689 -9.255 10.976 hybrid contribution -0.392 0.847 0.382 1.008 sum -5.644 3.535 -8.872 11.094 Atomic orbital electron populations 1.21790 0.92721 1.02837 1.03417 1.23013 0.95193 0.80257 1.02775 1.86464 1.24442 1.32422 1.84400 1.23514 0.80602 0.92507 0.73009 1.90721 1.60247 1.42879 1.43822 1.19962 0.90175 0.91776 1.07300 1.19976 0.94078 1.03537 0.87510 1.67782 1.10683 1.11251 1.29184 1.24243 0.86337 1.00626 0.96623 1.68161 1.41524 1.11064 0.98674 1.23050 0.90232 0.98596 0.96706 1.19032 0.93941 0.93142 0.86542 1.41342 1.08007 1.75526 1.01364 1.16808 0.85676 0.88909 0.81710 1.20384 1.12598 0.92826 1.14609 0.86699 1.26487 0.95944 1.00863 0.92602 1.69461 1.22545 1.28509 1.13545 0.85906 0.80373 0.78698 0.80702 1.16793 1.18398 1.18615 1.12927 1.15663 1.03627 1.00053 1.24646 0.91180 0.91651 0.90990 1.81089 1.15280 1.11404 1.13092 1.25197 0.91514 0.91403 0.92164 1.81104 1.16005 1.12971 1.10643 0.91382 0.91607 0.90380 0.91414 0.90943 0.85777 0.85977 0.79834 0.80905 0.76084 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.77 6.19 37.16 0.23 1.00 16 3 O -0.36 -5.12 10.22 -39.25 -0.40 -5.52 16 4 C 0.46 7.44 7.95 36.01 0.29 7.73 16 5 O -0.49 -9.66 15.78 -18.75 -0.30 -9.96 16 6 C -0.05 -0.76 5.71 -29.03 -0.17 -0.93 16 7 C 0.10 1.71 5.34 -82.02 -0.44 1.28 16 8 N -0.48 -8.14 10.37 -10.65 -0.11 -8.25 16 9 C 0.21 3.47 12.28 -92.14 -1.13 2.34 16 10 N -0.48 -8.62 10.43 -14.42 -0.15 -8.77 16 11 C 0.09 1.61 9.83 -16.98 -0.17 1.44 16 12 C 0.18 3.31 5.06 -83.45 -0.42 2.89 16 13 N -0.64 -11.56 3.21 -7.99 -0.03 -11.59 16 14 C 0.37 7.17 5.04 -83.56 -0.42 6.75 16 15 C -0.38 -7.01 7.02 -38.32 -0.27 -7.28 16 16 H 0.12 2.19 6.98 -52.48 -0.37 1.82 16 17 C 0.07 1.24 4.76 -17.20 -0.08 1.16 16 18 N -0.72 -12.18 10.88 55.60 0.61 -11.58 16 19 Si 0.92 13.91 29.58 -169.99 -5.03 8.88 16 20 H -0.25 -3.83 7.11 56.52 0.40 -3.42 16 21 H -0.26 -4.00 7.11 56.52 0.40 -3.60 16 22 H -0.26 -3.94 7.11 56.52 0.40 -3.54 16 23 C -0.30 -6.35 5.88 -104.94 -0.62 -6.97 16 24 C 0.32 7.08 13.89 -22.47 -0.31 6.77 16 25 N -0.53 -12.04 18.54 41.84 0.78 -11.27 16 26 C 0.30 6.74 14.81 -22.46 -0.33 6.41 16 27 N -0.53 -12.20 18.54 41.86 0.78 -11.43 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.07 1.01 8.13 -51.93 -0.42 0.58 16 33 H 0.12 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.12 1.57 6.74 -51.93 -0.35 1.22 16 35 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 36 H 0.17 3.16 6.36 -52.49 -0.33 2.83 16 37 H 0.40 6.99 7.04 -40.82 -0.29 6.70 16 38 H 0.30 4.69 8.29 -40.82 -0.34 4.35 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -26.33 355.24 -5.39 -31.72 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -3.43 Total: 10.81 kcal Atomic # 6 Polarization: 25.05 SS G_CDS: -3.46 Total: 21.59 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: 1.87 Total: -62.88 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.70 Total: -15.47 kcal Atomic # 14 Polarization: 13.91 SS G_CDS: -5.03 Total: 8.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.33 -5.39 -31.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.073 kcal (2) G-P(sol) polarization free energy of solvation -26.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds