Wall clock time and date at job start Tue Mar 31 2020 15:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45207 * 109.47467 * 2 1 4 4 C 1.34226 * 116.99868 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00550 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99600 * 180.27345 * 4 3 2 7 7 C 1.50702 * 109.47070 * 179.72370 * 6 4 3 8 8 N 1.32272 * 120.49438 * 90.00072 * 7 6 4 9 9 C 1.31784 * 120.90104 * 179.97438 * 8 7 6 10 10 N 1.31816 * 121.93137 * 0.02562 * 9 8 7 11 11 C 1.32242 * 120.89759 * 359.97438 * 10 9 8 12 12 C 1.39257 * 120.49396 * 269.71888 * 7 6 4 13 13 N 1.39791 * 120.87394 * 0.02562 * 12 7 6 14 14 C 1.38292 * 119.99597 * 186.01985 * 13 12 7 15 15 C 1.38995 * 120.00178 * 60.47261 * 14 13 12 16 16 H 1.08008 * 120.00236 * 199.55186 * 15 14 13 17 17 C 1.40833 * 120.00398 * 19.55499 * 15 14 13 18 18 N 1.30340 * 119.99506 * 9.43249 * 17 15 14 19 19 Si 1.86792 * 120.00174 * 189.43759 * 17 15 14 20 20 H 1.48502 * 109.47478 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47273 * 119.99803 * 19 17 15 22 22 H 1.48500 * 109.47131 * 239.99599 * 19 17 15 23 23 C 1.41172 * 119.99584 * 240.47111 * 14 13 12 24 24 C 1.43200 * 119.99505 * 174.75246 * 23 14 13 25 25 N 9.21060 * 130.73079 * 73.38269 * 2 1 3 26 26 C 1.43194 * 119.99848 * 354.75720 * 23 14 13 27 27 N 5.12636 * 123.89559 * 89.83545 * 2 1 3 28 28 H 1.09002 * 109.47049 * 300.00486 * 1 2 3 29 29 H 1.09000 * 109.46792 * 60.00053 * 1 2 3 30 30 H 1.08992 * 109.47175 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47458 * 239.99864 * 2 1 3 32 32 H 1.08998 * 109.47226 * 119.99643 * 2 1 3 33 33 H 1.09007 * 109.47054 * 299.72338 * 6 4 3 34 34 H 1.08995 * 109.47090 * 59.71946 * 6 4 3 35 35 H 1.07998 * 119.03385 * 179.97438 * 9 8 7 36 36 H 1.08001 * 120.49402 * 180.02562 * 11 10 9 37 37 H 0.96993 * 120.00466 * 6.01975 * 13 12 7 38 38 H 0.96995 * 119.99945 * 184.98926 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0057 7 6 5.4258 2.8584 0.0106 8 7 6.0999 2.8267 -1.1270 9 6 7.4160 2.7582 -1.1321 10 7 8.1163 2.7179 -0.0161 11 6 7.5176 2.7456 1.1627 12 6 6.1277 2.8236 1.2128 13 7 5.4548 2.8605 2.4376 14 6 6.1708 2.9507 3.6173 15 6 6.9957 4.0455 3.8477 16 1 7.7800 3.9844 4.5877 17 6 6.8087 5.2344 3.1163 18 7 5.7565 5.3756 2.3602 19 14 8.0687 6.6087 3.2297 20 1 9.1623 6.2031 4.1489 21 1 8.6295 6.8787 1.8814 22 1 7.4159 7.8371 3.7494 23 6 6.0638 1.9309 4.5876 24 6 6.8885 1.9667 5.7577 25 7 7.5399 1.9960 6.6881 26 6 5.1308 0.8607 4.4015 27 7 4.3888 0.0122 4.2551 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5879 3.4722 -0.8839 34 1 3.5818 3.4668 0.8960 35 1 7.9359 2.7336 -2.0784 36 1 8.0978 2.7126 2.0730 37 1 4.4859 2.8227 2.4600 38 1 5.6632 6.1627 1.8010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:53 Heat of formation + Delta-G solvation = 4.648078 kcal Electronic energy + Delta-G solvation = -27412.065121 eV Core-core repulsion = 23447.351608 eV Total energy + Delta-G solvation = -3964.713513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.25288 -41.29295 -39.23918 -37.81364 -37.13507 -36.56457 -35.60306 -34.99882 -33.24796 -32.74291 -31.15288 -29.63452 -28.86606 -25.31924 -24.90388 -23.66623 -22.95193 -22.01757 -20.78769 -19.43986 -18.92765 -18.86114 -17.94474 -17.81716 -17.63458 -17.40146 -17.04399 -16.50510 -15.58964 -15.37541 -15.21760 -14.69852 -14.47460 -14.44585 -14.37293 -14.10658 -13.92692 -13.58552 -13.49350 -13.43195 -13.41582 -13.32966 -13.11229 -12.86091 -12.82596 -12.75481 -12.53893 -12.25608 -12.16795 -11.85963 -11.79031 -11.57253 -11.56918 -11.36896 -10.14891 -9.94501 -9.32531 -8.43330 -7.18767 0.07316 0.15421 0.71959 1.11490 1.37459 1.51373 1.53839 1.64726 2.00743 2.07039 2.19873 2.23070 2.54703 2.65487 3.00323 3.12725 3.36638 3.46938 3.53545 3.72158 3.79806 3.96157 3.96856 4.06281 4.21616 4.31570 4.37420 4.55195 4.62007 4.65488 4.81229 4.90550 4.91945 5.11696 5.29466 5.40323 5.42751 5.64306 5.94201 6.05990 6.14426 6.56615 6.65741 6.72589 7.15314 7.28850 7.31657 7.65198 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.005354 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.742366 B = 5228.846598 C = 6617.314018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 O -0.355 6.355 4 C 0.466 3.534 5 O -0.533 6.533 6 C -0.051 4.051 7 C 0.103 3.897 8 N -0.482 5.482 9 C 0.210 3.790 10 N -0.492 5.492 11 C 0.073 3.927 12 C 0.170 3.830 13 N -0.640 5.640 14 C 0.368 3.632 15 C -0.364 4.364 16 H 0.109 0.891 17 C 0.051 3.949 18 N -0.714 5.714 19 Si 0.972 3.028 20 H -0.255 1.255 21 H -0.260 1.260 22 H -0.255 1.255 23 C -0.323 4.323 24 C 0.330 3.670 25 N -0.553 5.553 26 C 0.312 3.688 27 N -0.555 5.555 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.153 0.847 34 H 0.137 0.863 35 H 0.218 0.782 36 H 0.168 0.832 37 H 0.403 0.597 38 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 5.940 -11.205 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.309 3.691 5 O -0.423 6.423 6 C -0.089 4.089 7 C -0.049 4.049 8 N -0.195 5.195 9 C -0.079 4.079 10 N -0.205 5.205 11 C -0.100 4.100 12 C 0.061 3.939 13 N -0.261 5.261 14 C 0.264 3.736 15 C -0.391 4.391 16 H 0.127 0.873 17 C -0.181 4.181 18 N -0.332 5.332 19 Si 0.792 3.208 20 H -0.178 1.178 21 H -0.184 1.184 22 H -0.179 1.179 23 C -0.342 4.342 24 C 0.023 3.977 25 N -0.236 5.236 26 C 0.006 3.994 27 N -0.239 5.239 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.171 0.829 34 H 0.155 0.845 35 H 0.234 0.766 36 H 0.185 0.815 37 H 0.241 0.759 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.964 4.506 -10.889 13.208 hybrid contribution -0.187 0.382 0.735 0.849 sum -6.151 4.888 -10.154 12.838 Atomic orbital electron populations 1.21807 0.89758 1.04378 1.04006 1.23253 0.97487 0.79308 1.01915 1.86474 1.23405 1.33471 1.83780 1.23846 0.80894 0.92674 0.71714 1.90709 1.61212 1.44311 1.46018 1.20088 0.88395 0.91062 1.09347 1.20383 0.95421 1.02027 0.87114 1.67900 1.10969 1.11560 1.29029 1.24972 0.86459 0.99011 0.97444 1.68197 1.41858 1.11622 0.98859 1.23050 0.90621 0.99342 0.96951 1.19111 0.93921 0.94049 0.86845 1.41202 1.07914 1.75958 1.01001 1.16743 0.86251 0.88682 0.81943 1.20531 1.11556 0.93135 1.13855 0.87295 1.26899 0.97204 1.01512 0.92503 1.69418 1.22398 1.29069 1.12285 0.85170 0.78478 0.76927 0.80236 1.17816 1.18427 1.17907 1.12978 1.16254 1.04321 1.00612 1.24796 0.90888 0.91108 0.90908 1.81074 1.16374 1.12293 1.13849 1.25385 0.91287 0.91214 0.91528 1.81091 1.17260 1.13902 1.11620 0.91417 0.90317 0.88386 0.91225 0.92972 0.82896 0.84537 0.76576 0.81519 0.75909 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.29 71.98 0.74 -1.58 16 2 C 0.05 1.32 6.19 71.98 0.45 1.76 16 3 O -0.35 -9.68 10.22 -51.38 -0.53 -10.20 16 4 C 0.47 14.56 7.95 71.24 0.57 15.13 16 5 O -0.53 -21.03 15.78 21.98 0.35 -20.69 16 6 C -0.05 -1.35 5.71 29.10 0.17 -1.18 16 7 C 0.10 3.34 5.34 42.74 0.23 3.56 16 8 N -0.48 -15.51 10.37 -187.61 -1.95 -17.46 16 9 C 0.21 6.49 12.28 180.88 2.22 8.72 16 10 N -0.49 -17.03 10.43 -199.54 -2.08 -19.11 16 11 C 0.07 2.63 9.83 84.89 0.83 3.47 16 12 C 0.17 5.99 5.06 38.37 0.19 6.18 16 13 N -0.64 -22.70 3.21 -179.21 -0.58 -23.27 16 14 C 0.37 14.10 5.04 39.03 0.20 14.29 16 15 C -0.36 -13.29 7.02 23.09 0.16 -13.12 16 16 H 0.11 4.12 6.98 -2.91 -0.02 4.10 16 17 C 0.05 1.65 4.76 85.55 0.41 2.06 16 18 N -0.71 -22.45 10.88 21.98 0.24 -22.21 16 19 Si 0.97 26.73 29.58 68.60 2.03 28.76 16 20 H -0.26 -7.42 7.11 99.48 0.71 -6.71 16 21 H -0.26 -7.19 7.11 99.48 0.71 -6.48 16 22 H -0.26 -6.77 7.11 99.48 0.71 -6.06 16 23 C -0.32 -13.64 5.88 -20.07 -0.12 -13.76 16 24 C 0.33 14.63 13.89 88.33 1.23 15.86 16 25 N -0.55 -25.58 18.54 19.01 0.35 -25.22 16 26 C 0.31 14.05 14.81 88.32 1.31 15.36 16 27 N -0.56 -26.33 18.54 19.01 0.35 -25.98 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 32 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 33 H 0.15 3.14 8.14 -2.38 -0.02 3.12 16 34 H 0.14 3.22 6.74 -2.39 -0.02 3.20 16 35 H 0.22 5.00 8.06 -2.91 -0.02 4.97 16 36 H 0.17 6.13 6.36 -2.91 -0.02 6.11 16 37 H 0.40 13.80 7.04 -92.71 -0.65 13.15 16 38 H 0.32 8.80 8.29 -92.71 -0.77 8.03 16 Total: -1.00 -56.04 355.24 7.28 -48.76 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.50 Total: 29.89 kcal Atomic # 6 Polarization: 48.16 SS G_CDS: 8.58 Total: 56.74 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -3.66 Total: -133.25 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.18 Total: -30.89 kcal Atomic # 14 Polarization: 26.73 SS G_CDS: 2.03 Total: 28.76 kcal Total: -56.04 7.28 -48.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.410 kcal (2) G-P(sol) polarization free energy of solvation -56.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds