Wall clock time and date at job start Tue Mar 31 2020 15:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35672 * 116.99854 * 2 1 4 4 C 1.38025 * 120.21171 * 359.97296 * 3 2 1 5 5 C 1.39236 * 119.98027 * 180.02562 * 4 3 2 6 6 N 1.39006 * 119.79655 * 180.02562 * 5 4 3 7 7 C 1.38429 * 120.00140 * 146.67642 * 6 5 4 8 8 N 1.32906 * 120.72860 * 353.84829 * 7 6 5 9 9 C 1.32485 * 121.14134 * 179.75483 * 8 7 6 10 10 O 1.35502 * 118.84072 * 180.27379 * 9 8 7 11 11 N 1.32178 * 122.31989 * 0.51479 * 9 8 7 12 12 C 1.32888 * 120.59643 * 359.75905 * 11 9 8 13 13 N 1.37201 * 134.85257 * 179.97438 * 12 11 9 14 14 H 0.97003 * 126.27708 * 0.05281 * 13 12 11 15 15 C 1.36403 * 107.43799 * 180.02562 * 13 12 11 16 16 N 1.30111 * 109.97022 * 0.02562 * 15 13 12 17 17 C 1.35520 * 109.44829 * 359.97438 * 16 15 13 18 18 C 1.39709 * 120.40456 * 359.97438 * 5 4 3 19 19 C 1.36223 * 120.43066 * 359.74192 * 18 5 4 20 20 C 1.40859 * 120.00495 * 0.51683 * 19 18 5 21 21 C 1.40960 * 120.19635 * 179.76313 * 20 19 18 22 22 H 1.07996 * 119.99823 * 206.73600 * 21 20 19 23 23 C 1.39837 * 120.00011 * 26.73482 * 21 20 19 24 24 N 1.30951 * 120.00032 * 199.49308 * 23 21 20 25 25 Si 1.86803 * 120.00168 * 19.49555 * 23 21 20 26 26 H 1.48501 * 109.47201 * 269.99874 * 25 23 21 27 27 H 1.48498 * 109.47006 * 29.99723 * 25 23 21 28 28 H 1.48496 * 109.47239 * 149.99593 * 25 23 21 29 29 H 1.08996 * 109.47318 * 300.00022 * 1 2 3 30 30 H 1.09001 * 109.46980 * 60.00579 * 1 2 3 31 31 H 1.09005 * 109.46617 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.01454 * 0.04253 * 4 3 2 33 33 H 0.97007 * 119.99762 * 326.67615 * 6 5 4 34 34 H 0.96696 * 113.99934 * 270.23229 * 10 9 8 35 35 H 1.08004 * 125.01005 * 180.02562 * 15 13 12 36 36 H 1.08003 * 119.78419 * 179.97438 * 18 5 4 37 37 H 1.07998 * 119.99466 * 180.27822 * 19 18 5 38 38 H 0.96994 * 119.99740 * 354.92830 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2974 2.3692 -0.0006 5 6 1.9345 3.6072 -0.0011 6 7 1.1780 4.7734 -0.0011 7 6 1.6419 5.8994 0.6570 8 7 2.7467 5.8484 1.3940 9 6 3.2006 6.9222 2.0235 10 8 4.3347 6.8188 2.7578 11 7 2.5836 8.0896 1.9642 12 6 1.4690 8.2303 1.2545 13 7 0.6121 9.2699 0.9945 14 1 0.6934 10.1775 1.3269 15 6 -0.3746 8.7929 0.1825 16 7 -0.1737 7.5319 -0.0675 17 6 0.9515 7.1202 0.5656 18 6 3.3295 3.6846 -0.0005 19 6 4.0834 2.5501 0.0058 20 6 3.4574 1.2883 0.0009 21 6 4.2336 0.1117 0.0024 22 1 3.8357 -0.7983 -0.4216 23 6 5.5190 0.1228 0.5530 24 7 6.3769 -0.8130 0.2320 25 14 6.0123 1.4724 1.7466 26 1 6.5947 2.6115 0.9926 27 1 4.8150 1.9341 2.4940 28 1 7.0191 0.9447 2.7021 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2187 2.3169 -0.0003 33 1 0.3250 4.7981 -0.4624 34 1 4.1846 6.5715 3.6805 35 1 -1.2008 9.3760 -0.1970 36 1 3.8132 4.6502 -0.0014 37 1 5.1612 2.6181 0.0108 38 1 6.0991 -1.5539 -0.3290 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170231428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:30 Heat of formation + Delta-G solvation = 65.534855 kcal Electronic energy + Delta-G solvation = -27039.697214 eV Core-core repulsion = 23077.623950 eV Total energy + Delta-G solvation = -3962.073264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.49947 -39.73399 -39.01654 -37.62182 -36.34914 -35.30735 -33.70764 -32.74272 -31.96092 -30.02805 -29.13016 -28.56281 -26.69891 -24.89095 -23.81655 -23.03931 -21.81575 -21.44926 -20.52529 -19.52889 -18.91394 -18.22474 -17.69312 -17.11131 -16.59963 -16.02288 -15.73625 -14.97614 -14.86987 -14.79051 -14.68320 -14.47153 -14.19329 -14.00706 -13.43455 -13.03847 -12.71094 -12.37636 -11.95390 -11.84142 -11.72442 -11.55494 -11.46429 -10.92643 -10.71835 -10.54271 -10.48096 -10.35052 -9.91258 -9.76037 -9.42306 -9.26843 -8.99865 -8.79080 -8.18195 -7.47204 -7.40703 -6.90586 -4.36355 0.77434 1.37141 2.27351 2.50567 2.62893 2.69843 3.17347 3.28718 3.41666 3.55338 3.63282 3.92444 4.01783 4.05912 4.30369 4.52017 4.58365 4.69563 4.88804 5.33521 5.45162 5.60685 5.67938 5.68670 5.74620 5.92287 6.14199 6.26191 6.43680 6.58039 6.70297 6.80738 6.85814 7.06819 7.34956 7.45796 7.49323 7.52341 7.62063 7.74055 7.92347 7.95299 8.15094 8.42090 8.43798 8.56921 8.84410 9.99501 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.004173 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.979247 B = 6708.215885 C = 8329.985264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.033 3.967 4 C -0.175 4.175 5 C 0.010 3.990 6 N -0.595 5.595 7 C 0.514 3.486 8 N -0.573 5.573 9 C 0.562 3.438 10 O -0.454 6.454 11 N -0.586 5.586 12 C 0.324 3.676 13 N -0.582 5.582 14 H 0.428 0.572 15 C 0.236 3.764 16 N -0.456 5.456 17 C -0.123 4.123 18 C -0.062 4.062 19 C -0.225 4.225 20 C 0.084 3.916 21 C -0.485 4.485 22 H 0.082 0.918 23 C 0.040 3.960 24 N -0.809 5.809 25 Si 1.073 2.927 26 H -0.273 1.273 27 H -0.260 1.260 28 H -0.291 1.291 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.417 0.583 34 H 0.411 0.589 35 H 0.223 0.777 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.182 15.586 2.515 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C -0.012 4.012 4 C -0.197 4.197 5 C -0.083 4.083 6 N -0.213 5.213 7 C 0.261 3.739 8 N -0.312 5.312 9 C 0.254 3.746 10 O -0.256 6.256 11 N -0.326 5.326 12 C 0.081 3.919 13 N -0.198 5.198 14 H 0.268 0.732 15 C -0.052 4.052 16 N -0.175 5.175 17 C -0.251 4.251 18 C -0.083 4.083 19 C -0.245 4.245 20 C 0.080 3.920 21 C -0.513 4.513 22 H 0.101 0.899 23 C -0.180 4.180 24 N -0.431 5.431 25 Si 0.899 3.101 26 H -0.200 1.200 27 H -0.184 1.184 28 H -0.219 1.219 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.255 0.745 34 H 0.270 0.730 35 H 0.240 0.760 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.044 15.178 2.891 18.428 hybrid contribution -2.328 0.488 -0.547 2.440 sum -12.371 15.666 2.344 20.099 Atomic orbital electron populations 1.22780 0.81399 1.02096 1.00020 1.86017 1.18467 1.27659 1.90057 1.18784 0.91900 0.82414 1.08116 1.20340 0.97590 0.91312 1.10410 1.16714 0.90252 0.83086 1.18275 1.41685 1.22287 1.07957 1.49420 1.17406 0.86780 0.84200 0.85466 1.67878 1.15356 1.30885 1.17116 1.19388 0.84273 0.82014 0.88918 1.84711 1.23466 1.90640 1.26781 1.66581 1.10080 1.28199 1.27734 1.18196 0.90596 0.87939 0.95119 1.42721 1.21952 1.11705 1.43468 0.73235 1.25263 0.94095 0.91492 0.94311 1.70137 1.14988 1.10166 1.22209 1.19552 1.00188 0.95476 1.09865 1.20245 0.91327 0.98090 0.98591 1.20504 0.98744 0.91313 1.13918 1.17242 0.88311 0.93734 0.92682 1.20534 0.99977 0.97471 1.33284 0.89948 1.27376 0.91770 1.01696 0.97146 1.70586 1.35184 1.09700 1.27657 0.83596 0.77220 0.73516 0.75746 1.20034 1.18398 1.21858 0.93981 0.94058 0.89768 0.87820 0.74545 0.72991 0.76048 0.86986 0.86668 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 16 2 O -0.31 -6.85 9.80 -18.72 -0.18 -7.03 16 3 C 0.03 0.77 6.71 -38.43 -0.26 0.51 16 4 C -0.18 -3.63 8.94 -39.29 -0.35 -3.98 16 5 C 0.01 0.21 6.30 -83.69 -0.53 -0.31 16 6 N -0.59 -10.48 5.43 -9.59 -0.05 -10.53 16 7 C 0.51 9.13 7.24 -154.61 -1.12 8.01 16 8 N -0.57 -10.72 7.28 -13.74 -0.10 -10.82 16 9 C 0.56 9.46 8.68 -91.23 -0.79 8.67 16 10 O -0.45 -6.61 13.64 -18.20 -0.25 -6.86 16 11 N -0.59 -9.26 10.49 -14.05 -0.15 -9.41 16 12 C 0.32 4.64 8.51 -155.80 -1.33 3.32 16 13 N -0.58 -5.36 6.20 -13.23 -0.08 -5.44 16 14 H 0.43 2.38 8.96 -40.82 -0.37 2.01 16 15 C 0.24 2.02 12.98 -89.44 -1.16 0.85 16 16 N -0.46 -5.96 11.28 -11.81 -0.13 -6.09 16 17 C -0.12 -1.93 7.16 -84.51 -0.61 -2.53 16 18 C -0.06 -1.40 8.50 -39.76 -0.34 -1.74 16 19 C -0.22 -5.49 7.25 -39.32 -0.28 -5.78 16 20 C 0.08 2.16 5.19 -106.65 -0.55 1.61 16 21 C -0.48 -13.16 9.06 -37.95 -0.34 -13.50 16 22 H 0.08 2.35 7.84 -52.49 -0.41 1.93 16 23 C 0.04 1.06 5.40 -17.33 -0.09 0.96 16 24 N -0.81 -21.77 13.66 55.54 0.76 -21.01 16 25 Si 1.07 24.80 24.91 -169.99 -4.23 20.57 16 26 H -0.27 -6.07 6.39 56.52 0.36 -5.71 16 27 H -0.26 -6.02 7.06 56.52 0.40 -5.62 16 28 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 30 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.10 1.84 6.29 -52.48 -0.33 1.50 16 33 H 0.42 6.37 8.83 -40.82 -0.36 6.01 16 34 H 0.41 3.76 9.06 45.56 0.41 4.18 16 35 H 0.22 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.11 2.50 6.27 -52.48 -0.33 2.17 16 37 H 0.12 2.81 4.23 -52.49 -0.22 2.59 16 38 H 0.29 7.51 8.73 -40.82 -0.36 7.15 16 LS Contribution 326.73 15.07 4.92 4.92 Total: -1.00 -33.92 326.73 -8.70 -42.63 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -2.44 Total: 11.48 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -6.76 Total: -2.39 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.24 Total: -63.31 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.43 Total: -13.89 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -4.23 Total: 20.57 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.92 -8.70 -42.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170231428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.161 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds