Wall clock time and date at job start Tue Mar 31 2020 15:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35672 * 116.99854 * 2 1 4 4 C 1.38025 * 120.21171 * 359.97296 * 3 2 1 5 5 C 1.39236 * 119.98027 * 180.02562 * 4 3 2 6 6 N 1.39006 * 119.79655 * 180.02562 * 5 4 3 7 7 C 1.38429 * 120.00140 * 146.67642 * 6 5 4 8 8 N 1.32906 * 120.72860 * 353.84829 * 7 6 5 9 9 C 1.32485 * 121.14134 * 179.75483 * 8 7 6 10 10 O 1.35502 * 118.84072 * 180.27379 * 9 8 7 11 11 N 1.32178 * 122.31989 * 0.51479 * 9 8 7 12 12 C 1.32888 * 120.59643 * 359.75905 * 11 9 8 13 13 N 1.37201 * 134.85257 * 179.97438 * 12 11 9 14 14 H 0.97003 * 126.27708 * 0.05281 * 13 12 11 15 15 C 1.36403 * 107.43799 * 180.02562 * 13 12 11 16 16 N 1.30111 * 109.97022 * 0.02562 * 15 13 12 17 17 C 1.35520 * 109.44829 * 359.97438 * 16 15 13 18 18 C 1.39709 * 120.40456 * 359.97438 * 5 4 3 19 19 C 1.36223 * 120.43066 * 359.74192 * 18 5 4 20 20 C 1.40859 * 120.00495 * 0.51683 * 19 18 5 21 21 C 1.40960 * 120.19635 * 179.76313 * 20 19 18 22 22 H 1.07996 * 119.99823 * 206.73600 * 21 20 19 23 23 C 1.39837 * 120.00011 * 26.73482 * 21 20 19 24 24 N 1.30951 * 120.00032 * 199.49308 * 23 21 20 25 25 Si 1.86803 * 120.00168 * 19.49555 * 23 21 20 26 26 H 1.48501 * 109.47201 * 269.99874 * 25 23 21 27 27 H 1.48498 * 109.47006 * 29.99723 * 25 23 21 28 28 H 1.48496 * 109.47239 * 149.99593 * 25 23 21 29 29 H 1.08996 * 109.47318 * 300.00022 * 1 2 3 30 30 H 1.09001 * 109.46980 * 60.00579 * 1 2 3 31 31 H 1.09005 * 109.46617 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.01454 * 0.04253 * 4 3 2 33 33 H 0.97007 * 119.99762 * 326.67615 * 6 5 4 34 34 H 0.96696 * 113.99934 * 270.23229 * 10 9 8 35 35 H 1.08004 * 125.01005 * 180.02562 * 15 13 12 36 36 H 1.08003 * 119.78419 * 179.97438 * 18 5 4 37 37 H 1.07998 * 119.99466 * 180.27822 * 19 18 5 38 38 H 0.96994 * 119.99740 * 354.92830 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2974 2.3692 -0.0006 5 6 1.9345 3.6072 -0.0011 6 7 1.1780 4.7734 -0.0011 7 6 1.6419 5.8994 0.6570 8 7 2.7467 5.8484 1.3940 9 6 3.2006 6.9222 2.0235 10 8 4.3347 6.8188 2.7578 11 7 2.5836 8.0896 1.9642 12 6 1.4690 8.2303 1.2545 13 7 0.6121 9.2699 0.9945 14 1 0.6934 10.1775 1.3269 15 6 -0.3746 8.7929 0.1825 16 7 -0.1737 7.5319 -0.0675 17 6 0.9515 7.1202 0.5656 18 6 3.3295 3.6846 -0.0005 19 6 4.0834 2.5501 0.0058 20 6 3.4574 1.2883 0.0009 21 6 4.2336 0.1117 0.0024 22 1 3.8357 -0.7983 -0.4216 23 6 5.5190 0.1228 0.5530 24 7 6.3769 -0.8130 0.2320 25 14 6.0123 1.4724 1.7466 26 1 6.5947 2.6115 0.9926 27 1 4.8150 1.9341 2.4940 28 1 7.0191 0.9447 2.7021 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2187 2.3169 -0.0003 33 1 0.3250 4.7981 -0.4624 34 1 4.1846 6.5715 3.6805 35 1 -1.2008 9.3760 -0.1970 36 1 3.8132 4.6502 -0.0014 37 1 5.1612 2.6181 0.0108 38 1 6.0991 -1.5539 -0.3290 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170231428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:29 Heat of formation + Delta-G solvation = 37.591315 kcal Electronic energy + Delta-G solvation = -27040.908937 eV Core-core repulsion = 23077.623950 eV Total energy + Delta-G solvation = -3963.284987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.53750 -41.06939 -40.52305 -39.03867 -37.76661 -36.79351 -35.33659 -34.06606 -33.12162 -31.59859 -30.87142 -29.82610 -28.13133 -26.42974 -25.03201 -24.42122 -23.30091 -22.73934 -22.05907 -20.74596 -20.17319 -20.01734 -19.10504 -18.20523 -17.94086 -17.31980 -17.00718 -16.49575 -16.37926 -16.30012 -15.96736 -15.94494 -15.53945 -15.29269 -14.96240 -14.71782 -14.41086 -13.81975 -13.35504 -13.20266 -13.07919 -12.99663 -12.82322 -12.53949 -12.43386 -12.13674 -11.97517 -11.73300 -11.44344 -11.27535 -11.11511 -10.83337 -10.51377 -10.06769 -9.70039 -9.33218 -9.08571 -8.58238 -6.32768 -0.37278 0.12825 0.76938 0.88297 1.32635 1.41354 1.56374 1.74492 1.79559 1.94716 2.20008 2.39297 2.59241 2.76575 2.79588 3.02317 3.45481 3.52502 3.59839 4.08771 4.13655 4.34774 4.38554 4.45970 4.50182 4.70167 4.72101 4.72431 4.91627 5.00272 5.12352 5.24420 5.46073 5.52615 5.62321 5.76705 5.90474 6.11382 6.23279 6.35334 6.50095 6.51893 6.61523 6.72209 6.76055 7.05870 7.18348 8.03201 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.004173 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.979247 B = 6708.215885 C = 8329.985264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.338 6.338 3 C 0.031 3.969 4 C -0.176 4.176 5 C 0.057 3.943 6 N -0.603 5.603 7 C 0.498 3.502 8 N -0.600 5.600 9 C 0.546 3.454 10 O -0.461 6.461 11 N -0.578 5.578 12 C 0.304 3.696 13 N -0.563 5.563 14 H 0.448 0.552 15 C 0.283 3.717 16 N -0.495 5.495 17 C -0.124 4.124 18 C -0.083 4.083 19 C -0.221 4.221 20 C 0.051 3.949 21 C -0.524 4.524 22 H 0.048 0.952 23 C 0.011 3.989 24 N -0.844 5.844 25 Si 1.104 2.896 26 H -0.262 1.262 27 H -0.264 1.264 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.141 0.859 33 H 0.429 0.571 34 H 0.430 0.570 35 H 0.286 0.714 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.848 20.295 2.867 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.253 6.253 3 C -0.014 4.014 4 C -0.197 4.197 5 C -0.038 4.038 6 N -0.226 5.226 7 C 0.247 3.753 8 N -0.340 5.340 9 C 0.238 3.762 10 O -0.266 6.266 11 N -0.317 5.317 12 C 0.060 3.940 13 N -0.180 5.180 14 H 0.292 0.708 15 C -0.004 4.004 16 N -0.215 5.215 17 C -0.250 4.250 18 C -0.104 4.104 19 C -0.240 4.240 20 C 0.048 3.952 21 C -0.554 4.554 22 H 0.066 0.934 23 C -0.202 4.202 24 N -0.469 5.469 25 Si 0.926 3.074 26 H -0.188 1.188 27 H -0.189 1.189 28 H -0.206 1.206 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.159 0.841 33 H 0.269 0.731 34 H 0.293 0.707 35 H 0.301 0.699 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.730 19.971 3.281 24.457 hybrid contribution -1.685 -0.424 -0.663 1.860 sum -15.415 19.548 2.618 25.032 Atomic orbital electron populations 1.23165 0.78099 1.04471 1.01457 1.85988 1.21967 1.27437 1.89914 1.18957 0.91606 0.83862 1.06999 1.20619 0.99385 0.90131 1.09599 1.16849 0.89940 0.84500 1.12513 1.41477 1.22746 1.07055 1.51362 1.17583 0.87001 0.84773 0.85900 1.67776 1.16164 1.32346 1.17689 1.19484 0.84952 0.82103 0.89701 1.84676 1.23023 1.90673 1.28268 1.66649 1.10309 1.27503 1.27206 1.18523 0.90833 0.89416 0.95266 1.42841 1.20657 1.11789 1.42760 0.70774 1.26642 0.93284 0.90290 0.90207 1.70211 1.14734 1.12500 1.24031 1.19578 1.00932 0.94773 1.09765 1.20312 0.92356 0.97501 1.00210 1.20563 0.98784 0.91594 1.13107 1.17412 0.89803 0.93537 0.94436 1.20313 1.01299 0.97100 1.36687 0.93365 1.28194 0.91736 1.02748 0.97550 1.70645 1.35455 1.10785 1.30005 0.83201 0.77030 0.72356 0.74765 1.18827 1.18878 1.20642 0.92546 0.92258 0.87236 0.84103 0.73075 0.70739 0.69930 0.86678 0.87345 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.81 113.37 1.11 1.80 16 2 O -0.34 -15.22 9.80 -89.89 -0.88 -16.11 16 3 C 0.03 1.48 6.71 23.02 0.15 1.64 16 4 C -0.18 -7.01 8.94 22.46 0.20 -6.81 16 5 C 0.06 2.27 6.30 38.60 0.24 2.51 16 6 N -0.60 -19.93 5.43 -184.27 -1.00 -20.93 16 7 C 0.50 16.71 7.24 133.45 0.97 17.67 16 8 N -0.60 -21.76 7.28 -310.23 -2.26 -24.01 16 9 C 0.55 17.60 8.68 180.56 1.57 19.17 16 10 O -0.46 -12.96 13.64 -88.04 -1.20 -14.16 16 11 N -0.58 -16.85 10.49 -311.35 -3.27 -20.12 16 12 C 0.30 7.62 8.51 133.86 1.14 8.76 16 13 N -0.56 -7.32 6.20 -195.78 -1.21 -8.54 16 14 H 0.45 2.39 8.96 -92.71 -0.83 1.56 16 15 C 0.28 3.02 12.98 179.94 2.34 5.36 16 16 N -0.49 -10.64 11.28 -191.29 -2.16 -12.80 16 17 C -0.12 -3.48 7.16 39.69 0.28 -3.20 16 18 C -0.08 -3.75 8.50 22.16 0.19 -3.56 16 19 C -0.22 -11.06 7.25 22.44 0.16 -10.90 16 20 C 0.05 2.75 5.19 -21.18 -0.11 2.64 16 21 C -0.52 -30.61 9.06 23.32 0.21 -30.40 16 22 H 0.05 3.02 7.84 -2.91 -0.02 3.00 16 23 C 0.01 0.61 5.40 85.21 0.46 1.07 16 24 N -0.84 -48.73 13.66 21.81 0.30 -48.43 16 25 Si 1.10 52.36 24.91 68.60 1.71 54.07 16 26 H -0.26 -11.76 6.39 99.48 0.64 -11.12 16 27 H -0.26 -12.50 7.06 99.48 0.70 -11.80 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 29 H 0.06 1.53 7.66 -2.39 -0.02 1.51 16 30 H 0.06 1.57 7.66 -2.39 -0.02 1.55 16 31 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 32 H 0.14 4.50 6.29 -2.91 -0.02 4.48 16 33 H 0.43 11.89 8.83 -92.70 -0.82 11.07 16 34 H 0.43 7.42 9.06 -74.06 -0.67 6.75 16 35 H 0.29 -0.79 8.06 -2.91 -0.02 -0.81 16 36 H 0.12 5.12 6.27 -2.91 -0.02 5.10 16 37 H 0.11 5.49 4.23 -2.91 -0.01 5.48 16 38 H 0.28 15.86 8.73 -92.71 -0.81 15.05 16 Total: -1.00 -80.30 326.73 -2.29 -82.60 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -1.24 Total: 22.66 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 8.92 Total: 5.77 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -9.60 Total: -134.83 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -2.08 Total: -30.26 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 1.71 Total: 54.07 kcal Total: -80.30 -2.29 -82.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170231428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.187 kcal (2) G-P(sol) polarization free energy of solvation -80.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds