Wall clock time and date at job start Tue Mar 31 2020 15:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35951 * 116.99761 * 2 1 4 4 C 1.39432 * 119.81881 * 0.02562 * 3 2 1 5 5 C 1.38064 * 120.57019 * 179.77075 * 4 3 2 6 6 C 1.38744 * 120.20156 * 0.46500 * 5 4 3 7 7 N 1.38900 * 120.18193 * 179.79417 * 6 5 4 8 8 C 1.38396 * 119.99687 * 339.81017 * 7 6 5 9 9 N 1.32903 * 120.73512 * 354.05420 * 8 7 6 10 10 C 1.32483 * 121.14299 * 180.02562 * 9 8 7 11 11 O 1.35513 * 118.84063 * 180.27419 * 10 9 8 12 12 N 1.32173 * 122.32565 * 359.97438 * 10 9 8 13 13 C 1.32888 * 120.59737 * 0.02562 * 12 10 9 14 14 N 1.37203 * 134.85501 * 179.97438 * 13 12 10 15 15 H 0.97000 * 126.27929 * 359.97438 * 14 13 12 16 16 C 1.36404 * 107.44007 * 180.02562 * 14 13 12 17 17 N 1.30126 * 109.96686 * 359.97438 * 16 14 13 18 18 C 1.35513 * 109.45263 * 0.02562 * 17 16 14 19 19 C 1.41539 * 119.63339 * 359.51447 * 6 5 4 20 20 C 1.41017 * 120.27340 * 180.26978 * 19 6 5 21 21 H 1.07996 * 120.00474 * 331.18448 * 20 19 6 22 22 C 1.39893 * 119.99310 * 151.17562 * 20 19 6 23 23 N 1.30894 * 120.00468 * 348.84153 * 22 20 19 24 24 Si 1.86804 * 119.99749 * 168.84190 * 22 20 19 25 25 H 1.48496 * 109.46973 * 89.99858 * 24 22 20 26 26 H 1.48498 * 109.47231 * 210.00279 * 24 22 20 27 27 H 1.48501 * 109.47063 * 330.00188 * 24 22 20 28 28 C 1.37832 * 119.81938 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00181 * 1 2 3 30 30 H 1.09005 * 109.47247 * 60.00512 * 1 2 3 31 31 H 1.09002 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.71805 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.90338 * 180.23584 * 5 4 3 34 34 H 0.96996 * 120.00394 * 159.81588 * 7 6 5 35 35 H 0.96698 * 113.99703 * 269.73041 * 11 10 9 36 36 H 1.08002 * 125.01644 * 180.02562 * 16 14 13 37 37 H 0.96997 * 119.99710 * 179.97438 * 23 22 20 38 38 H 1.08001 * 120.11112 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2830 2.3783 0.0005 5 6 1.8936 3.6166 0.0053 6 6 3.2777 3.7123 -0.0001 7 7 3.8915 4.9583 0.0004 8 6 3.1864 6.0771 -0.4077 9 7 1.9627 5.9618 -0.9132 10 6 1.2807 7.0272 -1.3068 11 8 0.0342 6.8562 -1.8102 12 7 1.7709 8.2517 -1.2206 13 6 2.9872 8.4602 -0.7276 14 7 3.7657 9.5685 -0.5086 15 1 3.5234 10.4875 -0.7025 16 6 4.9434 9.1408 0.0306 17 7 4.9311 7.8455 0.1540 18 6 3.7490 7.3604 -0.2970 19 6 4.0607 2.5333 -0.0001 20 6 5.4686 2.6149 0.0001 21 1 5.9604 3.4642 -0.4504 22 6 6.2280 1.5956 0.5843 23 7 5.6438 0.6822 1.3176 24 14 8.0761 1.5380 0.3177 25 1 8.7546 2.3158 1.3854 26 1 8.5389 0.1277 0.3624 27 1 8.4037 2.1248 -1.0065 28 6 3.4228 1.2792 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.2049 2.3130 0.0014 33 1 1.2920 4.5135 0.0095 34 1 4.8142 5.0444 0.2866 35 1 0.0112 6.7279 -2.7683 36 1 5.7645 9.7827 0.3140 37 1 6.1704 -0.0247 1.7222 38 1 4.0100 0.3728 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170231565.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:33 Heat of formation + Delta-G solvation = 66.797506 kcal Electronic energy + Delta-G solvation = -27071.890714 eV Core-core repulsion = 23109.872202 eV Total energy + Delta-G solvation = -3962.018512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.29670 -39.58155 -38.79305 -37.62322 -36.30783 -34.84232 -33.50520 -32.63511 -31.78205 -29.74281 -29.25300 -27.96192 -26.09831 -25.24450 -23.83938 -23.25059 -21.79962 -21.01038 -20.37869 -19.33214 -18.68024 -17.78710 -17.01320 -16.75889 -16.36542 -16.05362 -15.78442 -14.97048 -14.79691 -14.75440 -14.67159 -14.47961 -14.27941 -13.40597 -13.06803 -12.79412 -12.23237 -11.97396 -11.85518 -11.81611 -11.63120 -11.35646 -11.34686 -11.19342 -11.11641 -10.69041 -10.50601 -10.24391 -10.05154 -9.61928 -9.60138 -9.26650 -9.07117 -8.43788 -7.91388 -7.48610 -6.88272 -6.30139 -4.48716 0.97004 1.55815 2.45313 2.72268 2.80719 3.03382 3.05565 3.07539 3.15699 3.40005 3.78154 3.86290 4.11361 4.24334 4.34026 4.57786 4.77615 4.89793 5.10068 5.52825 5.64372 5.71375 5.77773 5.86804 5.94894 6.25278 6.38131 6.45437 6.74220 6.85265 6.89268 6.99833 7.21859 7.32543 7.36132 7.59242 7.60987 7.76942 7.85506 7.90416 8.05498 8.20067 8.32175 8.61116 8.66805 8.73608 8.87451 10.09874 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.004942 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.121046 B = 5664.476070 C = 8287.317618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.123 3.877 4 C -0.295 4.295 5 C -0.060 4.060 6 C -0.016 4.016 7 N -0.568 5.568 8 C 0.504 3.496 9 N -0.579 5.579 10 C 0.558 3.442 11 O -0.457 6.457 12 N -0.593 5.593 13 C 0.322 3.678 14 N -0.582 5.582 15 H 0.426 0.574 16 C 0.229 3.771 17 N -0.450 5.450 18 C -0.121 4.121 19 C 0.132 3.868 20 C -0.463 4.463 21 H 0.079 0.921 22 C 0.077 3.923 23 N -0.784 5.784 24 Si 0.911 3.089 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.261 1.261 28 C -0.179 4.179 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.140 0.860 34 H 0.426 0.574 35 H 0.409 0.591 36 H 0.222 0.778 37 H 0.283 0.717 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 11.218 -3.380 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.078 3.922 4 C -0.316 4.316 5 C -0.081 4.081 6 C -0.111 4.111 7 N -0.184 5.184 8 C 0.251 3.749 9 N -0.320 5.320 10 C 0.250 3.750 11 O -0.259 6.259 12 N -0.334 5.334 13 C 0.080 3.920 14 N -0.198 5.198 15 H 0.266 0.734 16 C -0.058 4.058 17 N -0.169 5.169 18 C -0.249 4.249 19 C 0.128 3.872 20 C -0.493 4.493 21 H 0.097 0.903 22 C -0.142 4.142 23 N -0.408 5.408 24 Si 0.735 3.265 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.184 1.184 28 C -0.200 4.200 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.157 0.843 34 H 0.266 0.734 35 H 0.267 0.733 36 H 0.238 0.762 37 H 0.094 0.906 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.760 10.014 -2.690 10.730 hybrid contribution 0.994 1.188 -0.495 1.626 sum -1.766 11.202 -3.185 11.779 Atomic orbital electron populations 1.22762 0.80741 1.01829 1.00609 1.86011 1.19512 1.28994 1.89830 1.19043 0.92503 0.82648 0.97978 1.20430 0.97590 0.92003 1.21534 1.20975 0.92740 0.97518 0.96844 1.17810 0.91814 0.82933 1.18568 1.41842 1.14623 1.03235 1.58679 1.17477 0.87029 0.83977 0.86398 1.67986 1.07456 1.31811 1.24786 1.19456 0.84394 0.81917 0.89276 1.84688 1.19674 1.93211 1.28355 1.66526 1.12450 1.25792 1.28593 1.18168 0.89864 0.87161 0.96787 1.42708 1.14603 1.08422 1.54110 0.73442 1.25250 0.89095 0.91950 0.99515 1.70162 1.19591 1.07903 1.19249 1.19521 0.95870 0.94217 1.15337 1.17028 0.92704 0.88470 0.89016 1.19316 0.90820 1.05862 1.33268 0.90285 1.25884 1.01416 0.94183 0.92734 1.69834 1.38349 1.10987 1.21670 0.86257 0.81691 0.78498 0.80056 1.19300 1.19991 1.18440 1.20366 0.89333 0.98566 1.11686 0.93636 0.93621 0.89963 0.88219 0.84316 0.73397 0.73275 0.76156 0.90573 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.33 -7.21 10.49 -19.59 -0.21 -7.42 16 3 C 0.12 2.95 6.67 -39.29 -0.26 2.69 16 4 C -0.30 -6.68 9.03 -39.20 -0.35 -7.04 16 5 C -0.06 -1.39 8.72 -39.46 -0.34 -1.73 16 6 C -0.02 -0.39 6.54 -83.21 -0.54 -0.93 16 7 N -0.57 -12.13 5.29 -9.29 -0.05 -12.18 16 8 C 0.50 10.07 7.36 -154.64 -1.14 8.93 16 9 N -0.58 -11.33 6.49 -13.75 -0.09 -11.42 16 10 C 0.56 9.73 8.68 -91.23 -0.79 8.93 16 11 O -0.46 -6.62 13.64 -18.23 -0.25 -6.87 16 12 N -0.59 -9.99 10.49 -14.04 -0.15 -10.14 16 13 C 0.32 5.12 8.51 -155.79 -1.33 3.80 16 14 N -0.58 -6.33 6.20 -13.23 -0.08 -6.41 16 15 H 0.43 2.98 8.96 -40.82 -0.37 2.61 16 16 C 0.23 2.44 12.99 -89.43 -1.16 1.28 16 17 N -0.45 -7.09 11.28 -11.80 -0.13 -7.22 16 18 C -0.12 -2.17 7.17 -84.50 -0.61 -2.78 16 19 C 0.13 3.38 5.56 -106.66 -0.59 2.79 16 20 C -0.46 -11.51 8.32 -37.91 -0.32 -11.82 16 21 H 0.08 1.87 7.12 -52.49 -0.37 1.49 16 22 C 0.08 1.85 5.24 -17.33 -0.09 1.76 16 23 N -0.78 -19.63 10.86 55.55 0.60 -19.02 16 24 Si 0.91 18.00 29.57 -169.99 -5.03 12.97 16 25 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 26 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 27 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 28 C -0.18 -4.65 8.57 -38.80 -0.33 -4.98 16 29 H 0.05 0.71 7.65 -51.93 -0.40 0.31 16 30 H 0.05 0.69 7.65 -51.93 -0.40 0.30 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 2.01 6.26 -52.48 -0.33 1.68 16 33 H 0.14 3.12 5.21 -52.49 -0.27 2.84 16 34 H 0.43 8.87 7.42 -40.82 -0.30 8.57 16 35 H 0.41 3.70 9.06 45.56 0.41 4.12 16 36 H 0.22 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 38 H 0.13 3.58 6.23 -52.49 -0.33 3.25 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -32.49 328.86 -9.62 -42.12 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -2.33 Total: 18.15 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -6.87 Total: 2.47 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: 0.10 Total: -66.38 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.45 Total: -14.28 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.49 -9.62 -42.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170231565.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.914 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds