Wall clock time and date at job start Tue Mar 31 2020 15:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35951 * 116.99761 * 2 1 4 4 C 1.39432 * 119.81881 * 0.02562 * 3 2 1 5 5 C 1.38064 * 120.57019 * 179.77075 * 4 3 2 6 6 C 1.38744 * 120.20156 * 0.46500 * 5 4 3 7 7 N 1.38900 * 120.18193 * 179.79417 * 6 5 4 8 8 C 1.38396 * 119.99687 * 339.81017 * 7 6 5 9 9 N 1.32903 * 120.73512 * 354.05420 * 8 7 6 10 10 C 1.32483 * 121.14299 * 180.02562 * 9 8 7 11 11 O 1.35513 * 118.84063 * 180.27419 * 10 9 8 12 12 N 1.32173 * 122.32565 * 359.97438 * 10 9 8 13 13 C 1.32888 * 120.59737 * 0.02562 * 12 10 9 14 14 N 1.37203 * 134.85501 * 179.97438 * 13 12 10 15 15 H 0.97000 * 126.27929 * 359.97438 * 14 13 12 16 16 C 1.36404 * 107.44007 * 180.02562 * 14 13 12 17 17 N 1.30126 * 109.96686 * 359.97438 * 16 14 13 18 18 C 1.35513 * 109.45263 * 0.02562 * 17 16 14 19 19 C 1.41539 * 119.63339 * 359.51447 * 6 5 4 20 20 C 1.41017 * 120.27340 * 180.26978 * 19 6 5 21 21 H 1.07996 * 120.00474 * 331.18448 * 20 19 6 22 22 C 1.39893 * 119.99310 * 151.17562 * 20 19 6 23 23 N 1.30894 * 120.00468 * 348.84153 * 22 20 19 24 24 Si 1.86804 * 119.99749 * 168.84190 * 22 20 19 25 25 H 1.48496 * 109.46973 * 89.99858 * 24 22 20 26 26 H 1.48498 * 109.47231 * 210.00279 * 24 22 20 27 27 H 1.48501 * 109.47063 * 330.00188 * 24 22 20 28 28 C 1.37832 * 119.81938 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00181 * 1 2 3 30 30 H 1.09005 * 109.47247 * 60.00512 * 1 2 3 31 31 H 1.09002 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.71805 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.90338 * 180.23584 * 5 4 3 34 34 H 0.96996 * 120.00394 * 159.81588 * 7 6 5 35 35 H 0.96698 * 113.99703 * 269.73041 * 11 10 9 36 36 H 1.08002 * 125.01644 * 180.02562 * 16 14 13 37 37 H 0.96997 * 119.99710 * 179.97438 * 23 22 20 38 38 H 1.08001 * 120.11112 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2830 2.3783 0.0005 5 6 1.8936 3.6166 0.0053 6 6 3.2777 3.7123 -0.0001 7 7 3.8915 4.9583 0.0004 8 6 3.1864 6.0771 -0.4077 9 7 1.9627 5.9618 -0.9132 10 6 1.2807 7.0272 -1.3068 11 8 0.0342 6.8562 -1.8102 12 7 1.7709 8.2517 -1.2206 13 6 2.9872 8.4602 -0.7276 14 7 3.7657 9.5685 -0.5086 15 1 3.5234 10.4875 -0.7025 16 6 4.9434 9.1408 0.0306 17 7 4.9311 7.8455 0.1540 18 6 3.7490 7.3604 -0.2970 19 6 4.0607 2.5333 -0.0001 20 6 5.4686 2.6149 0.0001 21 1 5.9604 3.4642 -0.4504 22 6 6.2280 1.5956 0.5843 23 7 5.6438 0.6822 1.3176 24 14 8.0761 1.5380 0.3177 25 1 8.7546 2.3158 1.3854 26 1 8.5389 0.1277 0.3624 27 1 8.4037 2.1248 -1.0065 28 6 3.4228 1.2792 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.2049 2.3130 0.0014 33 1 1.2920 4.5135 0.0095 34 1 4.8142 5.0444 0.2866 35 1 0.0112 6.7279 -2.7683 36 1 5.7645 9.7827 0.3140 37 1 6.1704 -0.0247 1.7222 38 1 4.0100 0.3728 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170231565.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:32 Heat of formation + Delta-G solvation = 42.118924 kcal Electronic energy + Delta-G solvation = -27072.960858 eV Core-core repulsion = 23109.872202 eV Total energy + Delta-G solvation = -3963.088655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.48423 -40.96975 -40.37509 -39.13142 -37.69991 -36.33608 -35.23163 -33.94366 -33.08776 -31.53807 -30.69590 -29.42706 -27.59415 -27.00103 -25.17436 -24.57906 -23.26859 -22.39606 -21.99969 -20.63669 -19.89545 -19.51180 -18.39489 -18.15014 -17.91899 -17.64125 -17.11410 -16.59295 -16.30817 -16.20404 -15.95840 -15.89921 -15.27459 -14.94334 -14.65992 -14.47299 -13.89843 -13.53531 -13.40999 -13.15832 -13.01495 -12.91430 -12.80263 -12.69417 -12.61114 -12.31073 -11.96618 -11.88225 -11.49346 -11.18967 -11.11647 -10.85879 -10.45136 -9.85990 -9.39338 -9.28447 -8.65738 -8.01576 -6.34804 -0.30013 0.18774 0.97479 1.23849 1.37615 1.40950 1.51760 1.55571 1.78672 2.06539 2.21571 2.48046 2.70754 2.78606 2.85029 3.10203 3.58623 3.66395 3.69941 4.15109 4.35894 4.47818 4.50248 4.56702 4.64649 4.76608 4.78233 5.00028 5.08614 5.20918 5.23888 5.47104 5.53156 5.71815 5.80415 5.97213 6.08875 6.21375 6.31611 6.51527 6.57830 6.68827 6.80803 6.88107 6.90357 7.06401 7.23520 8.34871 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.004942 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.121046 B = 5664.476070 C = 8287.317618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.116 3.884 4 C -0.293 4.293 5 C -0.071 4.071 6 C -0.012 4.012 7 N -0.585 5.585 8 C 0.489 3.511 9 N -0.597 5.597 10 C 0.546 3.454 11 O -0.457 6.457 12 N -0.583 5.583 13 C 0.308 3.692 14 N -0.561 5.561 15 H 0.448 0.552 16 C 0.277 3.723 17 N -0.501 5.501 18 C -0.134 4.134 19 C 0.104 3.896 20 C -0.487 4.487 21 H 0.081 0.919 22 C 0.037 3.963 23 N -0.821 5.821 24 Si 0.982 3.018 25 H -0.259 1.259 26 H -0.270 1.270 27 H -0.259 1.259 28 C -0.208 4.208 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.423 0.577 35 H 0.430 0.570 36 H 0.284 0.716 37 H 0.288 0.712 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 14.239 -3.695 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.264 6.264 3 C 0.071 3.929 4 C -0.313 4.313 5 C -0.092 4.092 6 C -0.107 4.107 7 N -0.204 5.204 8 C 0.238 3.762 9 N -0.339 5.339 10 C 0.238 3.762 11 O -0.263 6.263 12 N -0.322 5.322 13 C 0.065 3.935 14 N -0.179 5.179 15 H 0.292 0.708 16 C -0.011 4.011 17 N -0.221 5.221 18 C -0.260 4.260 19 C 0.100 3.900 20 C -0.516 4.516 21 H 0.099 0.901 22 C -0.179 4.179 23 N -0.446 5.446 24 Si 0.803 3.197 25 H -0.184 1.184 26 H -0.194 1.194 27 H -0.183 1.183 28 C -0.229 4.229 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.164 0.836 34 H 0.263 0.737 35 H 0.292 0.708 36 H 0.299 0.701 37 H 0.098 0.902 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.532 13.111 -3.051 13.697 hybrid contribution 0.780 0.567 -0.438 1.059 sum -1.752 13.678 -3.489 14.224 Atomic orbital electron populations 1.23133 0.77731 1.04470 1.01429 1.85974 1.22645 1.28143 1.89653 1.19081 0.92206 0.83873 0.97695 1.20682 0.98787 0.91344 1.20479 1.21163 0.92682 0.98017 0.97314 1.17906 0.92107 0.83694 1.16983 1.41643 1.14681 1.02874 1.61205 1.17712 0.87345 0.84428 0.86717 1.67847 1.07787 1.33293 1.24955 1.19588 0.84997 0.81790 0.89821 1.84658 1.18132 1.93102 1.30386 1.66638 1.12688 1.25252 1.27664 1.18458 0.89710 0.88470 0.96897 1.42778 1.13714 1.08448 1.52935 0.70768 1.26588 0.89155 0.91012 0.94318 1.70205 1.19316 1.10435 1.22095 1.19602 0.97174 0.93791 1.15468 1.17327 0.93578 0.89091 0.90008 1.19507 0.91026 1.06768 1.34337 0.90062 1.26727 1.05860 0.93384 0.91904 1.69921 1.40152 1.11798 1.22736 0.85191 0.75913 0.78633 0.79955 1.18385 1.19430 1.18286 1.20310 0.90403 0.98078 1.14128 0.92947 0.92513 0.86553 0.85669 0.83616 0.73713 0.70783 0.70057 0.90151 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.80 113.37 1.11 1.96 16 2 O -0.35 -15.61 10.49 -93.00 -0.98 -16.59 16 3 C 0.12 5.80 6.67 22.46 0.15 5.95 16 4 C -0.29 -13.47 9.03 22.52 0.20 -13.27 16 5 C -0.07 -3.36 8.72 22.35 0.19 -3.17 16 6 C -0.01 -0.58 6.54 38.96 0.25 -0.33 16 7 N -0.59 -26.06 5.29 -183.30 -0.97 -27.03 16 8 C 0.49 19.83 7.36 133.47 0.98 20.82 16 9 N -0.60 -23.55 6.49 -310.24 -2.01 -25.56 16 10 C 0.55 18.61 8.68 180.56 1.57 20.18 16 11 O -0.46 -12.70 13.64 -88.16 -1.20 -13.90 16 12 N -0.58 -18.61 10.49 -311.33 -3.27 -21.87 16 13 C 0.31 9.11 8.51 133.87 1.14 10.25 16 14 N -0.56 -9.82 6.20 -195.76 -1.21 -11.03 16 15 H 0.45 4.02 8.96 -92.71 -0.83 3.19 16 16 C 0.28 4.60 12.99 179.93 2.34 6.94 16 17 N -0.50 -14.67 11.28 -191.26 -2.16 -16.83 16 18 C -0.13 -4.66 7.17 39.70 0.28 -4.37 16 19 C 0.10 5.65 5.56 -21.18 -0.12 5.53 16 20 C -0.49 -25.48 8.32 23.35 0.19 -25.28 16 21 H 0.08 4.04 7.12 -2.91 -0.02 4.02 16 22 C 0.04 1.83 5.24 85.23 0.45 2.28 16 23 N -0.82 -43.20 10.86 21.82 0.24 -42.97 16 24 Si 0.98 37.86 29.57 68.60 2.03 39.89 16 25 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 26 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 27 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 28 C -0.21 -11.50 8.57 22.78 0.20 -11.30 16 29 H 0.05 1.57 7.65 -2.39 -0.02 1.55 16 30 H 0.06 1.65 7.65 -2.38 -0.02 1.63 16 31 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.13 4.97 6.26 -2.91 -0.02 4.95 16 33 H 0.15 6.67 5.21 -2.91 -0.02 6.65 16 34 H 0.42 18.57 7.42 -92.71 -0.69 17.88 16 35 H 0.43 7.20 9.06 -74.06 -0.67 6.53 16 36 H 0.28 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 38 H 0.11 6.35 6.23 -2.91 -0.02 6.33 16 Total: -1.00 -76.01 328.86 -1.58 -77.59 By element: Atomic # 1 Polarization: 43.09 SS G_CDS: -0.99 Total: 42.10 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 8.94 Total: 16.18 kcal Atomic # 7 Polarization: -135.90 SS G_CDS: -9.38 Total: -145.29 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -2.18 Total: -30.49 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -76.01 -1.58 -77.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170231565.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.713 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds