Wall clock time and date at job start Tue Mar 31 2020 15:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49858 * 2 1 4 4 C 1.53191 * 109.49664 * 120.07005 * 2 1 3 5 5 N 1.46921 * 108.89350 * 65.24206 * 4 2 1 6 6 C 1.34780 * 120.63147 * 233.67667 * 5 4 2 7 7 O 1.21587 * 119.99817 * 355.50792 * 6 5 4 8 8 C 1.47515 * 120.00001 * 175.50253 * 6 5 4 9 9 C 1.36785 * 126.92754 * 186.49971 * 8 6 5 10 10 C 1.41407 * 103.83988 * 179.88208 * 9 8 6 11 11 Cl 1.73596 * 126.72910 * 180.14301 * 10 9 8 12 12 N 1.30234 * 106.54975 * 0.39409 * 10 9 8 13 13 O 1.20887 * 111.95500 * 359.74495 * 12 10 9 14 14 C 1.47200 * 118.55620 * 53.54128 * 5 4 2 15 15 C 1.53189 * 108.85561 * 306.47433 * 14 5 4 16 16 C 1.53042 * 109.30952 * 54.65369 * 15 14 5 17 17 H 1.08991 * 109.46583 * 58.65631 * 16 15 14 18 18 C 1.53005 * 109.45815 * 178.61520 * 16 15 14 19 19 N 1.46496 * 109.47332 * 295.06470 * 18 16 15 20 20 C 1.36929 * 120.00352 * 179.97438 * 19 18 16 21 21 H 1.08009 * 119.99968 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00341 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00169 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99888 * 0.02562 * 22 20 19 25 25 H 1.48508 * 109.47230 * 89.99762 * 24 22 20 26 26 H 1.48501 * 109.47121 * 209.99523 * 24 22 20 27 27 H 1.48497 * 109.47391 * 329.99958 * 24 22 20 28 28 H 1.09005 * 109.47028 * 299.93569 * 1 2 3 29 29 H 1.09004 * 109.47262 * 59.93018 * 1 2 3 30 30 H 1.09003 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.58591 * 185.10315 * 4 2 1 32 32 H 1.08996 * 109.58188 * 305.38115 * 4 2 1 33 33 H 1.08005 * 128.08134 * 359.97438 * 9 8 6 34 34 H 1.09005 * 109.53768 * 186.67052 * 14 5 4 35 35 H 1.09001 * 109.56317 * 66.29829 * 14 5 4 36 36 H 1.08999 * 109.49872 * 294.69700 * 15 14 5 37 37 H 1.09007 * 109.52525 * 174.61784 * 15 14 5 38 38 H 1.09000 * 109.47233 * 55.06952 * 18 16 15 39 39 H 1.09002 * 109.47448 * 175.06405 * 18 16 15 40 40 H 0.97001 * 119.99925 * 0.02562 * 19 18 16 41 41 H 0.97003 * 120.00297 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 1.6513 -2.1380 1.1735 6 6 0.9740 -2.7190 2.1835 7 8 0.7511 -2.0960 3.2036 8 6 0.5028 -4.1106 2.0513 9 6 -0.2964 -4.7943 2.9259 10 6 -0.4420 -6.0670 2.3270 11 17 -1.3536 -7.4079 2.9470 12 7 0.2464 -6.0379 1.2218 13 8 0.7777 -4.9660 1.0484 14 6 2.0139 -2.9040 -0.0301 15 6 1.5029 -2.1561 -1.2655 16 6 2.0408 -0.7234 -1.2482 17 1 3.1304 -0.7447 -1.2352 18 6 1.5606 0.0164 -2.4984 19 7 2.1467 -0.6048 -3.6888 20 6 1.8577 -0.1095 -4.9322 21 1 1.1980 0.7395 -5.0354 22 6 2.4134 -0.6978 -6.0600 23 7 2.1352 -0.2220 -7.2552 24 14 3.5548 -2.1656 -5.8815 25 1 2.7597 -3.4191 -5.9240 26 1 4.5388 -2.1657 -6.9938 27 1 4.2734 -2.0791 -4.5849 28 1 -0.3633 0.5129 0.8906 29 1 -0.3634 0.5149 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1275 -0.6460 1.2981 32 1 1.6027 -0.2710 2.1390 33 1 -0.7190 -4.4434 3.8559 34 1 1.5553 -3.8919 0.0146 35 1 3.0978 -3.0044 -0.0861 36 1 0.4132 -2.1358 -1.2536 37 1 1.8475 -2.6632 -2.1668 38 1 0.4736 -0.0381 -2.5579 39 1 1.8695 1.0603 -2.4440 40 1 2.7388 -1.3675 -3.5961 41 1 2.5233 -0.6333 -8.0434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185547160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:46 Heat of formation + Delta-G solvation = 50.527584 kcal Electronic energy + Delta-G solvation = -26072.649444 eV Core-core repulsion = 22211.032910 eV Total energy + Delta-G solvation = -3861.616535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.66844 -40.66512 -38.44877 -37.59729 -35.37971 -34.26680 -33.71622 -32.50338 -31.79144 -30.78475 -27.44928 -27.33154 -24.61349 -24.22225 -23.28034 -23.11237 -21.58672 -20.98460 -19.06062 -18.45036 -18.25899 -17.51202 -17.01930 -16.46973 -15.69946 -15.50652 -15.01866 -14.53784 -14.47519 -14.27335 -14.15532 -13.87917 -13.63263 -13.22562 -12.99058 -12.89197 -12.78589 -12.47641 -12.36479 -11.77402 -11.59976 -11.51173 -11.43080 -11.13288 -10.88444 -10.74230 -10.57249 -10.52894 -10.31611 -10.26355 -10.22581 -10.07415 -9.60254 -8.95206 -8.90450 -7.24316 -5.78442 -3.13910 0.24558 0.95054 1.32203 2.00366 2.51000 2.70749 3.34618 3.36678 3.43598 3.65586 4.04226 4.19434 4.45969 4.56957 4.68722 4.70108 4.78957 4.89739 5.07384 5.14217 5.33999 5.37081 5.49354 5.52562 5.56669 5.62508 5.68432 5.75142 5.86480 5.97532 6.08406 6.18029 6.22774 6.25553 6.42162 6.64818 6.77481 6.85930 7.33419 7.58561 7.97985 8.40613 9.19811 9.92021 10.11604 11.40150 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.003189 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.156765 B = 8776.713052 C =10118.402520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.117 3.883 5 N -0.587 5.587 6 C 0.604 3.396 7 O -0.513 6.513 8 C -0.065 4.065 9 C -0.137 4.137 10 C 0.053 3.947 11 Cl 0.032 6.968 12 N -0.328 5.328 13 O 0.136 5.864 14 C 0.091 3.909 15 C -0.129 4.129 16 C -0.095 4.095 17 H 0.074 0.926 18 C 0.163 3.837 19 N -0.755 5.755 20 C -0.243 4.243 21 H 0.089 0.911 22 C 0.004 3.996 23 N -0.935 5.935 24 Si 0.883 3.117 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.277 1.277 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.194 0.806 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.030 0.970 39 H 0.027 0.973 40 H 0.360 0.640 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 -8.957 24.038 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.107 0.893 4 C -0.004 4.004 5 N -0.319 5.319 6 C 0.388 3.612 7 O -0.390 6.390 8 C -0.130 4.130 9 C -0.160 4.160 10 C -0.130 4.130 11 Cl 0.060 6.940 12 N -0.031 5.031 13 O 0.063 5.937 14 C -0.031 4.031 15 C -0.167 4.167 16 C -0.113 4.113 17 H 0.092 0.908 18 C 0.036 3.964 19 N -0.401 5.401 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.714 3.286 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.211 0.789 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.193 0.807 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.407 -9.490 23.506 25.577 hybrid contribution 0.471 -0.987 0.500 1.202 sum -2.937 -10.476 24.006 26.356 Atomic orbital electron populations 1.21902 0.94664 1.02005 1.01995 1.21487 0.96869 0.99745 0.93664 0.89288 1.21861 1.00135 0.78657 0.99784 1.48102 1.53755 1.12385 1.17671 1.16532 0.78684 0.82022 0.83954 1.90875 1.57669 1.61969 1.28469 1.24256 1.03349 0.94681 0.90716 1.22730 1.00290 0.90615 1.02402 1.24046 1.01748 0.92821 0.94377 1.98432 1.69802 1.41463 1.84303 1.73880 1.09279 1.02797 1.17178 1.85233 1.53940 1.15462 1.39065 1.22450 1.01386 0.95282 0.83973 1.22001 1.01987 0.95984 0.96768 1.21398 1.00435 0.94550 0.94967 0.90789 1.20689 0.96351 0.94872 0.84511 1.42726 1.57356 1.37444 1.02604 1.19050 1.24105 1.12304 0.81875 0.89303 1.24678 1.00263 0.99157 0.95118 1.69700 1.48336 1.43186 0.97061 0.86566 0.81272 0.83834 0.76960 1.21007 1.21750 1.20313 0.93025 0.91503 0.92726 0.90614 0.88598 0.78860 0.88432 0.90027 0.90721 0.89613 0.95191 0.95543 0.80718 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.38 37.16 0.31 -1.33 16 2 C -0.10 -1.04 2.72 -90.50 -0.25 -1.28 16 3 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.12 1.13 5.80 -3.71 -0.02 1.10 16 5 N -0.59 -6.02 2.43 -173.79 -0.42 -6.44 16 6 C 0.60 6.71 7.69 -12.48 -0.10 6.61 16 7 O -0.51 -6.77 16.35 5.29 0.09 -6.69 16 8 C -0.06 -0.66 6.99 -36.33 -0.25 -0.91 16 9 C -0.14 -1.24 10.96 -38.90 -0.43 -1.66 16 10 C 0.05 0.53 7.97 -17.02 -0.14 0.39 16 11 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.26 16 12 N -0.33 -3.73 12.05 32.82 0.40 -3.33 16 13 O 0.14 1.45 7.76 15.54 0.12 1.57 16 14 C 0.09 0.92 6.34 -3.56 -0.02 0.90 16 15 C -0.13 -1.60 4.91 -26.61 -0.13 -1.73 16 16 C -0.09 -1.23 1.96 -90.57 -0.18 -1.41 16 17 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 18 C 0.16 2.87 5.19 -4.04 -0.02 2.85 16 19 N -0.76 -16.99 5.12 -59.91 -0.31 -17.30 16 20 C -0.24 -6.73 10.47 -15.06 -0.16 -6.89 16 21 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 23 N -0.93 -29.13 13.97 55.49 0.78 -28.35 16 24 Si 0.88 21.56 27.73 -169.99 -4.71 16.84 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.80 6.59 -51.93 -0.34 0.45 16 30 H 0.05 0.63 5.97 -51.93 -0.31 0.32 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.95 7.03 -51.93 -0.37 0.58 16 33 H 0.19 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.10 0.96 3.86 -54.52 -0.21 0.75 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.96 6.33 -51.93 -0.33 0.63 16 37 H 0.09 1.20 7.15 -51.92 -0.37 0.83 16 38 H 0.03 0.55 6.74 -51.93 -0.35 0.20 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.36 7.81 4.70 -40.82 -0.19 7.62 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -31.87 342.02 -6.93 -38.80 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.02 Total: 4.36 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.47 Total: -3.36 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.44 Total: -55.42 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: 0.21 Total: -5.12 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.87 -6.93 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185547160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.327 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds