Wall clock time and date at job start Tue Mar 31 2020 15:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49858 * 2 1 4 4 C 1.53191 * 109.49664 * 120.07005 * 2 1 3 5 5 N 1.46921 * 108.89350 * 65.24206 * 4 2 1 6 6 C 1.34780 * 120.63147 * 233.67667 * 5 4 2 7 7 O 1.21587 * 119.99817 * 355.50792 * 6 5 4 8 8 C 1.47515 * 120.00001 * 175.50253 * 6 5 4 9 9 C 1.36785 * 126.92754 * 186.49971 * 8 6 5 10 10 C 1.41407 * 103.83988 * 179.88208 * 9 8 6 11 11 Cl 1.73596 * 126.72910 * 180.14301 * 10 9 8 12 12 N 1.30234 * 106.54975 * 0.39409 * 10 9 8 13 13 O 1.20887 * 111.95500 * 359.74495 * 12 10 9 14 14 C 1.47200 * 118.55620 * 53.54128 * 5 4 2 15 15 C 1.53189 * 108.85561 * 306.47433 * 14 5 4 16 16 C 1.53042 * 109.30952 * 54.65369 * 15 14 5 17 17 H 1.08991 * 109.46583 * 58.65631 * 16 15 14 18 18 C 1.53005 * 109.45815 * 178.61520 * 16 15 14 19 19 N 1.46496 * 109.47332 * 295.06470 * 18 16 15 20 20 C 1.36929 * 120.00352 * 179.97438 * 19 18 16 21 21 H 1.08009 * 119.99968 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00341 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00169 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99888 * 0.02562 * 22 20 19 25 25 H 1.48508 * 109.47230 * 89.99762 * 24 22 20 26 26 H 1.48501 * 109.47121 * 209.99523 * 24 22 20 27 27 H 1.48497 * 109.47391 * 329.99958 * 24 22 20 28 28 H 1.09005 * 109.47028 * 299.93569 * 1 2 3 29 29 H 1.09004 * 109.47262 * 59.93018 * 1 2 3 30 30 H 1.09003 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.58591 * 185.10315 * 4 2 1 32 32 H 1.08996 * 109.58188 * 305.38115 * 4 2 1 33 33 H 1.08005 * 128.08134 * 359.97438 * 9 8 6 34 34 H 1.09005 * 109.53768 * 186.67052 * 14 5 4 35 35 H 1.09001 * 109.56317 * 66.29829 * 14 5 4 36 36 H 1.08999 * 109.49872 * 294.69700 * 15 14 5 37 37 H 1.09007 * 109.52525 * 174.61784 * 15 14 5 38 38 H 1.09000 * 109.47233 * 55.06952 * 18 16 15 39 39 H 1.09002 * 109.47448 * 175.06405 * 18 16 15 40 40 H 0.97001 * 119.99925 * 0.02562 * 19 18 16 41 41 H 0.97003 * 120.00297 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 1.6513 -2.1380 1.1735 6 6 0.9740 -2.7190 2.1835 7 8 0.7511 -2.0960 3.2036 8 6 0.5028 -4.1106 2.0513 9 6 -0.2964 -4.7943 2.9259 10 6 -0.4420 -6.0670 2.3270 11 17 -1.3536 -7.4079 2.9470 12 7 0.2464 -6.0379 1.2218 13 8 0.7777 -4.9660 1.0484 14 6 2.0139 -2.9040 -0.0301 15 6 1.5029 -2.1561 -1.2655 16 6 2.0408 -0.7234 -1.2482 17 1 3.1304 -0.7447 -1.2352 18 6 1.5606 0.0164 -2.4984 19 7 2.1467 -0.6048 -3.6888 20 6 1.8577 -0.1095 -4.9322 21 1 1.1980 0.7395 -5.0354 22 6 2.4134 -0.6978 -6.0600 23 7 2.1352 -0.2220 -7.2552 24 14 3.5548 -2.1656 -5.8815 25 1 2.7597 -3.4191 -5.9240 26 1 4.5388 -2.1657 -6.9938 27 1 4.2734 -2.0791 -4.5849 28 1 -0.3633 0.5129 0.8906 29 1 -0.3634 0.5149 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1275 -0.6460 1.2981 32 1 1.6027 -0.2710 2.1390 33 1 -0.7190 -4.4434 3.8559 34 1 1.5553 -3.8919 0.0146 35 1 3.0978 -3.0044 -0.0861 36 1 0.4132 -2.1358 -1.2536 37 1 1.8475 -2.6632 -2.1668 38 1 0.4736 -0.0381 -2.5579 39 1 1.8695 1.0603 -2.4440 40 1 2.7388 -1.3675 -3.5961 41 1 2.5233 -0.6333 -8.0434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185547160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:45 Heat of formation + Delta-G solvation = 30.316724 kcal Electronic energy + Delta-G solvation = -26073.525853 eV Core-core repulsion = 22211.032910 eV Total energy + Delta-G solvation = -3862.492943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.43951 -41.54377 -39.44229 -38.28737 -36.78391 -35.25363 -34.77526 -33.70389 -32.93583 -32.27121 -28.82526 -28.17882 -25.79675 -24.99413 -24.59553 -24.12029 -22.83437 -22.00754 -20.18865 -19.57031 -19.23900 -18.83244 -17.86215 -17.34845 -16.76892 -16.45566 -16.27896 -15.94008 -15.56352 -15.22520 -15.16766 -14.98485 -14.79372 -14.62896 -13.95876 -13.89769 -13.76337 -13.66836 -13.48909 -13.24097 -12.84715 -12.69135 -12.42182 -12.24911 -12.17433 -12.03116 -11.83320 -11.67386 -11.57101 -11.29055 -11.27952 -11.14693 -11.06983 -10.90698 -9.79980 -9.24612 -8.00296 -5.33189 -0.52628 0.23994 0.57932 1.22779 1.39589 1.44311 1.51553 1.69412 1.91957 2.51281 2.89832 3.26833 3.31700 3.45905 3.57672 3.73543 3.78156 3.82935 3.98485 4.11011 4.27917 4.42615 4.45868 4.51179 4.66543 4.73107 4.75256 4.82429 4.90113 4.97460 5.07573 5.15527 5.17924 5.26056 5.28832 5.45272 5.60222 5.78947 6.03076 6.23905 6.55096 6.78197 7.11820 7.88348 8.07955 9.21651 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.003189 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.156765 B = 8776.713052 C =10118.402520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.101 0.899 4 C 0.120 3.880 5 N -0.585 5.585 6 C 0.607 3.393 7 O -0.536 6.536 8 C -0.074 4.074 9 C -0.126 4.126 10 C 0.050 3.950 11 Cl 0.044 6.956 12 N -0.349 5.349 13 O 0.135 5.865 14 C 0.099 3.901 15 C -0.128 4.128 16 C -0.084 4.084 17 H 0.084 0.916 18 C 0.160 3.840 19 N -0.755 5.755 20 C -0.232 4.232 21 H 0.052 0.948 22 C -0.068 4.068 23 N -0.988 5.988 24 Si 0.955 3.045 25 H -0.277 1.277 26 H -0.299 1.299 27 H -0.244 1.244 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.215 0.785 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.367 0.633 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 -10.284 26.569 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.119 0.881 4 C -0.001 4.001 5 N -0.316 5.316 6 C 0.392 3.608 7 O -0.414 6.414 8 C -0.139 4.139 9 C -0.149 4.149 10 C -0.133 4.133 11 Cl 0.072 6.928 12 N -0.053 5.053 13 O 0.062 5.938 14 C -0.023 4.023 15 C -0.166 4.166 16 C -0.103 4.103 17 H 0.102 0.898 18 C 0.034 3.966 19 N -0.402 5.402 20 C -0.364 4.364 21 H 0.070 0.930 22 C -0.259 4.259 23 N -0.639 5.639 24 Si 0.782 3.218 25 H -0.203 1.203 26 H -0.226 1.226 27 H -0.168 1.168 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.232 0.768 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.201 0.799 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.312 -10.814 26.094 28.341 hybrid contribution -0.003 -0.499 -0.268 0.566 sum -2.314 -11.312 25.826 28.290 Atomic orbital electron populations 1.21868 0.95200 1.01490 1.01786 1.21439 0.96317 1.00297 0.92965 0.88126 1.21902 1.01301 0.78034 0.98870 1.48137 1.53330 1.12680 1.17446 1.16550 0.78314 0.82140 0.83746 1.90866 1.58593 1.62608 1.29317 1.24206 1.04061 0.94527 0.91126 1.23016 0.99294 0.89927 1.02651 1.24241 1.01493 0.93519 0.94079 1.98438 1.69397 1.40904 1.84040 1.73856 1.10115 1.03218 1.18074 1.85202 1.54035 1.15353 1.39213 1.22405 1.02430 0.94896 0.82593 1.21939 1.01523 0.95661 0.97497 1.21294 1.00911 0.94587 0.93490 0.89816 1.20850 0.95719 0.95053 0.84964 1.42708 1.57591 1.37704 1.02154 1.19027 1.22393 1.10753 0.84187 0.93002 1.25555 1.02808 1.02915 0.94597 1.69898 1.50443 1.45429 0.98098 0.85410 0.78861 0.79511 0.78061 1.20346 1.22600 1.16761 0.91964 0.92973 0.93393 0.88600 0.88451 0.76850 0.88062 0.88112 0.91588 0.90966 0.95986 0.95989 0.79889 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.38 71.98 0.60 -2.43 16 2 C -0.09 -1.70 2.72 -10.71 -0.03 -1.73 16 3 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.12 1.93 5.80 86.36 0.50 2.44 16 5 N -0.59 -10.43 2.43 -822.00 -1.99 -12.42 16 6 C 0.61 12.15 7.69 86.69 0.67 12.81 16 7 O -0.54 -12.99 16.35 -3.99 -0.07 -13.05 16 8 C -0.07 -1.36 6.99 24.38 0.17 -1.19 16 9 C -0.13 -2.01 10.96 22.71 0.25 -1.77 16 10 C 0.05 0.89 7.97 85.71 0.68 1.58 16 11 Cl 0.04 0.66 29.33 -2.72 -0.08 0.58 16 12 N -0.35 -7.40 12.05 -51.02 -0.61 -8.01 16 13 O 0.13 2.63 7.76 65.79 0.51 3.14 16 14 C 0.10 1.72 6.34 86.31 0.55 2.26 16 15 C -0.13 -2.92 4.91 30.67 0.15 -2.77 16 16 C -0.08 -2.00 1.96 -10.76 -0.02 -2.03 16 17 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 18 C 0.16 5.53 5.19 86.38 0.45 5.98 16 19 N -0.76 -33.36 5.12 -343.45 -1.76 -35.12 16 20 C -0.23 -13.07 10.47 84.03 0.88 -12.19 16 21 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 22 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 23 N -0.99 -63.32 13.97 21.65 0.30 -63.02 16 24 Si 0.95 44.16 27.73 68.60 1.90 46.07 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 27 H -0.24 -9.80 6.52 99.48 0.65 -9.15 16 28 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.05 1.22 6.59 -2.38 -0.02 1.21 16 30 H 0.05 1.05 5.97 -2.39 -0.01 1.04 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.63 7.03 -2.39 -0.02 1.62 16 33 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.10 1.75 3.86 -43.52 -0.17 1.59 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.62 6.33 -2.39 -0.02 1.60 16 37 H 0.07 1.87 7.15 -2.38 -0.02 1.85 16 38 H 0.02 0.81 6.74 -2.39 -0.02 0.79 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.37 15.13 4.70 -92.71 -0.44 14.69 16 41 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -69.75 342.02 3.95 -65.80 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.43 Total: 18.55 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 5.32 Total: -2.51 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -4.06 Total: -118.57 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.45 Total: -9.91 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.07 kcal Atomic # 17 Polarization: 0.66 SS G_CDS: -0.08 Total: 0.58 kcal Total: -69.75 3.95 -65.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185547160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.113 kcal (2) G-P(sol) polarization free energy of solvation -69.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds