Wall clock time and date at job start Tue Mar 31 2020 15:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.52593 * 2 1 4 4 C 1.53199 * 109.49599 * 120.07575 * 2 1 3 5 5 N 1.46920 * 108.77148 * 174.58555 * 4 2 1 6 6 C 1.34782 * 120.62903 * 126.41841 * 5 4 2 7 7 O 1.21585 * 119.99878 * 353.02510 * 6 5 4 8 8 C 1.47517 * 120.00053 * 173.02633 * 6 5 4 9 9 C 1.36783 * 126.93132 * 172.78156 * 8 6 5 10 10 C 1.41400 * 103.84199 * 179.87924 * 9 8 6 11 11 Cl 1.73603 * 126.72699 * 180.14132 * 10 9 8 12 12 N 1.30231 * 106.55218 * 0.38608 * 10 9 8 13 13 O 1.20887 * 111.95154 * 359.74985 * 12 10 9 14 14 C 1.46920 * 118.74344 * 306.39105 * 5 4 2 15 15 C 1.53192 * 108.77624 * 53.61175 * 14 5 4 16 16 C 1.53035 * 109.49642 * 239.91288 * 2 1 3 17 17 H 1.08995 * 109.46203 * 298.70200 * 16 2 1 18 18 C 1.53000 * 109.44887 * 58.67443 * 16 2 1 19 19 N 1.46504 * 109.46996 * 185.03436 * 18 16 2 20 20 C 1.36939 * 119.99695 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99911 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99872 * 179.97438 * 20 19 18 23 23 N 1.31622 * 120.00325 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00042 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47241 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46879 * 120.00392 * 24 22 20 27 27 H 1.48496 * 109.47026 * 240.00122 * 24 22 20 28 28 H 1.08995 * 109.47275 * 180.08859 * 1 2 3 29 29 H 1.09002 * 109.47024 * 300.08654 * 1 2 3 30 30 H 1.08999 * 109.47051 * 60.07972 * 1 2 3 31 31 H 1.09003 * 109.58320 * 54.79729 * 4 2 1 32 32 H 1.09003 * 109.58618 * 294.37640 * 4 2 1 33 33 H 1.08007 * 128.07515 * 359.97438 * 9 8 6 34 34 H 1.09002 * 109.58564 * 293.82373 * 14 5 4 35 35 H 1.08997 * 109.59221 * 173.39881 * 14 5 4 36 36 H 1.09000 * 109.49934 * 185.42097 * 15 14 5 37 37 H 1.08992 * 109.52318 * 65.32927 * 15 14 5 38 38 H 1.09005 * 109.46893 * 305.02885 * 18 16 2 39 39 H 1.08997 * 109.47492 * 65.03136 * 18 16 2 40 40 H 0.96993 * 120.00298 * 359.97438 * 19 18 16 41 41 H 0.96995 * 120.00387 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 3.5045 -0.8290 1.1697 6 6 4.2811 -0.3863 2.1784 7 8 3.7835 0.2192 3.1080 8 6 5.7347 -0.6363 2.1546 9 6 6.6684 -0.1395 3.0221 10 6 7.8870 -0.6848 2.5562 11 17 9.4639 -0.4352 3.2379 12 7 7.5953 -1.4068 1.5123 13 8 6.4108 -1.3948 1.2712 14 6 4.1053 -1.4267 -0.0306 15 6 3.5709 -0.6951 -1.2659 16 6 2.0408 -0.7232 -1.2482 17 1 1.6967 -1.7573 -1.2351 18 6 1.5037 -0.0231 -2.4982 19 7 1.8923 -0.7834 -3.6887 20 6 1.5207 -0.3458 -4.9319 21 1 0.9409 0.5595 -5.0347 22 6 1.8892 -1.0658 -6.0599 23 7 2.5954 -2.1695 -5.9346 24 14 1.3818 -0.4693 -7.7559 25 1 0.5990 0.7858 -7.6254 26 1 2.5944 -0.2131 -8.5738 27 1 0.5490 -1.5062 -8.4166 28 1 -0.3633 -1.0276 0.0016 29 1 -0.3633 0.5152 0.8892 30 1 -0.3633 0.5126 -0.8907 31 1 1.6052 -1.7215 1.2982 32 1 1.7637 -0.1578 2.1390 33 1 6.5112 0.5151 3.8667 34 1 3.8375 -2.4818 -0.0864 35 1 5.1895 -1.3246 0.0139 36 1 3.9334 -1.1899 -2.1669 37 1 3.9159 0.3387 -1.2546 38 1 0.4167 0.0352 -2.4431 39 1 1.9190 0.9829 -2.5580 40 1 2.4127 -1.5967 -3.5963 41 1 2.8527 -2.6728 -6.7228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185547161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:49 Heat of formation + Delta-G solvation = 40.698921 kcal Electronic energy + Delta-G solvation = -25697.852380 eV Core-core repulsion = 21835.809643 eV Total energy + Delta-G solvation = -3862.042737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.60917 -40.47351 -38.26153 -37.55096 -35.27266 -34.17653 -33.76297 -32.43664 -31.97211 -30.38807 -27.23525 -26.99927 -24.53972 -24.08274 -23.38735 -22.50006 -21.52030 -20.89814 -19.69414 -18.42413 -18.06432 -17.19425 -16.86293 -16.48352 -15.53901 -15.36806 -14.87554 -14.56781 -14.36874 -14.20273 -13.87378 -13.63384 -13.46827 -13.20087 -13.07317 -12.75746 -12.61800 -12.45096 -12.01414 -11.89734 -11.66791 -11.49955 -11.03395 -10.95639 -10.85584 -10.66120 -10.52146 -10.44685 -10.25977 -10.24284 -10.15051 -9.95453 -9.66375 -8.90655 -8.82938 -6.91960 -5.78170 -3.06211 0.30258 0.99945 1.37157 2.08260 2.56583 2.79157 3.42289 3.48294 3.50233 3.71746 4.16259 4.25240 4.52180 4.56790 4.78035 4.85362 4.87407 5.03737 5.19319 5.23604 5.38359 5.48095 5.55865 5.59703 5.69149 5.77247 5.84053 5.92011 6.01068 6.11711 6.22933 6.26643 6.33387 6.44095 6.56436 6.79317 6.88686 6.95586 7.38485 7.64455 7.69645 8.41190 9.52520 10.10437 10.44786 11.44787 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.002816 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.137995 B = 9940.437269 C =11509.944307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.075 0.925 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.603 3.397 7 O -0.515 6.515 8 C -0.063 4.063 9 C -0.138 4.138 10 C 0.052 3.948 11 Cl 0.032 6.968 12 N -0.328 5.328 13 O 0.139 5.861 14 C 0.094 3.906 15 C -0.125 4.125 16 C -0.090 4.090 17 H 0.075 0.925 18 C 0.157 3.843 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.194 0.806 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.017 0.983 40 H 0.383 0.617 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.611 2.417 21.055 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.004 4.004 5 N -0.321 5.321 6 C 0.387 3.613 7 O -0.392 6.392 8 C -0.129 4.129 9 C -0.161 4.161 10 C -0.131 4.131 11 Cl 0.059 6.941 12 N -0.029 5.029 13 O 0.065 5.935 14 C -0.028 4.028 15 C -0.163 4.163 16 C -0.109 4.109 17 H 0.093 0.907 18 C 0.029 3.971 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.211 0.789 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.035 0.965 40 H 0.217 0.783 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.147 2.133 20.650 21.956 hybrid contribution 0.065 0.467 -0.444 0.648 sum 7.212 2.599 20.206 21.611 Atomic orbital electron populations 1.21831 0.94078 1.02329 1.02233 1.21478 0.96355 1.00038 0.93885 0.90638 1.21890 0.77035 1.01616 0.99824 1.48097 1.07649 1.58805 1.17569 1.16550 0.81760 0.79768 0.83185 1.90868 1.71972 1.40873 1.35445 1.24234 0.95683 0.99330 0.93641 1.22724 0.88243 1.02738 1.02439 1.24044 0.91173 1.01568 0.96325 1.98429 1.18967 1.95090 1.81570 1.73884 0.95634 1.18004 1.15426 1.85264 1.12442 1.52845 1.42994 1.22329 0.98427 0.98183 0.83850 1.21945 0.96107 1.01210 0.97032 1.21371 0.94573 1.00371 0.94614 0.90701 1.20751 0.96715 0.94059 0.85564 1.42383 1.65423 1.28985 1.00857 1.19258 1.27560 1.06224 0.83815 0.91244 1.24721 1.00938 0.97548 0.97799 1.69655 1.42815 1.17293 1.28453 0.86142 0.77665 0.77751 0.84792 1.20609 1.21903 1.21894 0.92383 0.92890 0.91154 0.90574 0.88728 0.78880 0.90005 0.88873 0.88766 0.91615 0.95717 0.96547 0.78292 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.82 37.16 0.33 -1.26 16 2 C -0.10 -1.15 2.41 -90.50 -0.22 -1.36 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.25 5.73 -3.71 -0.02 1.23 16 5 N -0.59 -6.67 2.97 -174.01 -0.52 -7.18 16 6 C 0.60 7.21 7.68 -12.48 -0.10 7.12 16 7 O -0.52 -7.21 16.35 5.29 0.09 -7.13 16 8 C -0.06 -0.69 6.90 -36.33 -0.25 -0.94 16 9 C -0.14 -1.32 10.97 -38.91 -0.43 -1.75 16 10 C 0.05 0.54 7.97 -17.03 -0.14 0.40 16 11 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 12 N -0.33 -3.88 12.05 32.82 0.40 -3.49 16 13 O 0.14 1.57 7.93 15.54 0.12 1.69 16 14 C 0.09 1.06 6.15 -3.71 -0.02 1.03 16 15 C -0.12 -1.72 5.25 -26.61 -0.14 -1.86 16 16 C -0.09 -1.29 1.73 -90.58 -0.16 -1.45 16 17 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.16 2.93 5.41 -4.04 -0.02 2.90 16 19 N -0.73 -17.60 5.32 -59.91 -0.32 -17.92 16 20 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 24 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.84 6.29 -51.93 -0.33 0.52 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.02 7.00 -51.93 -0.36 0.65 16 33 H 0.19 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.01 4.26 -52.60 -0.22 0.79 16 36 H 0.09 1.51 7.15 -51.93 -0.37 1.14 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.47 6.14 -51.93 -0.32 0.15 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.38 9.58 6.85 -40.82 -0.28 9.31 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -30.67 349.39 -7.43 -38.10 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.23 Total: 4.70 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.41 Total: -3.05 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: 0.21 Total: -5.44 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.67 -7.43 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185547161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.796 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds