Wall clock time and date at job start Tue Mar 31 2020 15:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.52593 * 2 1 4 4 C 1.53199 * 109.49599 * 120.07575 * 2 1 3 5 5 N 1.46920 * 108.77148 * 174.58555 * 4 2 1 6 6 C 1.34782 * 120.62903 * 126.41841 * 5 4 2 7 7 O 1.21585 * 119.99878 * 353.02510 * 6 5 4 8 8 C 1.47517 * 120.00053 * 173.02633 * 6 5 4 9 9 C 1.36783 * 126.93132 * 172.78156 * 8 6 5 10 10 C 1.41400 * 103.84199 * 179.87924 * 9 8 6 11 11 Cl 1.73603 * 126.72699 * 180.14132 * 10 9 8 12 12 N 1.30231 * 106.55218 * 0.38608 * 10 9 8 13 13 O 1.20887 * 111.95154 * 359.74985 * 12 10 9 14 14 C 1.46920 * 118.74344 * 306.39105 * 5 4 2 15 15 C 1.53192 * 108.77624 * 53.61175 * 14 5 4 16 16 C 1.53035 * 109.49642 * 239.91288 * 2 1 3 17 17 H 1.08995 * 109.46203 * 298.70200 * 16 2 1 18 18 C 1.53000 * 109.44887 * 58.67443 * 16 2 1 19 19 N 1.46504 * 109.46996 * 185.03436 * 18 16 2 20 20 C 1.36939 * 119.99695 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99911 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99872 * 179.97438 * 20 19 18 23 23 N 1.31622 * 120.00325 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00042 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47241 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46879 * 120.00392 * 24 22 20 27 27 H 1.48496 * 109.47026 * 240.00122 * 24 22 20 28 28 H 1.08995 * 109.47275 * 180.08859 * 1 2 3 29 29 H 1.09002 * 109.47024 * 300.08654 * 1 2 3 30 30 H 1.08999 * 109.47051 * 60.07972 * 1 2 3 31 31 H 1.09003 * 109.58320 * 54.79729 * 4 2 1 32 32 H 1.09003 * 109.58618 * 294.37640 * 4 2 1 33 33 H 1.08007 * 128.07515 * 359.97438 * 9 8 6 34 34 H 1.09002 * 109.58564 * 293.82373 * 14 5 4 35 35 H 1.08997 * 109.59221 * 173.39881 * 14 5 4 36 36 H 1.09000 * 109.49934 * 185.42097 * 15 14 5 37 37 H 1.08992 * 109.52318 * 65.32927 * 15 14 5 38 38 H 1.09005 * 109.46893 * 305.02885 * 18 16 2 39 39 H 1.08997 * 109.47492 * 65.03136 * 18 16 2 40 40 H 0.96993 * 120.00298 * 359.97438 * 19 18 16 41 41 H 0.96995 * 120.00387 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 3.5045 -0.8290 1.1697 6 6 4.2811 -0.3863 2.1784 7 8 3.7835 0.2192 3.1080 8 6 5.7347 -0.6363 2.1546 9 6 6.6684 -0.1395 3.0221 10 6 7.8870 -0.6848 2.5562 11 17 9.4639 -0.4352 3.2379 12 7 7.5953 -1.4068 1.5123 13 8 6.4108 -1.3948 1.2712 14 6 4.1053 -1.4267 -0.0306 15 6 3.5709 -0.6951 -1.2659 16 6 2.0408 -0.7232 -1.2482 17 1 1.6967 -1.7573 -1.2351 18 6 1.5037 -0.0231 -2.4982 19 7 1.8923 -0.7834 -3.6887 20 6 1.5207 -0.3458 -4.9319 21 1 0.9409 0.5595 -5.0347 22 6 1.8892 -1.0658 -6.0599 23 7 2.5954 -2.1695 -5.9346 24 14 1.3818 -0.4693 -7.7559 25 1 0.5990 0.7858 -7.6254 26 1 2.5944 -0.2131 -8.5738 27 1 0.5490 -1.5062 -8.4166 28 1 -0.3633 -1.0276 0.0016 29 1 -0.3633 0.5152 0.8892 30 1 -0.3633 0.5126 -0.8907 31 1 1.6052 -1.7215 1.2982 32 1 1.7637 -0.1578 2.1390 33 1 6.5112 0.5151 3.8667 34 1 3.8375 -2.4818 -0.0864 35 1 5.1895 -1.3246 0.0139 36 1 3.9334 -1.1899 -2.1669 37 1 3.9159 0.3387 -1.2546 38 1 0.4167 0.0352 -2.4431 39 1 1.9190 0.9829 -2.5580 40 1 2.4127 -1.5967 -3.5963 41 1 2.8527 -2.6728 -6.7228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185547161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:48 Heat of formation + Delta-G solvation = 22.108050 kcal Electronic energy + Delta-G solvation = -25698.658541 eV Core-core repulsion = 21835.809643 eV Total energy + Delta-G solvation = -3862.848898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.43967 -41.44778 -39.35437 -38.28608 -36.67676 -35.29809 -34.84225 -33.64315 -33.04127 -32.05106 -28.50807 -28.05138 -25.89745 -24.91238 -24.81166 -23.58484 -22.74015 -21.90166 -20.79732 -19.32086 -19.12119 -18.92090 -17.79165 -17.44058 -16.76309 -16.39930 -16.24004 -15.72850 -15.54792 -15.25707 -15.17885 -15.05491 -14.54986 -14.32048 -14.04203 -13.93964 -13.76948 -13.55604 -13.13533 -12.93504 -12.87572 -12.79606 -12.67518 -12.25383 -12.12914 -11.96112 -11.87525 -11.68439 -11.61395 -11.33749 -11.22564 -11.16528 -11.06441 -10.86685 -9.82388 -8.93184 -7.92557 -5.19607 -0.53913 0.23862 0.57469 1.22965 1.48560 1.48970 1.58635 1.66086 1.91580 2.57862 2.88986 3.30340 3.41390 3.45959 3.71176 3.73906 3.79714 3.85111 3.97510 4.27240 4.30668 4.44237 4.51330 4.54233 4.64043 4.70631 4.76264 4.81264 4.90704 5.00979 5.12841 5.15130 5.20536 5.27161 5.37476 5.48498 5.53304 5.61981 6.01617 6.30838 6.52602 6.75483 7.37592 8.14994 8.38186 9.30924 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.002816 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.137995 B = 9940.437269 C =11509.944307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.589 5.589 6 C 0.607 3.393 7 O -0.536 6.536 8 C -0.074 4.074 9 C -0.124 4.124 10 C 0.050 3.950 11 Cl 0.046 6.954 12 N -0.348 5.348 13 O 0.135 5.865 14 C 0.104 3.896 15 C -0.120 4.120 16 C -0.080 4.080 17 H 0.074 0.926 18 C 0.156 3.844 19 N -0.742 5.742 20 C -0.241 4.241 21 H 0.072 0.928 22 C -0.074 4.074 23 N -0.966 5.966 24 Si 0.968 3.032 25 H -0.268 1.268 26 H -0.295 1.295 27 H -0.293 1.293 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.216 0.784 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.010 0.990 40 H 0.376 0.624 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 2.928 22.466 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.319 5.319 6 C 0.393 3.607 7 O -0.414 6.414 8 C -0.140 4.140 9 C -0.147 4.147 10 C -0.133 4.133 11 Cl 0.074 6.926 12 N -0.051 5.051 13 O 0.061 5.939 14 C -0.018 4.018 15 C -0.158 4.158 16 C -0.099 4.099 17 H 0.093 0.907 18 C 0.029 3.971 19 N -0.385 5.385 20 C -0.373 4.373 21 H 0.090 0.910 22 C -0.266 4.266 23 N -0.617 5.617 24 Si 0.797 3.203 25 H -0.193 1.193 26 H -0.222 1.222 27 H -0.221 1.221 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.233 0.767 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.028 0.972 40 H 0.208 0.792 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.861 2.671 22.084 23.279 hybrid contribution 0.176 0.365 -0.822 0.917 sum 7.037 3.036 21.262 22.601 Atomic orbital electron populations 1.21801 0.93094 1.02806 1.02485 1.21378 0.97095 0.99375 0.92968 0.91285 1.21935 0.76613 1.02487 0.99055 1.48116 1.07993 1.58506 1.17326 1.16575 0.82052 0.79224 0.82884 1.90858 1.72488 1.41841 1.36183 1.24145 0.95431 1.00113 0.94273 1.23024 0.87418 1.01957 1.02305 1.24251 0.92110 1.01062 0.95920 1.98436 1.17996 1.94947 1.81224 1.73867 0.95889 1.18946 1.16376 1.85230 1.12331 1.53114 1.43224 1.22215 0.98643 0.98375 0.82590 1.21819 0.95801 1.00832 0.97342 1.21258 0.94767 1.00076 0.93796 0.90748 1.20905 0.96915 0.93540 0.85692 1.42575 1.65231 1.29139 1.01595 1.19623 1.26512 1.05891 0.85250 0.91046 1.25477 1.01792 0.98084 1.01264 1.69796 1.44425 1.18547 1.28982 0.85154 0.77075 0.77558 0.80472 1.19289 1.22220 1.22057 0.91812 0.90862 0.92657 0.88867 0.88227 0.76702 0.88694 0.88357 0.91336 0.92321 0.95324 0.97235 0.79160 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.82 71.98 0.63 -2.20 16 2 C -0.09 -1.94 2.41 -10.71 -0.03 -1.96 16 3 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.12 2.29 5.73 86.37 0.49 2.79 16 5 N -0.59 -12.33 2.97 -822.69 -2.44 -14.78 16 6 C 0.61 13.55 7.68 86.69 0.67 14.21 16 7 O -0.54 -14.03 16.35 -3.98 -0.07 -14.10 16 8 C -0.07 -1.50 6.90 24.38 0.17 -1.34 16 9 C -0.12 -2.14 10.97 22.71 0.25 -1.89 16 10 C 0.05 0.95 7.97 85.71 0.68 1.63 16 11 Cl 0.05 0.72 29.33 -2.72 -0.08 0.64 16 12 N -0.35 -7.91 12.05 -51.03 -0.61 -8.53 16 13 O 0.14 2.91 7.93 65.81 0.52 3.43 16 14 C 0.10 2.23 6.15 86.36 0.53 2.76 16 15 C -0.12 -3.29 5.25 30.67 0.16 -3.13 16 16 C -0.08 -2.24 1.73 -10.77 -0.02 -2.26 16 17 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 18 C 0.16 5.82 5.41 86.38 0.47 6.29 16 19 N -0.74 -36.14 5.32 -343.44 -1.83 -37.97 16 20 C -0.24 -13.20 9.99 84.03 0.84 -12.36 16 21 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 22 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 23 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16 24 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.26 6.29 -2.39 -0.02 1.24 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 1.89 7.00 -2.39 -0.02 1.87 16 33 H 0.22 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 2.06 4.26 -13.03 -0.06 2.01 16 36 H 0.07 2.26 7.15 -2.39 -0.02 2.24 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.03 1.07 6.14 -2.38 -0.01 1.06 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.38 19.22 6.85 -92.71 -0.63 18.59 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -65.06 349.39 3.51 -61.54 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.39 Total: 20.86 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.32 Total: -1.17 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -4.60 Total: -118.96 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.46 Total: -10.67 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -65.06 3.51 -61.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185547161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.652 kcal (2) G-P(sol) polarization free energy of solvation -65.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds