Wall clock time and date at job start Tue Mar 31 2020 15:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.49846 * 2 1 4 4 C 1.52765 * 109.56313 * 240.03022 * 2 1 3 5 5 N 1.46927 * 109.00611 * 185.55554 * 4 2 1 6 6 C 1.34780 * 120.63091 * 233.58205 * 5 4 2 7 7 O 1.21579 * 119.99972 * 184.34386 * 6 5 4 8 8 C 1.47520 * 119.99580 * 4.34605 * 6 5 4 9 9 C 1.36787 * 126.92320 * 173.46945 * 8 6 5 10 10 C 1.41409 * 103.83326 * 179.97438 * 9 8 6 11 11 Cl 1.73605 * 126.72248 * 180.02562 * 10 9 8 12 12 N 1.30225 * 106.55260 * 0.02562 * 10 9 8 13 13 O 1.20885 * 111.95765 * 359.97438 * 12 10 9 14 14 C 1.46931 * 118.73725 * 53.30842 * 5 4 2 15 15 C 1.53191 * 108.77764 * 306.64142 * 14 5 4 16 16 C 1.53036 * 109.31080 * 54.63659 * 15 14 5 17 17 H 1.09000 * 109.46213 * 58.63795 * 16 15 14 18 18 C 1.53001 * 109.46206 * 178.61352 * 16 15 14 19 19 N 1.46504 * 109.47024 * 295.00204 * 18 16 15 20 20 C 1.36936 * 119.99878 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00036 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99770 * 179.97438 * 20 19 18 23 23 N 1.31613 * 120.00075 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99719 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46773 * 90.00516 * 24 22 20 26 26 H 1.48506 * 109.47104 * 210.00276 * 24 22 20 27 27 H 1.48493 * 109.47324 * 330.00415 * 24 22 20 28 28 H 1.08998 * 109.46877 * 299.94161 * 1 2 3 29 29 H 1.09008 * 109.46674 * 59.93457 * 1 2 3 30 30 H 1.08997 * 109.47623 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.50721 * 65.67422 * 4 2 1 32 32 H 1.08993 * 109.43023 * 305.38608 * 4 2 1 33 33 H 1.07995 * 128.08346 * 0.02562 * 9 8 6 34 34 H 1.08999 * 109.58518 * 66.43657 * 14 5 4 35 35 H 1.09002 * 109.58659 * 186.85305 * 14 5 4 36 36 H 1.08996 * 109.49445 * 174.58728 * 15 14 5 37 37 H 1.09004 * 109.49607 * 294.65355 * 15 14 5 38 38 H 1.09001 * 109.46901 * 54.99630 * 18 16 15 39 39 H 1.09001 * 109.47303 * 175.00207 * 18 16 15 40 40 H 0.96997 * 119.99460 * 359.97438 * 19 18 16 41 41 H 0.97004 * 120.00228 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7191 -1.2470 5 7 3.5046 -0.8295 -1.1693 6 6 4.2812 -0.3863 -2.1778 7 8 5.4846 -0.5545 -2.1373 8 6 3.6709 0.3028 -3.3306 9 6 4.3266 0.9153 -4.3630 10 6 3.2836 1.4065 -5.1819 11 17 3.4575 2.2893 -6.6666 12 7 2.1670 1.0670 -4.6041 13 8 2.3565 0.4555 -3.5786 14 6 4.1052 -1.4268 0.0313 15 6 3.5708 -0.6948 1.2663 16 6 2.0408 -0.7228 1.2486 17 1 1.6966 -1.7569 1.2355 18 6 1.5036 -0.0226 2.4984 19 7 1.8916 -0.7830 3.6890 20 6 1.5207 -0.3449 4.9322 21 1 0.9419 0.5611 5.0350 22 6 1.8879 -1.0657 6.0603 23 7 2.5929 -2.1700 5.9349 24 14 1.3826 -0.4676 7.7562 25 1 0.0659 -1.0528 8.1154 26 1 2.3998 -0.8884 8.7530 27 1 1.2803 1.0138 7.7485 28 1 -0.3633 0.5129 0.8905 29 1 -0.3633 0.5149 -0.8895 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7646 -0.1502 -2.1345 32 1 1.6021 -1.7152 -1.2970 33 1 5.3919 1.0026 -4.5173 34 1 3.8375 -2.4819 0.0874 35 1 5.1895 -1.3248 -0.0133 36 1 3.9333 -1.1892 2.1674 37 1 3.9164 0.3390 1.2543 38 1 1.9194 0.9833 2.5583 39 1 0.4166 0.0362 2.4431 40 1 2.4112 -1.5969 3.5965 41 1 2.8498 -2.6735 6.7232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185547162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:52 Heat of formation + Delta-G solvation = 43.800787 kcal Electronic energy + Delta-G solvation = -25736.082563 eV Core-core repulsion = 21874.174333 eV Total energy + Delta-G solvation = -3861.908230 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.66478 -40.47513 -38.31846 -37.60254 -35.25753 -34.20828 -33.48110 -33.00129 -31.82901 -30.40708 -27.19001 -26.79424 -24.87687 -24.17980 -23.47875 -22.33475 -21.48279 -20.85931 -19.71881 -18.43830 -18.23937 -17.21127 -16.92095 -16.45958 -15.54157 -15.39953 -14.88195 -14.68333 -14.38018 -14.16375 -13.90495 -13.61142 -13.41267 -13.22824 -13.07716 -12.81611 -12.67056 -12.41918 -11.99773 -11.90202 -11.66080 -11.55664 -11.04181 -10.94331 -10.84514 -10.67361 -10.56557 -10.43476 -10.28647 -10.23422 -10.19417 -9.98086 -9.65740 -8.90533 -8.82953 -6.91997 -5.77992 -3.06012 0.26344 0.94308 1.32340 2.03153 2.56595 2.76057 3.42690 3.48138 3.49577 3.67241 4.06398 4.21298 4.47595 4.56999 4.72275 4.81107 4.92481 5.10397 5.16964 5.26306 5.33949 5.50728 5.56743 5.59793 5.68119 5.79212 5.87256 5.89928 5.96134 6.14710 6.21456 6.25706 6.33029 6.44141 6.61395 6.78238 6.88231 6.95453 7.35315 7.63966 7.69166 8.41378 9.52596 10.10622 10.44962 11.44948 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.028321 B = 0.002417 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.442603 B =11583.217189 C =12110.176139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.075 0.925 4 C 0.098 3.902 5 N -0.589 5.589 6 C 0.601 3.399 7 O -0.512 6.512 8 C -0.062 4.062 9 C -0.138 4.138 10 C 0.054 3.946 11 Cl 0.032 6.968 12 N -0.331 5.331 13 O 0.134 5.866 14 C 0.111 3.889 15 C -0.126 4.126 16 C -0.090 4.090 17 H 0.075 0.925 18 C 0.157 3.843 19 N -0.732 5.732 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.194 0.806 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.017 0.983 39 H 0.025 0.975 40 H 0.383 0.617 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.144 4.911 -24.174 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.025 4.025 5 N -0.320 5.320 6 C 0.385 3.615 7 O -0.388 6.388 8 C -0.127 4.127 9 C -0.161 4.161 10 C -0.129 4.129 11 Cl 0.059 6.941 12 N -0.035 5.035 13 O 0.062 5.938 14 C -0.010 4.010 15 C -0.164 4.164 16 C -0.109 4.109 17 H 0.093 0.907 18 C 0.029 3.971 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.212 0.788 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.479 5.180 -24.451 24.998 hybrid contribution 0.594 0.207 0.754 0.982 sum 1.073 5.386 -23.697 24.325 Atomic orbital electron populations 1.21845 0.93950 1.02453 1.02325 1.21388 0.96494 0.99961 0.93852 0.90702 1.22335 0.78220 1.02145 0.99787 1.48118 1.07576 1.58505 1.17824 1.16579 0.85869 0.78767 0.80302 1.90885 1.12913 1.57178 1.77803 1.24305 0.83502 1.04920 0.99982 1.22742 1.02136 0.99172 0.92096 1.24038 0.90371 1.03365 0.95125 1.98431 1.96992 1.72080 1.26548 1.73846 1.23080 1.09520 0.97023 1.85219 1.24671 1.53948 1.29969 1.21917 0.99448 0.97175 0.82434 1.21965 0.95870 1.01353 0.97228 1.21372 0.94783 1.00322 0.94454 0.90699 1.20749 0.96685 0.94061 0.85578 1.42371 1.65493 1.28916 1.00839 1.19212 1.27699 1.06182 0.83831 0.91293 1.24723 1.00930 0.97541 0.97818 1.69646 1.42768 1.17260 1.28583 0.86205 0.77643 0.77942 0.84490 1.21760 1.21789 1.20816 0.91090 0.92805 0.92284 0.88493 0.90048 0.78845 0.90472 0.88687 0.88835 0.91623 0.96558 0.95738 0.78293 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.82 37.16 0.33 -1.23 16 2 C -0.10 -1.10 2.40 -90.72 -0.22 -1.32 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C 0.10 0.97 5.59 -3.93 -0.02 0.95 16 5 N -0.59 -6.67 2.98 -174.26 -0.52 -7.19 16 6 C 0.60 7.20 7.69 -12.48 -0.10 7.10 16 7 O -0.51 -7.40 16.35 5.30 0.09 -7.32 16 8 C -0.06 -0.64 6.99 -36.32 -0.25 -0.89 16 9 C -0.14 -1.26 10.96 -38.90 -0.43 -1.68 16 10 C 0.05 0.52 7.97 -17.03 -0.14 0.38 16 11 Cl 0.03 0.25 29.33 -51.86 -1.52 -1.27 16 12 N -0.33 -3.54 12.05 32.82 0.40 -3.14 16 13 O 0.13 1.36 7.75 15.56 0.12 1.48 16 14 C 0.11 1.34 6.42 -3.71 -0.02 1.31 16 15 C -0.13 -1.78 5.25 -26.61 -0.14 -1.92 16 16 C -0.09 -1.29 1.73 -90.58 -0.16 -1.45 16 17 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.16 2.93 5.41 -4.04 -0.02 2.91 16 19 N -0.73 -17.65 5.32 -59.91 -0.32 -17.97 16 20 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 24 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H 0.07 0.84 6.29 -51.93 -0.33 0.51 16 29 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.89 3.82 -54.73 -0.21 0.68 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.19 7.03 -51.93 -0.37 0.82 16 36 H 0.09 1.53 7.15 -51.93 -0.37 1.16 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.02 0.46 6.14 -51.93 -0.32 0.15 16 40 H 0.38 9.63 6.85 -40.82 -0.28 9.35 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -30.70 349.05 -7.43 -38.13 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.22 Total: 4.80 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.41 Total: -2.99 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.28 Total: -55.23 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: 0.21 Total: -5.83 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.52 Total: -1.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.70 -7.43 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185547162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.932 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds