Wall clock time and date at job start Tue Mar 31 2020 15:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.49846 * 2 1 4 4 C 1.52765 * 109.56313 * 240.03022 * 2 1 3 5 5 N 1.46927 * 109.00611 * 185.55554 * 4 2 1 6 6 C 1.34780 * 120.63091 * 233.58205 * 5 4 2 7 7 O 1.21579 * 119.99972 * 184.34386 * 6 5 4 8 8 C 1.47520 * 119.99580 * 4.34605 * 6 5 4 9 9 C 1.36787 * 126.92320 * 173.46945 * 8 6 5 10 10 C 1.41409 * 103.83326 * 179.97438 * 9 8 6 11 11 Cl 1.73605 * 126.72248 * 180.02562 * 10 9 8 12 12 N 1.30225 * 106.55260 * 0.02562 * 10 9 8 13 13 O 1.20885 * 111.95765 * 359.97438 * 12 10 9 14 14 C 1.46931 * 118.73725 * 53.30842 * 5 4 2 15 15 C 1.53191 * 108.77764 * 306.64142 * 14 5 4 16 16 C 1.53036 * 109.31080 * 54.63659 * 15 14 5 17 17 H 1.09000 * 109.46213 * 58.63795 * 16 15 14 18 18 C 1.53001 * 109.46206 * 178.61352 * 16 15 14 19 19 N 1.46504 * 109.47024 * 295.00204 * 18 16 15 20 20 C 1.36936 * 119.99878 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00036 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99770 * 179.97438 * 20 19 18 23 23 N 1.31613 * 120.00075 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99719 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46773 * 90.00516 * 24 22 20 26 26 H 1.48506 * 109.47104 * 210.00276 * 24 22 20 27 27 H 1.48493 * 109.47324 * 330.00415 * 24 22 20 28 28 H 1.08998 * 109.46877 * 299.94161 * 1 2 3 29 29 H 1.09008 * 109.46674 * 59.93457 * 1 2 3 30 30 H 1.08997 * 109.47623 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.50721 * 65.67422 * 4 2 1 32 32 H 1.08993 * 109.43023 * 305.38608 * 4 2 1 33 33 H 1.07995 * 128.08346 * 0.02562 * 9 8 6 34 34 H 1.08999 * 109.58518 * 66.43657 * 14 5 4 35 35 H 1.09002 * 109.58659 * 186.85305 * 14 5 4 36 36 H 1.08996 * 109.49445 * 174.58728 * 15 14 5 37 37 H 1.09004 * 109.49607 * 294.65355 * 15 14 5 38 38 H 1.09001 * 109.46901 * 54.99630 * 18 16 15 39 39 H 1.09001 * 109.47303 * 175.00207 * 18 16 15 40 40 H 0.96997 * 119.99460 * 359.97438 * 19 18 16 41 41 H 0.97004 * 120.00228 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7191 -1.2470 5 7 3.5046 -0.8295 -1.1693 6 6 4.2812 -0.3863 -2.1778 7 8 5.4846 -0.5545 -2.1373 8 6 3.6709 0.3028 -3.3306 9 6 4.3266 0.9153 -4.3630 10 6 3.2836 1.4065 -5.1819 11 17 3.4575 2.2893 -6.6666 12 7 2.1670 1.0670 -4.6041 13 8 2.3565 0.4555 -3.5786 14 6 4.1052 -1.4268 0.0313 15 6 3.5708 -0.6948 1.2663 16 6 2.0408 -0.7228 1.2486 17 1 1.6966 -1.7569 1.2355 18 6 1.5036 -0.0226 2.4984 19 7 1.8916 -0.7830 3.6890 20 6 1.5207 -0.3449 4.9322 21 1 0.9419 0.5611 5.0350 22 6 1.8879 -1.0657 6.0603 23 7 2.5929 -2.1700 5.9349 24 14 1.3826 -0.4676 7.7562 25 1 0.0659 -1.0528 8.1154 26 1 2.3998 -0.8884 8.7530 27 1 1.2803 1.0138 7.7485 28 1 -0.3633 0.5129 0.8905 29 1 -0.3633 0.5149 -0.8895 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7646 -0.1502 -2.1345 32 1 1.6021 -1.7152 -1.2970 33 1 5.3919 1.0026 -4.5173 34 1 3.8375 -2.4819 0.0874 35 1 5.1895 -1.3248 -0.0133 36 1 3.9333 -1.1892 2.1674 37 1 3.9164 0.3390 1.2543 38 1 1.9194 0.9833 2.5583 39 1 0.4166 0.0362 2.4431 40 1 2.4112 -1.5969 3.5965 41 1 2.8498 -2.6735 6.7232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185547162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:51 Heat of formation + Delta-G solvation = 24.982517 kcal Electronic energy + Delta-G solvation = -25736.898585 eV Core-core repulsion = 21874.174333 eV Total energy + Delta-G solvation = -3862.724252 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.43149 -41.45559 -39.40546 -38.27261 -36.69828 -35.13312 -34.78279 -33.92337 -33.10924 -31.98801 -28.59801 -27.68510 -26.11738 -25.13914 -24.85262 -23.33234 -22.80049 -21.78540 -20.83598 -19.31221 -19.21648 -18.92220 -17.85082 -17.41589 -16.75321 -16.41187 -16.24119 -15.76015 -15.53956 -15.31917 -15.14831 -15.07389 -14.46676 -14.31012 -14.05703 -13.89800 -13.82877 -13.55622 -13.12672 -12.93818 -12.82833 -12.79959 -12.66662 -12.25003 -12.17868 -11.94196 -11.88763 -11.68708 -11.57611 -11.37035 -11.27676 -11.10271 -11.06113 -10.86558 -9.83893 -8.93554 -7.92718 -5.19836 -0.53617 0.24959 0.58273 1.18772 1.48626 1.49522 1.57861 1.67285 1.89761 2.57881 2.89750 3.26243 3.41015 3.46336 3.71678 3.75155 3.76900 3.84765 3.99937 4.25191 4.31076 4.44508 4.51858 4.54498 4.66115 4.69004 4.78024 4.83967 4.87679 4.98909 5.13572 5.14914 5.16525 5.28834 5.41893 5.48192 5.52961 5.60526 6.02865 6.30516 6.53823 6.76162 7.37162 8.14881 8.37749 9.30685 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.028321 B = 0.002417 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.442603 B =11583.217189 C =12110.176139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.071 0.929 4 C 0.102 3.898 5 N -0.588 5.588 6 C 0.604 3.396 7 O -0.540 6.540 8 C -0.071 4.071 9 C -0.126 4.126 10 C 0.051 3.949 11 Cl 0.046 6.954 12 N -0.343 5.343 13 O 0.137 5.863 14 C 0.120 3.880 15 C -0.119 4.119 16 C -0.080 4.080 17 H 0.074 0.926 18 C 0.156 3.844 19 N -0.743 5.743 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.075 4.075 23 N -0.967 5.967 24 Si 0.969 3.031 25 H -0.287 1.287 26 H -0.296 1.296 27 H -0.272 1.272 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.212 0.788 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.010 0.990 39 H 0.030 0.970 40 H 0.375 0.625 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 5.619 -25.808 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.090 0.910 4 C -0.020 4.020 5 N -0.319 5.319 6 C 0.390 3.610 7 O -0.419 6.419 8 C -0.136 4.136 9 C -0.149 4.149 10 C -0.132 4.132 11 Cl 0.074 6.926 12 N -0.047 5.047 13 O 0.064 5.936 14 C -0.002 4.002 15 C -0.157 4.157 16 C -0.099 4.099 17 H 0.092 0.908 18 C 0.030 3.970 19 N -0.386 5.386 20 C -0.374 4.374 21 H 0.090 0.910 22 C -0.267 4.267 23 N -0.618 5.618 24 Si 0.799 3.201 25 H -0.214 1.214 26 H -0.223 1.223 27 H -0.197 1.197 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.229 0.771 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.028 0.972 39 H 0.048 0.952 40 H 0.208 0.792 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.329 5.924 -26.118 26.784 hybrid contribution 0.814 0.063 1.171 1.428 sum 0.485 5.987 -24.947 25.660 Atomic orbital electron populations 1.21818 0.92925 1.02935 1.02625 1.21306 0.97250 0.99473 0.92855 0.91035 1.22412 0.77209 1.03136 0.99268 1.48134 1.08188 1.58166 1.17375 1.16673 0.85497 0.78304 0.80570 1.90871 1.14112 1.58327 1.78548 1.24015 0.83857 1.05814 0.99960 1.23010 1.02941 0.97747 0.91163 1.24193 0.90142 1.03242 0.95604 1.98440 1.96920 1.71673 1.25603 1.73825 1.23653 1.09916 0.97292 1.85176 1.24443 1.54005 1.29929 1.21750 0.99122 0.97517 0.81796 1.21819 0.95837 1.00784 0.97269 1.21259 0.94658 1.00097 0.93872 0.90772 1.20910 0.96955 0.93523 0.85658 1.42573 1.65307 1.29066 1.01623 1.19595 1.26644 1.05885 0.85259 0.90997 1.25497 1.01784 0.98080 1.01355 1.69793 1.44419 1.18541 1.29086 0.85203 0.76967 0.77893 0.80085 1.21419 1.22297 1.19698 0.92636 0.90641 0.91738 0.87196 0.88358 0.77073 0.89215 0.89191 0.91538 0.92450 0.97234 0.95204 0.79223 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.82 71.98 0.63 -2.11 16 2 C -0.09 -1.87 2.40 -10.86 -0.03 -1.90 16 3 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.10 1.78 5.59 86.22 0.48 2.26 16 5 N -0.59 -12.45 2.98 -823.51 -2.45 -14.91 16 6 C 0.60 13.64 7.69 86.69 0.67 14.31 16 7 O -0.54 -15.16 16.35 -3.97 -0.06 -15.23 16 8 C -0.07 -1.33 6.99 24.38 0.17 -1.16 16 9 C -0.13 -2.02 10.96 22.71 0.25 -1.77 16 10 C 0.05 0.87 7.97 85.71 0.68 1.55 16 11 Cl 0.05 0.63 29.33 -2.72 -0.08 0.55 16 12 N -0.34 -6.60 12.05 -51.03 -0.61 -7.22 16 13 O 0.14 2.47 7.75 65.87 0.51 2.98 16 14 C 0.12 2.80 6.42 86.36 0.55 3.36 16 15 C -0.12 -3.38 5.25 30.67 0.16 -3.22 16 16 C -0.08 -2.24 1.73 -10.77 -0.02 -2.26 16 17 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 18 C 0.16 5.82 5.41 86.38 0.47 6.29 16 19 N -0.74 -36.33 5.32 -343.44 -1.83 -38.15 16 20 C -0.24 -13.30 9.99 84.03 0.84 -12.46 16 21 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 23 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 24 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 H 0.05 1.23 6.29 -2.39 -0.02 1.21 16 29 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 1.72 3.82 -46.69 -0.18 1.54 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.21 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 2.24 7.03 -2.39 -0.02 2.22 16 36 H 0.07 2.26 7.15 -2.39 -0.02 2.25 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.03 1.11 6.14 -2.39 -0.01 1.09 16 40 H 0.38 19.35 6.85 -92.71 -0.63 18.71 16 41 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -65.47 349.05 3.38 -62.09 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.27 Total: 20.95 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.33 Total: -0.89 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -4.61 Total: -118.28 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.45 Total: -12.24 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 17 Polarization: 0.63 SS G_CDS: -0.08 Total: 0.55 kcal Total: -65.47 3.38 -62.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185547162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.072 kcal (2) G-P(sol) polarization free energy of solvation -65.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds