Wall clock time and date at job start Tue Mar 31 2020 15:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21322 * 119.99736 * 2 1 4 4 C 1.46571 * 120.00051 * 179.71939 * 2 1 3 5 5 C 1.40273 * 120.25384 * 86.36565 * 4 2 1 6 6 F 1.35101 * 120.08716 * 0.02562 * 5 4 2 7 7 C 1.38050 * 119.82082 * 179.97438 * 5 4 2 8 8 C 1.38498 * 120.34224 * 0.02562 * 7 5 4 9 9 C 1.38099 * 120.52352 * 359.95468 * 8 7 5 10 10 C 1.38777 * 120.16960 * 359.78752 * 9 8 7 11 11 N 1.39058 * 120.17155 * 180.23462 * 10 9 8 12 12 C 1.34773 * 120.00145 * 338.94474 * 11 10 9 13 13 O 1.21542 * 120.00348 * 354.60401 * 12 11 10 14 14 C 1.47842 * 119.99653 * 174.60812 * 12 11 10 15 15 C 1.39937 * 120.02965 * 359.71755 * 14 12 11 16 16 C 1.38326 * 120.35885 * 179.77012 * 15 14 12 17 17 C 1.37758 * 120.41237 * 0.51323 * 16 15 14 18 18 C 1.40756 * 120.04168 * 359.74378 * 17 16 15 19 19 C 1.41443 * 120.17623 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99407 * 329.76227 * 19 18 17 21 21 C 1.39932 * 120.00106 * 149.76819 * 19 18 17 22 22 N 1.30829 * 119.99900 * 347.00515 * 21 19 18 23 23 Si 1.86801 * 120.00144 * 167.00995 * 21 19 18 24 24 H 1.48503 * 109.46955 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47410 * 119.99621 * 23 21 19 26 26 H 1.48495 * 109.46869 * 239.99646 * 23 21 19 27 27 C 1.39018 * 120.02603 * 180.02562 * 14 12 11 28 28 H 1.09000 * 109.47022 * 95.01675 * 1 2 3 29 29 H 1.08995 * 109.47120 * 215.01318 * 1 2 3 30 30 H 1.08999 * 109.47664 * 335.01754 * 1 2 3 31 31 H 1.07999 * 119.82881 * 180.02562 * 7 5 4 32 32 H 1.07999 * 119.73768 * 179.97438 * 8 7 5 33 33 H 1.08001 * 119.91724 * 180.02562 * 9 8 7 34 34 H 0.97007 * 119.99579 * 158.95217 * 11 10 9 35 35 H 1.08002 * 119.82159 * 0.02960 * 15 14 12 36 36 H 1.07996 * 119.79599 * 180.25943 * 16 15 14 37 37 H 1.08001 * 119.97908 * 179.76533 * 17 16 15 38 38 H 0.97001 * 119.99712 * 180.02562 * 22 21 19 39 39 H 1.07999 * 120.20383 * 359.95101 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2399 -1.2693 0.0062 5 6 2.5267 -1.9257 -1.1998 6 9 2.1285 -1.3894 -2.3741 7 6 3.2180 -3.1205 -1.1836 8 6 3.6292 -3.6747 0.0172 9 6 3.3548 -3.0404 1.2129 10 6 2.6659 -1.8357 1.2212 11 7 2.3938 -1.1945 2.4248 12 6 2.4004 -1.8934 3.5772 13 8 2.5467 -3.0998 3.5555 14 6 2.2295 -1.1925 4.8676 15 6 2.0668 0.1972 4.8936 16 6 1.9017 0.8593 6.0968 17 6 1.9059 0.1602 7.2838 18 6 2.0736 -1.2373 7.2780 19 6 2.0778 -1.9579 8.4951 20 1 2.4361 -1.4885 9.3993 21 6 1.6178 -3.2791 8.5275 22 7 0.9540 -3.7658 7.5106 23 14 1.9516 -4.3479 10.0227 24 1 2.7164 -3.5674 11.0283 25 1 0.6626 -4.7888 10.6138 26 1 2.7416 -5.5372 9.6146 27 6 2.2367 -1.9127 6.0567 28 1 -0.3633 -0.0899 -1.0237 29 1 -0.3633 -0.8416 0.5896 30 1 -0.3634 0.9315 0.4340 31 1 3.4393 -3.6258 -2.1121 32 1 4.1691 -4.6101 0.0186 33 1 3.6804 -3.4811 2.1436 34 1 2.1992 -0.2442 2.4349 35 1 2.0661 0.7552 3.9690 36 1 1.7727 1.9315 6.1060 37 1 1.7801 0.6848 8.2195 38 1 0.6348 -4.6815 7.5333 39 1 2.3661 -2.9848 6.0418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188677186.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:30 Heat of formation + Delta-G solvation = -67.770578 kcal Electronic energy + Delta-G solvation = -26554.707846 eV Core-core repulsion = 22534.641312 eV Total energy + Delta-G solvation = -4020.066534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.13859 -40.83304 -39.35707 -38.10686 -37.12445 -34.77764 -33.78784 -31.81754 -30.81419 -29.70588 -29.59426 -29.05979 -25.48454 -24.18022 -23.83227 -21.99197 -21.11670 -20.34257 -19.83613 -18.31402 -17.92497 -16.95731 -16.78541 -16.07948 -15.92710 -15.58181 -15.22847 -15.14245 -14.94346 -14.82061 -14.61296 -14.51559 -14.09710 -13.41046 -13.22073 -12.92718 -12.71699 -12.67524 -12.55391 -12.37166 -12.07790 -11.90036 -11.78403 -11.30721 -11.21289 -10.86905 -10.63126 -10.56274 -10.16124 -10.00787 -9.83293 -9.36398 -9.29963 -8.93868 -8.20937 -7.80425 -7.63621 -6.88176 -4.55062 0.81526 1.04670 1.56266 1.95561 2.67296 3.02292 3.03541 3.04343 3.07680 3.29835 3.65665 3.78097 3.85420 4.08132 4.50759 4.65258 4.77573 4.88961 5.07980 5.18162 5.25011 5.27231 5.41144 5.42899 5.64973 5.77417 5.87661 5.91954 6.07291 6.09013 6.28650 6.36627 6.55086 6.78563 6.83595 6.85903 7.07755 7.12822 7.19772 7.38894 7.52765 7.64793 7.81860 8.00680 8.35396 8.40724 8.66743 8.70605 10.07979 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.003215 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.649720 B = 8706.185003 C = 9798.952503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.408 3.592 3 O -0.441 6.441 4 C -0.241 4.241 5 C 0.148 3.852 6 F -0.135 7.135 7 C -0.184 4.184 8 C -0.052 4.052 9 C -0.153 4.153 10 C 0.230 3.770 11 N -0.672 5.672 12 C 0.569 3.431 13 O -0.512 6.512 14 C -0.135 4.135 15 C -0.213 4.213 16 C -0.096 4.096 17 C -0.200 4.200 18 C 0.100 3.900 19 C -0.461 4.461 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.791 5.791 23 Si 0.912 3.088 24 H -0.260 1.260 25 H -0.273 1.273 26 H -0.271 1.271 27 C -0.077 4.077 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.168 0.832 34 H 0.413 0.587 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.284 0.716 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 0.800 -13.051 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.283 3.717 3 O -0.313 6.313 4 C -0.246 4.246 5 C 0.128 3.872 6 F -0.114 7.114 7 C -0.204 4.204 8 C -0.071 4.071 9 C -0.173 4.173 10 C 0.131 3.869 11 N -0.314 5.314 12 C 0.363 3.637 13 O -0.388 6.388 14 C -0.139 4.139 15 C -0.233 4.233 16 C -0.115 4.115 17 C -0.220 4.220 18 C 0.097 3.903 19 C -0.490 4.490 20 H 0.101 0.899 21 C -0.146 4.146 22 N -0.416 5.416 23 Si 0.737 3.263 24 H -0.184 1.184 25 H -0.199 1.199 26 H -0.196 1.196 27 C -0.097 4.097 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.185 0.815 34 H 0.251 0.749 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.892 0.344 -13.050 13.085 hybrid contribution -0.268 0.024 0.250 0.367 sum 0.624 0.368 -12.800 12.821 Atomic orbital electron populations 1.22298 0.92704 1.05573 1.05075 1.22332 0.92184 0.87049 0.70167 1.90605 1.72422 1.34007 1.34276 1.19997 1.10374 1.01500 0.92732 1.17198 0.97919 0.92812 0.79250 1.91503 1.88774 1.85910 1.45174 1.20958 1.03592 0.95775 1.00109 1.21073 0.96222 0.99104 0.90688 1.21800 0.99424 0.95099 1.00983 1.17495 0.92652 0.92938 0.83778 1.43649 1.69372 1.13502 1.04922 1.19090 0.74269 0.86727 0.83663 1.90633 1.47317 1.14046 1.86846 1.19290 1.09799 0.93717 0.91071 1.20365 1.13757 0.92553 0.96636 1.20466 1.00525 0.97693 0.92772 1.21230 1.09476 0.95033 0.96282 1.17609 0.88547 0.91112 0.92997 1.19614 1.37447 0.96501 0.95487 0.89920 1.25939 0.92621 0.98240 0.97768 1.69756 1.25040 1.16469 1.30357 0.86186 0.79110 0.79825 0.81225 1.18358 1.19871 1.19569 1.21607 0.97909 1.00346 0.89878 0.88095 0.88978 0.88932 0.84380 0.84299 0.81510 0.74939 0.89263 0.88502 0.88231 0.90466 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 10.22 36.01 0.37 -1.64 16 2 C 0.41 5.51 5.19 -30.95 -0.16 5.35 16 3 O -0.44 -7.06 17.86 5.52 0.10 -6.97 16 4 C -0.24 -3.36 5.56 -104.86 -0.58 -3.95 16 5 C 0.15 1.89 7.29 -38.89 -0.28 1.60 16 6 F -0.14 -1.70 16.84 2.25 0.04 -1.66 16 7 C -0.18 -2.02 10.00 -39.55 -0.40 -2.41 16 8 C -0.05 -0.59 10.02 -39.54 -0.40 -0.99 16 9 C -0.15 -2.24 8.75 -39.43 -0.34 -2.59 16 10 C 0.23 3.54 6.50 -83.47 -0.54 3.00 16 11 N -0.67 -11.12 5.14 -10.51 -0.05 -11.18 16 12 C 0.57 11.41 7.60 -12.33 -0.09 11.31 16 13 O -0.51 -11.19 13.27 5.33 0.07 -11.12 16 14 C -0.14 -2.98 5.87 -105.04 -0.62 -3.60 16 15 C -0.21 -4.26 9.54 -38.91 -0.37 -4.63 16 16 C -0.10 -1.95 10.01 -39.72 -0.40 -2.35 16 17 C -0.20 -4.50 9.78 -38.81 -0.38 -4.88 16 18 C 0.10 2.49 5.52 -106.87 -0.59 1.90 16 19 C -0.46 -11.54 9.05 -37.73 -0.34 -11.88 16 20 H 0.08 1.97 7.88 -52.49 -0.41 1.56 16 21 C 0.07 1.75 5.20 -17.34 -0.09 1.66 16 22 N -0.79 -19.95 11.07 55.55 0.61 -19.33 16 23 Si 0.91 18.01 29.58 -169.99 -5.03 12.99 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 27 C -0.08 -1.92 8.19 -38.44 -0.31 -2.24 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 0.90 8.13 -51.93 -0.42 0.47 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.17 2.75 5.49 -52.49 -0.29 2.47 16 34 H 0.41 6.32 5.85 -40.82 -0.24 6.08 16 35 H 0.09 1.52 6.40 -52.49 -0.34 1.18 16 36 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 38 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 39 H 0.13 3.56 6.00 -52.49 -0.31 3.24 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -28.14 345.92 -8.26 -36.40 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -3.68 Total: 11.97 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -5.53 Total: -16.31 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.56 Total: -30.51 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.09 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.14 -8.26 -36.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188677186.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.370 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds