Wall clock time and date at job start Tue Mar 31 2020 15:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21322 * 119.99736 * 2 1 4 4 C 1.46571 * 120.00051 * 179.71939 * 2 1 3 5 5 C 1.40273 * 120.25384 * 86.36565 * 4 2 1 6 6 F 1.35101 * 120.08716 * 0.02562 * 5 4 2 7 7 C 1.38050 * 119.82082 * 179.97438 * 5 4 2 8 8 C 1.38498 * 120.34224 * 0.02562 * 7 5 4 9 9 C 1.38099 * 120.52352 * 359.95468 * 8 7 5 10 10 C 1.38777 * 120.16960 * 359.78752 * 9 8 7 11 11 N 1.39058 * 120.17155 * 180.23462 * 10 9 8 12 12 C 1.34773 * 120.00145 * 338.94474 * 11 10 9 13 13 O 1.21542 * 120.00348 * 354.60401 * 12 11 10 14 14 C 1.47842 * 119.99653 * 174.60812 * 12 11 10 15 15 C 1.39937 * 120.02965 * 359.71755 * 14 12 11 16 16 C 1.38326 * 120.35885 * 179.77012 * 15 14 12 17 17 C 1.37758 * 120.41237 * 0.51323 * 16 15 14 18 18 C 1.40756 * 120.04168 * 359.74378 * 17 16 15 19 19 C 1.41443 * 120.17623 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99407 * 329.76227 * 19 18 17 21 21 C 1.39932 * 120.00106 * 149.76819 * 19 18 17 22 22 N 1.30829 * 119.99900 * 347.00515 * 21 19 18 23 23 Si 1.86801 * 120.00144 * 167.00995 * 21 19 18 24 24 H 1.48503 * 109.46955 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47410 * 119.99621 * 23 21 19 26 26 H 1.48495 * 109.46869 * 239.99646 * 23 21 19 27 27 C 1.39018 * 120.02603 * 180.02562 * 14 12 11 28 28 H 1.09000 * 109.47022 * 95.01675 * 1 2 3 29 29 H 1.08995 * 109.47120 * 215.01318 * 1 2 3 30 30 H 1.08999 * 109.47664 * 335.01754 * 1 2 3 31 31 H 1.07999 * 119.82881 * 180.02562 * 7 5 4 32 32 H 1.07999 * 119.73768 * 179.97438 * 8 7 5 33 33 H 1.08001 * 119.91724 * 180.02562 * 9 8 7 34 34 H 0.97007 * 119.99579 * 158.95217 * 11 10 9 35 35 H 1.08002 * 119.82159 * 0.02960 * 15 14 12 36 36 H 1.07996 * 119.79599 * 180.25943 * 16 15 14 37 37 H 1.08001 * 119.97908 * 179.76533 * 17 16 15 38 38 H 0.97001 * 119.99712 * 180.02562 * 22 21 19 39 39 H 1.07999 * 120.20383 * 359.95101 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2399 -1.2693 0.0062 5 6 2.5267 -1.9257 -1.1998 6 9 2.1285 -1.3894 -2.3741 7 6 3.2180 -3.1205 -1.1836 8 6 3.6292 -3.6747 0.0172 9 6 3.3548 -3.0404 1.2129 10 6 2.6659 -1.8357 1.2212 11 7 2.3938 -1.1945 2.4248 12 6 2.4004 -1.8934 3.5772 13 8 2.5467 -3.0998 3.5555 14 6 2.2295 -1.1925 4.8676 15 6 2.0668 0.1972 4.8936 16 6 1.9017 0.8593 6.0968 17 6 1.9059 0.1602 7.2838 18 6 2.0736 -1.2373 7.2780 19 6 2.0778 -1.9579 8.4951 20 1 2.4361 -1.4885 9.3993 21 6 1.6178 -3.2791 8.5275 22 7 0.9540 -3.7658 7.5106 23 14 1.9516 -4.3479 10.0227 24 1 2.7164 -3.5674 11.0283 25 1 0.6626 -4.7888 10.6138 26 1 2.7416 -5.5372 9.6146 27 6 2.2367 -1.9127 6.0567 28 1 -0.3633 -0.0899 -1.0237 29 1 -0.3633 -0.8416 0.5896 30 1 -0.3634 0.9315 0.4340 31 1 3.4393 -3.6258 -2.1121 32 1 4.1691 -4.6101 0.0186 33 1 3.6804 -3.4811 2.1436 34 1 2.1992 -0.2442 2.4349 35 1 2.0661 0.7552 3.9690 36 1 1.7727 1.9315 6.1060 37 1 1.7801 0.6848 8.2195 38 1 0.6348 -4.6815 7.5333 39 1 2.3661 -2.9848 6.0418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188677186.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:29 Heat of formation + Delta-G solvation = -81.958860 kcal Electronic energy + Delta-G solvation = -26555.323096 eV Core-core repulsion = 22534.641312 eV Total energy + Delta-G solvation = -4020.681785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.12976 -42.12917 -40.62864 -39.41673 -38.66561 -36.15923 -35.52203 -32.88410 -32.37425 -31.40173 -30.62557 -30.25956 -27.26824 -25.48743 -24.96367 -23.37294 -22.82885 -21.48918 -21.25201 -19.74884 -19.27992 -18.24251 -18.00323 -17.40390 -17.07829 -16.86646 -16.71339 -16.47283 -16.23143 -16.15931 -15.78731 -15.67082 -15.49442 -15.11641 -14.57721 -14.34919 -14.29625 -13.77818 -13.55057 -13.49131 -13.28558 -13.12131 -13.00926 -12.84706 -12.82566 -12.56354 -12.22025 -11.92081 -11.77739 -11.54827 -11.12692 -11.07554 -10.84513 -9.98414 -9.65216 -9.41910 -9.27197 -8.65632 -6.42523 -0.27755 -0.06636 0.37475 0.51949 0.94860 1.38945 1.44763 1.53925 1.70557 1.86960 2.20344 2.43161 2.75230 2.78356 3.05005 3.57933 3.61048 3.76283 3.84182 3.96268 4.19754 4.23224 4.33259 4.43754 4.46837 4.48940 4.67083 4.81603 4.87071 4.96586 5.00950 5.05542 5.10439 5.20687 5.27414 5.30978 5.44412 5.74436 5.75703 5.83169 5.97673 6.09363 6.14561 6.25189 6.53959 6.85299 6.87722 6.90531 8.32594 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.003215 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.649720 B = 8706.185003 C = 9798.952503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.407 3.593 3 O -0.472 6.472 4 C -0.244 4.244 5 C 0.141 3.859 6 F -0.132 7.132 7 C -0.164 4.164 8 C -0.041 4.041 9 C -0.170 4.170 10 C 0.203 3.797 11 N -0.659 5.659 12 C 0.570 3.430 13 O -0.539 6.539 14 C -0.143 4.143 15 C -0.197 4.197 16 C -0.095 4.095 17 C -0.205 4.205 18 C 0.070 3.930 19 C -0.498 4.498 20 H 0.084 0.916 21 C 0.032 3.968 22 N -0.831 5.831 23 Si 0.982 3.018 24 H -0.254 1.254 25 H -0.266 1.266 26 H -0.269 1.269 27 C -0.110 4.110 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.175 0.825 32 H 0.172 0.828 33 H 0.144 0.856 34 H 0.418 0.582 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.112 0.888 38 H 0.287 0.713 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 1.459 -15.024 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.284 3.716 3 O -0.346 6.346 4 C -0.249 4.249 5 C 0.121 3.879 6 F -0.111 7.111 7 C -0.184 4.184 8 C -0.060 4.060 9 C -0.191 4.191 10 C 0.105 3.895 11 N -0.302 5.302 12 C 0.363 3.637 13 O -0.417 6.417 14 C -0.146 4.146 15 C -0.216 4.216 16 C -0.113 4.113 17 C -0.225 4.225 18 C 0.068 3.932 19 C -0.527 4.527 20 H 0.102 0.898 21 C -0.183 4.183 22 N -0.457 5.457 23 Si 0.803 3.197 24 H -0.177 1.177 25 H -0.191 1.191 26 H -0.194 1.194 27 C -0.131 4.131 28 H 0.141 0.859 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.193 0.807 32 H 0.189 0.811 33 H 0.161 0.839 34 H 0.257 0.743 35 H 0.143 0.857 36 H 0.156 0.844 37 H 0.130 0.870 38 H 0.097 0.903 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.831 1.028 -15.064 15.122 hybrid contribution -0.216 -0.075 0.604 0.646 sum 0.614 0.953 -14.460 14.504 Atomic orbital electron populations 1.22348 0.90019 1.06301 1.06624 1.22813 0.93636 0.86318 0.68843 1.90596 1.73262 1.34767 1.36023 1.20120 1.10313 1.01795 0.92672 1.17381 0.98196 0.93396 0.78897 1.91514 1.88770 1.85988 1.44813 1.21363 1.01129 0.94605 1.01267 1.21401 0.95314 0.99745 0.89511 1.21755 1.00326 0.95448 1.01527 1.17600 0.94546 0.93802 0.83533 1.43286 1.68885 1.13449 1.04535 1.18803 0.74373 0.86380 0.84126 1.90628 1.48633 1.15103 1.87316 1.19554 1.08932 0.94834 0.91260 1.20807 1.10763 0.91745 0.98308 1.20910 0.98927 0.99713 0.91753 1.21514 1.08763 0.94235 0.97984 1.17936 0.89476 0.92575 0.93202 1.19863 1.39271 0.97815 0.95775 0.89825 1.26767 0.91836 0.99126 1.00547 1.69847 1.26500 1.16896 1.32446 0.85144 0.79099 0.77780 0.77643 1.17697 1.19058 1.19444 1.21395 1.01044 0.99275 0.91343 0.85862 0.88640 0.87872 0.80719 0.81051 0.83880 0.74333 0.85674 0.84386 0.86985 0.90260 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.52 10.22 71.24 0.73 -2.79 16 2 C 0.41 10.35 5.19 27.86 0.14 10.49 16 3 O -0.47 -14.53 17.86 -3.16 -0.06 -14.59 16 4 C -0.24 -6.46 5.56 -20.02 -0.11 -6.57 16 5 C 0.14 3.23 7.29 22.72 0.17 3.40 16 6 F -0.13 -2.95 16.84 44.97 0.76 -2.19 16 7 C -0.16 -3.01 10.00 22.29 0.22 -2.78 16 8 C -0.04 -0.84 10.02 22.30 0.22 -0.62 16 9 C -0.17 -4.94 8.75 22.37 0.20 -4.75 16 10 C 0.20 6.13 6.50 38.72 0.25 6.38 16 11 N -0.66 -21.72 5.14 -305.44 -1.57 -23.29 16 12 C 0.57 23.51 7.60 86.79 0.66 24.17 16 13 O -0.54 -24.77 13.27 -3.85 -0.05 -24.82 16 14 C -0.14 -6.40 5.87 -20.14 -0.12 -6.52 16 15 C -0.20 -7.57 9.54 22.70 0.22 -7.35 16 16 C -0.10 -3.66 10.01 22.18 0.22 -3.43 16 17 C -0.21 -9.20 9.78 22.77 0.22 -8.98 16 18 C 0.07 3.65 5.52 -21.32 -0.12 3.53 16 19 C -0.50 -26.03 9.05 23.47 0.21 -25.82 16 20 H 0.08 4.16 7.88 -2.91 -0.02 4.13 16 21 C 0.03 1.58 5.20 85.25 0.44 2.03 16 22 N -0.83 -44.24 11.07 21.82 0.24 -44.00 16 23 Si 0.98 38.17 29.58 68.60 2.03 40.20 16 24 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 25 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 26 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 27 C -0.11 -5.77 8.19 23.01 0.19 -5.58 16 28 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.09 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.14 4.91 5.49 -2.91 -0.02 4.90 16 34 H 0.42 12.38 5.85 -92.70 -0.54 11.84 16 35 H 0.13 3.89 6.40 -2.91 -0.02 3.87 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 38 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 39 H 0.10 5.94 6.00 -2.91 -0.02 5.92 16 Total: -1.00 -65.21 345.92 5.68 -59.52 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.58 Total: 34.35 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 3.75 Total: -25.19 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -1.33 Total: -67.28 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.11 Total: -39.41 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.76 Total: -2.19 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -65.21 5.68 -59.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188677186.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.434 kcal (2) G-P(sol) polarization free energy of solvation -65.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds