Wall clock time and date at job start Tue Mar 31 2020 15:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21298 * 120.00099 * 2 1 4 4 C 1.46841 * 120.00145 * 179.97438 * 2 1 3 5 5 C 1.40051 * 120.08947 * 186.42739 * 4 2 1 6 6 C 1.37570 * 119.93935 * 180.02562 * 5 4 2 7 7 C 1.39177 * 120.13052 * 0.02562 * 6 5 4 8 8 N 1.39325 * 119.91298 * 180.02562 * 7 6 5 9 9 C 1.34781 * 119.99424 * 30.40409 * 8 7 6 10 10 O 1.21546 * 120.00392 * 355.46374 * 9 8 7 11 11 C 1.47849 * 119.99636 * 175.47094 * 9 8 7 12 12 C 1.39938 * 120.02688 * 359.71934 * 11 9 8 13 13 C 1.38330 * 120.35604 * 179.69349 * 12 11 9 14 14 C 1.37756 * 120.41274 * 0.61265 * 13 12 11 15 15 C 1.40757 * 120.04109 * 359.66815 * 14 13 12 16 16 C 1.41439 * 120.17588 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99990 * 146.98042 * 16 15 14 18 18 C 1.39941 * 119.99920 * 326.98563 * 16 15 14 19 19 N 1.30829 * 119.99962 * 169.34190 * 18 16 15 20 20 Si 1.86797 * 120.00015 * 349.34161 * 18 16 15 21 21 H 1.48505 * 109.47170 * 88.90567 * 20 18 16 22 22 H 1.48498 * 109.47212 * 208.90066 * 20 18 16 23 23 H 1.48503 * 109.47191 * 328.90608 * 20 18 16 24 24 C 1.39017 * 120.02936 * 180.02562 * 11 9 8 25 25 C 1.39413 * 120.18176 * 359.97438 * 7 6 5 26 26 F 1.35092 * 119.97366 * 179.97438 * 25 7 6 27 27 C 1.37753 * 120.05261 * 0.27366 * 25 7 6 28 28 H 1.09002 * 109.46647 * 184.80466 * 1 2 3 29 29 H 1.09000 * 109.46921 * 304.80822 * 1 2 3 30 30 H 1.08999 * 109.46808 * 64.80518 * 1 2 3 31 31 H 1.08001 * 120.03130 * 0.02562 * 5 4 2 32 32 H 1.08000 * 119.93443 * 180.02562 * 6 5 4 33 33 H 0.96997 * 120.00315 * 210.40478 * 8 7 6 34 34 H 1.08006 * 119.82401 * 0.02562 * 12 11 9 35 35 H 1.07994 * 119.79534 * 180.30440 * 13 12 11 36 36 H 1.07998 * 119.98063 * 179.69357 * 14 13 12 37 37 H 0.97000 * 120.00291 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.19836 * 359.97438 * 24 11 9 39 39 H 1.07999 * 120.05822 * 179.69926 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2413 -1.2717 0.0006 5 6 3.6352 -1.2776 0.1362 6 6 4.3200 -2.4707 0.1358 7 6 3.6304 -3.6720 0.0003 8 7 4.3285 -4.8778 0.0011 9 6 5.4741 -4.9927 0.7018 10 8 5.9417 -4.0226 1.2655 11 6 6.1620 -6.2987 0.7847 12 6 5.6211 -7.4172 0.1407 13 6 6.2624 -8.6410 0.2085 14 6 7.4337 -8.7760 0.9208 15 6 7.9898 -7.6636 1.5800 16 6 9.1926 -7.7988 2.3117 17 1 9.8899 -6.9756 2.3614 18 6 9.4793 -8.9994 2.9711 19 7 10.6715 -9.2033 3.4697 20 14 8.1596 -10.3107 3.1393 21 1 8.2025 -11.2105 1.9586 22 1 8.4017 -11.1012 4.3729 23 1 6.8257 -9.6631 3.2199 24 6 7.3433 -6.4182 1.5077 25 6 2.2429 -3.6722 -0.1350 26 9 1.5778 -4.8407 -0.2668 27 6 1.5501 -2.4816 -0.1408 28 1 -0.3633 -1.0241 0.0861 29 1 -0.3633 0.5866 0.8438 30 1 -0.3633 0.4375 -0.9299 31 1 4.1720 -0.3463 0.2411 32 1 5.3949 -2.4752 0.2409 33 1 3.9901 -5.6344 -0.5027 34 1 4.7008 -7.3233 -0.4167 35 1 5.8395 -9.4971 -0.2960 36 1 7.9259 -9.7359 0.9732 37 1 10.8701 -10.0354 3.9271 38 1 7.7620 -5.5586 2.0101 39 1 0.4757 -2.4814 -0.2505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188677923.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:33 Heat of formation + Delta-G solvation = -66.281574 kcal Electronic energy + Delta-G solvation = -25803.648267 eV Core-core repulsion = 21783.646300 eV Total energy + Delta-G solvation = -4020.001966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.13888 -40.72648 -39.81217 -38.22207 -37.36801 -34.96558 -33.78375 -32.02835 -30.97756 -30.41877 -30.24190 -28.89857 -25.49990 -24.69087 -23.13633 -22.75000 -20.90053 -20.62378 -20.04867 -18.64733 -17.81331 -17.28062 -16.72448 -16.42711 -16.05409 -15.94661 -15.59048 -15.20547 -14.90902 -14.83679 -14.82124 -14.47483 -14.18036 -13.80944 -13.40071 -12.98720 -12.89314 -12.77765 -12.70554 -12.51591 -12.35847 -12.15388 -11.88867 -11.78476 -11.22302 -10.89834 -10.71591 -10.60051 -10.16719 -10.05421 -9.87210 -9.64339 -9.29596 -9.14088 -8.39419 -8.03930 -7.90089 -7.05807 -4.67907 0.23672 0.92115 1.59200 2.07700 2.36684 2.91108 2.97360 3.10006 3.13770 3.24131 3.47972 3.67543 3.84097 3.93028 4.30452 4.35914 4.65702 4.71316 4.86047 5.01454 5.04752 5.15115 5.17302 5.33778 5.42700 5.60254 5.65741 5.76126 5.83356 5.91561 6.08002 6.18988 6.21274 6.47625 6.49055 6.66650 6.82454 7.01690 7.18076 7.20989 7.30304 7.35277 7.60555 7.77457 8.17234 8.19759 8.37637 8.60045 9.96340 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026845 B = 0.002510 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.772063 B =11150.512793 C =11823.209682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.401 3.599 3 O -0.460 6.460 4 C -0.179 4.179 5 C -0.044 4.044 6 C -0.121 4.121 7 C 0.168 3.832 8 N -0.670 5.670 9 C 0.568 3.432 10 O -0.518 6.518 11 C -0.113 4.113 12 C -0.213 4.213 13 C -0.081 4.081 14 C -0.218 4.218 15 C 0.081 3.919 16 C -0.440 4.440 17 H 0.095 0.905 18 C 0.080 3.920 19 N -0.807 5.807 20 Si 0.915 3.085 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.245 1.245 24 C -0.127 4.127 25 C 0.048 3.952 26 F -0.134 7.134 27 C -0.087 4.087 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.165 0.835 33 H 0.418 0.582 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.288 0.712 38 H 0.119 0.881 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 8.495 -7.427 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.279 3.721 3 O -0.336 6.336 4 C -0.181 4.181 5 C -0.063 4.063 6 C -0.142 4.142 7 C 0.069 3.931 8 N -0.314 5.314 9 C 0.361 3.639 10 O -0.394 6.394 11 C -0.116 4.116 12 C -0.233 4.233 13 C -0.100 4.100 14 C -0.238 4.238 15 C 0.078 3.922 16 C -0.468 4.468 17 H 0.113 0.887 18 C -0.139 4.139 19 N -0.431 5.431 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.217 1.217 23 H -0.168 1.168 24 C -0.147 4.147 25 C 0.026 3.974 26 F -0.113 7.113 27 C -0.106 4.106 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.161 0.839 32 H 0.183 0.817 33 H 0.256 0.744 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.137 0.863 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.309 9.480 -6.840 20.887 hybrid contribution -0.824 -1.561 -0.156 1.772 sum -18.133 7.919 -6.996 20.987 Atomic orbital electron populations 1.22246 0.93767 1.04848 1.05032 1.22290 0.91591 0.87353 0.70823 1.90562 1.72082 1.34162 1.36767 1.20265 0.94644 0.94134 1.09023 1.21413 0.92674 0.98720 0.93492 1.21516 1.02808 0.89194 1.00655 1.18169 0.89089 0.87765 0.98072 1.43514 1.25041 1.12701 1.50167 1.19038 0.78752 0.89840 0.76270 1.90679 1.64400 1.39348 1.44996 1.19237 0.97948 0.90624 1.03838 1.20405 1.01607 0.93234 1.08060 1.20525 0.95180 0.96018 0.98236 1.21334 0.99437 0.99437 1.03556 1.17729 0.92368 0.90860 0.91290 1.19533 1.01760 0.99975 1.25551 0.88681 1.26165 0.96048 0.98562 0.93109 1.69629 1.20344 1.25894 1.27187 0.86295 0.82657 0.79791 0.77085 1.19423 1.21739 1.16828 1.21324 0.93959 0.98606 1.00774 1.17268 0.88126 0.82189 1.09861 1.91503 1.80218 1.45713 1.93872 1.21212 1.00665 0.89828 0.98886 0.89817 0.88731 0.88602 0.83940 0.81744 0.74384 0.88484 0.87931 0.87406 0.90181 0.86312 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.11 10.16 36.01 0.37 -0.75 16 2 C 0.40 3.83 7.20 -30.83 -0.22 3.61 16 3 O -0.46 -5.93 17.10 5.54 0.09 -5.84 16 4 C -0.18 -1.83 5.87 -105.06 -0.62 -2.44 16 5 C -0.04 -0.51 9.58 -39.15 -0.38 -0.89 16 6 C -0.12 -1.63 8.70 -39.48 -0.34 -1.97 16 7 C 0.17 2.25 6.39 -83.67 -0.53 1.71 16 8 N -0.67 -9.62 5.18 -10.65 -0.06 -9.68 16 9 C 0.57 10.20 7.63 -12.33 -0.09 10.10 16 10 O -0.52 -10.31 13.45 5.33 0.07 -10.24 16 11 C -0.11 -2.24 5.87 -105.04 -0.62 -2.85 16 12 C -0.21 -3.83 9.55 -38.91 -0.37 -4.20 16 13 C -0.08 -1.56 10.01 -39.72 -0.40 -1.95 16 14 C -0.22 -4.81 7.06 -38.81 -0.27 -5.09 16 15 C 0.08 1.93 5.10 -106.87 -0.55 1.38 16 16 C -0.44 -11.36 9.60 -37.73 -0.36 -11.73 16 17 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 18 C 0.08 2.01 5.48 -17.34 -0.09 1.92 16 19 N -0.81 -20.75 13.93 55.55 0.77 -19.98 16 20 Si 0.91 19.75 24.42 -169.99 -4.15 15.60 16 21 H -0.27 -5.52 6.53 56.52 0.37 -5.16 16 22 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.24 -5.39 6.82 56.52 0.39 -5.01 16 24 C -0.13 -2.84 9.34 -38.44 -0.36 -3.20 16 25 C 0.05 0.54 7.29 -39.32 -0.29 0.26 16 26 F -0.13 -1.55 16.87 2.25 0.04 -1.51 16 27 C -0.09 -0.79 9.36 -39.08 -0.37 -1.16 16 28 H 0.08 0.31 5.70 -51.93 -0.30 0.02 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.14 1.57 7.65 -52.49 -0.40 1.17 16 32 H 0.17 2.46 5.84 -52.49 -0.31 2.15 16 33 H 0.42 5.14 6.57 -40.82 -0.27 4.87 16 34 H 0.10 1.39 6.39 -52.48 -0.34 1.05 16 35 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.11 2.36 4.43 -52.49 -0.23 2.13 16 37 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 38 H 0.12 2.70 7.64 -52.49 -0.40 2.30 16 39 H 0.15 0.87 6.04 -52.49 -0.32 0.55 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -28.57 336.55 -7.08 -35.65 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -3.43 Total: 8.18 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -5.49 Total: -17.26 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.72 Total: -29.66 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.17 Total: -16.08 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.15 Total: 15.60 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.57 -7.08 -35.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188677923.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.632 kcal (2) G-P(sol) polarization free energy of solvation -28.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds