Wall clock time and date at job start Tue Mar 31 2020 15:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21298 * 120.00099 * 2 1 4 4 C 1.46841 * 120.00145 * 179.97438 * 2 1 3 5 5 C 1.40051 * 120.08947 * 186.42739 * 4 2 1 6 6 C 1.37570 * 119.93935 * 180.02562 * 5 4 2 7 7 C 1.39177 * 120.13052 * 0.02562 * 6 5 4 8 8 N 1.39325 * 119.91298 * 180.02562 * 7 6 5 9 9 C 1.34781 * 119.99424 * 30.40409 * 8 7 6 10 10 O 1.21546 * 120.00392 * 355.46374 * 9 8 7 11 11 C 1.47849 * 119.99636 * 175.47094 * 9 8 7 12 12 C 1.39938 * 120.02688 * 359.71934 * 11 9 8 13 13 C 1.38330 * 120.35604 * 179.69349 * 12 11 9 14 14 C 1.37756 * 120.41274 * 0.61265 * 13 12 11 15 15 C 1.40757 * 120.04109 * 359.66815 * 14 13 12 16 16 C 1.41439 * 120.17588 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99990 * 146.98042 * 16 15 14 18 18 C 1.39941 * 119.99920 * 326.98563 * 16 15 14 19 19 N 1.30829 * 119.99962 * 169.34190 * 18 16 15 20 20 Si 1.86797 * 120.00015 * 349.34161 * 18 16 15 21 21 H 1.48505 * 109.47170 * 88.90567 * 20 18 16 22 22 H 1.48498 * 109.47212 * 208.90066 * 20 18 16 23 23 H 1.48503 * 109.47191 * 328.90608 * 20 18 16 24 24 C 1.39017 * 120.02936 * 180.02562 * 11 9 8 25 25 C 1.39413 * 120.18176 * 359.97438 * 7 6 5 26 26 F 1.35092 * 119.97366 * 179.97438 * 25 7 6 27 27 C 1.37753 * 120.05261 * 0.27366 * 25 7 6 28 28 H 1.09002 * 109.46647 * 184.80466 * 1 2 3 29 29 H 1.09000 * 109.46921 * 304.80822 * 1 2 3 30 30 H 1.08999 * 109.46808 * 64.80518 * 1 2 3 31 31 H 1.08001 * 120.03130 * 0.02562 * 5 4 2 32 32 H 1.08000 * 119.93443 * 180.02562 * 6 5 4 33 33 H 0.96997 * 120.00315 * 210.40478 * 8 7 6 34 34 H 1.08006 * 119.82401 * 0.02562 * 12 11 9 35 35 H 1.07994 * 119.79534 * 180.30440 * 13 12 11 36 36 H 1.07998 * 119.98063 * 179.69357 * 14 13 12 37 37 H 0.97000 * 120.00291 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.19836 * 359.97438 * 24 11 9 39 39 H 1.07999 * 120.05822 * 179.69926 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2413 -1.2717 0.0006 5 6 3.6352 -1.2776 0.1362 6 6 4.3200 -2.4707 0.1358 7 6 3.6304 -3.6720 0.0003 8 7 4.3285 -4.8778 0.0011 9 6 5.4741 -4.9927 0.7018 10 8 5.9417 -4.0226 1.2655 11 6 6.1620 -6.2987 0.7847 12 6 5.6211 -7.4172 0.1407 13 6 6.2624 -8.6410 0.2085 14 6 7.4337 -8.7760 0.9208 15 6 7.9898 -7.6636 1.5800 16 6 9.1926 -7.7988 2.3117 17 1 9.8899 -6.9756 2.3614 18 6 9.4793 -8.9994 2.9711 19 7 10.6715 -9.2033 3.4697 20 14 8.1596 -10.3107 3.1393 21 1 8.2025 -11.2105 1.9586 22 1 8.4017 -11.1012 4.3729 23 1 6.8257 -9.6631 3.2199 24 6 7.3433 -6.4182 1.5077 25 6 2.2429 -3.6722 -0.1350 26 9 1.5778 -4.8407 -0.2668 27 6 1.5501 -2.4816 -0.1408 28 1 -0.3633 -1.0241 0.0861 29 1 -0.3633 0.5866 0.8438 30 1 -0.3633 0.4375 -0.9299 31 1 4.1720 -0.3463 0.2411 32 1 5.3949 -2.4752 0.2409 33 1 3.9901 -5.6344 -0.5027 34 1 4.7008 -7.3233 -0.4167 35 1 5.8395 -9.4971 -0.2960 36 1 7.9259 -9.7359 0.9732 37 1 10.8701 -10.0354 3.9271 38 1 7.7620 -5.5586 2.0101 39 1 0.4757 -2.4814 -0.2505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188677923.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:32 Heat of formation + Delta-G solvation = -83.001525 kcal Electronic energy + Delta-G solvation = -25804.373298 eV Core-core repulsion = 21783.646300 eV Total energy + Delta-G solvation = -4020.726998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.02789 -41.92718 -40.80400 -39.54454 -38.70787 -36.20333 -35.55182 -33.10439 -32.37360 -31.87590 -31.31079 -29.76180 -27.21487 -25.91814 -24.31714 -23.81473 -22.55575 -21.89325 -21.07906 -19.99302 -19.07779 -18.28608 -18.14865 -17.67809 -17.26652 -16.87550 -16.68641 -16.53086 -16.15175 -15.93946 -15.87031 -15.65920 -15.52367 -15.15692 -14.64100 -14.54082 -14.41174 -13.92138 -13.69341 -13.57644 -13.38394 -13.15008 -12.97825 -12.90853 -12.69024 -12.64103 -12.35827 -11.78598 -11.75415 -11.62999 -11.27687 -11.00530 -10.74383 -10.06790 -9.76221 -9.65784 -9.33753 -8.89411 -6.60370 -0.69897 0.02150 0.06486 0.68839 1.19026 1.24437 1.39591 1.46606 1.68819 1.81275 2.09465 2.49681 2.62275 2.86188 3.10730 3.35498 3.46844 3.60181 3.86801 4.00321 4.15792 4.19935 4.28752 4.34888 4.50275 4.55301 4.63685 4.70305 4.78374 4.84610 4.89332 4.91774 5.09499 5.12168 5.13313 5.30839 5.36110 5.53207 5.63023 5.66885 5.80032 5.98282 6.19063 6.27464 6.48534 6.58728 6.71065 6.85290 8.19515 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026845 B = 0.002510 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.772063 B =11150.512793 C =11823.209682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.403 3.597 3 O -0.500 6.500 4 C -0.175 4.175 5 C -0.053 4.053 6 C -0.135 4.135 7 C 0.143 3.857 8 N -0.653 5.653 9 C 0.569 3.431 10 O -0.547 6.547 11 C -0.116 4.116 12 C -0.177 4.177 13 C -0.082 4.082 14 C -0.220 4.220 15 C 0.064 3.936 16 C -0.486 4.486 17 H 0.051 0.949 18 C 0.039 3.961 19 N -0.857 5.857 20 Si 0.971 3.029 21 H -0.244 1.244 22 H -0.281 1.281 23 H -0.250 1.250 24 C -0.155 4.155 25 C 0.054 3.946 26 F -0.130 7.130 27 C -0.064 4.064 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.429 0.571 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.111 0.889 37 H 0.294 0.706 38 H 0.095 0.905 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.127 7.416 -9.634 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.284 3.716 3 O -0.379 6.379 4 C -0.177 4.177 5 C -0.072 4.072 6 C -0.155 4.155 7 C 0.046 3.954 8 N -0.299 5.299 9 C 0.361 3.639 10 O -0.425 6.425 11 C -0.119 4.119 12 C -0.196 4.196 13 C -0.099 4.099 14 C -0.239 4.239 15 C 0.061 3.939 16 C -0.516 4.516 17 H 0.069 0.931 18 C -0.174 4.174 19 N -0.483 5.483 20 Si 0.793 3.207 21 H -0.169 1.169 22 H -0.208 1.208 23 H -0.173 1.173 24 C -0.175 4.175 25 C 0.032 3.968 26 F -0.108 7.108 27 C -0.083 4.083 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.270 0.730 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -23.233 8.402 -9.084 26.323 hybrid contribution 0.743 -0.978 0.336 1.273 sum -22.491 7.424 -8.748 25.248 Atomic orbital electron populations 1.22301 0.89766 1.06897 1.06253 1.22891 0.93546 0.86080 0.69081 1.90566 1.73291 1.35319 1.38710 1.20532 0.93931 0.95501 1.07723 1.21453 0.93907 0.97999 0.93847 1.21305 1.01895 0.90297 1.01996 1.18277 0.90115 0.86946 1.00079 1.43152 1.23766 1.13633 1.49324 1.18751 0.79703 0.88762 0.76695 1.90689 1.65457 1.39980 1.46417 1.19473 0.96925 0.92511 1.03018 1.21046 1.02064 0.91699 1.04837 1.21057 0.93797 0.97996 0.97089 1.21546 1.00442 0.98644 1.03286 1.17797 0.92067 0.92277 0.91729 1.19457 1.03049 0.99814 1.29235 0.93115 1.26919 0.97925 1.00205 0.92331 1.69681 1.22031 1.27152 1.29485 0.85460 0.79449 0.77542 0.78213 1.16916 1.20834 1.17339 1.21244 0.95751 0.97784 1.02729 1.17275 0.87113 0.83049 1.09349 1.91521 1.79894 1.45608 1.93790 1.21594 1.02564 0.88058 0.96075 0.87279 0.87799 0.86937 0.84286 0.84235 0.73006 0.83314 0.83160 0.87132 0.89532 0.88661 0.78973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 10.16 71.24 0.72 -0.51 16 2 C 0.40 6.58 7.20 27.94 0.20 6.78 16 3 O -0.50 -12.34 17.10 -3.08 -0.05 -12.39 16 4 C -0.17 -3.11 5.87 -20.15 -0.12 -3.23 16 5 C -0.05 -1.22 9.58 22.55 0.22 -1.01 16 6 C -0.13 -3.63 8.70 22.34 0.19 -3.43 16 7 C 0.14 3.57 6.39 38.46 0.25 3.81 16 8 N -0.65 -17.27 5.18 -305.88 -1.59 -18.85 16 9 C 0.57 20.15 7.63 86.79 0.66 20.81 16 10 O -0.55 -22.69 13.45 -3.86 -0.05 -22.74 16 11 C -0.12 -4.47 5.87 -20.13 -0.12 -4.59 16 12 C -0.18 -5.58 9.55 22.70 0.22 -5.37 16 13 C -0.08 -2.75 10.01 22.18 0.22 -2.52 16 14 C -0.22 -9.37 7.06 22.77 0.16 -9.21 16 15 C 0.06 3.17 5.10 -21.32 -0.11 3.06 16 16 C -0.49 -27.28 9.60 23.47 0.23 -27.06 16 17 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 18 C 0.04 2.09 5.48 85.25 0.47 2.56 16 19 N -0.86 -47.09 13.93 21.83 0.30 -46.79 16 20 Si 0.97 40.85 24.42 68.60 1.68 42.53 16 21 H -0.24 -9.26 6.53 99.48 0.65 -8.62 16 22 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.25 -10.55 6.82 99.48 0.68 -9.87 16 24 C -0.15 -7.29 9.34 23.01 0.21 -7.08 16 25 C 0.05 1.03 7.29 22.44 0.16 1.19 16 26 F -0.13 -2.34 16.87 44.97 0.76 -1.59 16 27 C -0.06 -0.88 9.36 22.60 0.21 -0.67 16 28 H 0.11 0.12 5.70 -2.39 -0.01 0.10 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.14 3.21 7.65 -2.91 -0.02 3.18 16 32 H 0.14 4.47 5.84 -2.91 -0.02 4.45 16 33 H 0.43 8.74 6.57 -92.71 -0.61 8.13 16 34 H 0.15 3.21 6.39 -2.91 -0.02 3.19 16 35 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.11 4.63 4.43 -2.91 -0.01 4.62 16 37 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 38 H 0.10 4.80 7.64 -2.91 -0.02 4.78 16 39 H 0.19 0.93 6.04 -2.91 -0.02 0.91 16 Total: -1.00 -69.77 336.55 5.27 -64.49 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.45 Total: 21.80 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 3.78 Total: -26.46 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -1.28 Total: -65.64 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.10 Total: -35.13 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.76 Total: -1.59 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 1.68 Total: 42.53 kcal Total: -69.77 5.27 -64.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188677923.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.510 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds