Wall clock time and date at job start Tue Mar 31 2020 15:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47427 * 2 1 4 4 C 1.34229 * 117.00262 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99902 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00011 * 179.97438 * 4 3 2 7 7 F 1.39906 * 109.46748 * 85.00435 * 6 4 3 8 8 F 1.39902 * 109.47353 * 325.00333 * 6 4 3 9 9 C 1.52998 * 109.47250 * 205.00254 * 6 4 3 10 10 N 1.46498 * 109.47424 * 180.02562 * 9 6 4 11 11 C 1.34773 * 120.00154 * 180.02562 * 10 9 6 12 12 O 1.21548 * 120.00201 * 359.97438 * 11 10 9 13 13 C 1.47887 * 120.00116 * 180.02562 * 11 10 9 14 14 C 1.39923 * 120.02273 * 359.71517 * 13 11 10 15 15 C 1.38326 * 120.35871 * 179.74522 * 14 13 11 16 16 C 1.37755 * 120.40853 * 0.56468 * 15 14 13 17 17 C 1.40752 * 120.04221 * 359.68880 * 16 15 14 18 18 C 1.41438 * 120.18004 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99683 * 24.44694 * 18 17 16 20 20 C 1.39935 * 120.00027 * 204.44460 * 18 17 16 21 21 N 1.30820 * 120.00060 * 17.87968 * 20 18 17 22 22 Si 1.86798 * 119.99804 * 197.88502 * 20 18 17 23 23 H 1.48505 * 109.47353 * 89.99731 * 22 20 18 24 24 H 1.48498 * 109.46976 * 209.99993 * 22 20 18 25 25 H 1.48499 * 109.47271 * 329.99830 * 22 20 18 26 26 C 1.38990 * 120.02650 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.47313 * 300.00267 * 1 2 3 28 28 H 1.09003 * 109.46872 * 59.99888 * 1 2 3 29 29 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47085 * 240.00235 * 2 1 3 31 31 H 1.09003 * 109.46872 * 120.00112 * 2 1 3 32 32 H 1.09004 * 109.46979 * 300.00543 * 9 6 4 33 33 H 1.09006 * 109.46730 * 60.00025 * 9 6 4 34 34 H 0.97001 * 119.99564 * 0.02562 * 10 9 6 35 35 H 1.08005 * 119.82165 * 0.02562 * 14 13 11 36 36 H 1.08003 * 119.79796 * 180.27758 * 15 14 13 37 37 H 1.08003 * 119.98254 * 179.72326 * 16 15 14 38 38 H 0.97000 * 119.99984 * 180.02562 * 21 20 18 39 39 H 1.08002 * 120.20219 * 359.94582 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 9 3.9923 3.4129 1.3138 8 9 3.1010 3.7809 -0.7574 9 6 5.3241 2.9086 -0.6090 10 7 5.8843 4.2622 -0.6090 11 6 7.1194 4.4804 -1.1022 12 8 7.7688 3.5540 -1.5466 13 6 7.6852 5.8467 -1.1017 14 6 6.9363 6.9144 -0.5947 15 6 7.4607 8.1944 -0.5860 16 6 8.7213 8.4348 -1.0867 17 6 9.4874 7.3743 -1.6057 18 6 10.7823 7.6178 -2.1200 19 1 11.3449 8.4757 -1.7824 20 6 11.3344 6.7472 -3.0663 21 7 10.5607 5.9296 -3.7328 22 14 13.1763 6.7524 -3.3775 23 1 13.8351 5.7822 -2.4664 24 1 13.4412 6.3666 -4.7868 25 1 13.7168 8.1126 -3.1267 26 6 8.9591 6.0722 -1.6097 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.9628 2.2513 -0.0189 33 1 5.2684 2.5380 -1.6326 34 1 5.3663 5.0015 -0.2540 35 1 5.9451 6.7374 -0.2039 36 1 6.8764 9.0111 -0.1884 37 1 9.1222 9.4377 -1.0806 38 1 10.9435 5.3258 -4.3884 39 1 9.5395 5.2517 -2.0051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188682520.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:13 Heat of formation + Delta-G solvation = -199.483277 kcal Electronic energy + Delta-G solvation = -27075.031770 eV Core-core repulsion = 22618.484519 eV Total energy + Delta-G solvation = -4456.547250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.65874 -47.64425 -41.03786 -39.32265 -37.48331 -37.06729 -34.70829 -33.74625 -32.33972 -30.95118 -29.63031 -29.41870 -25.90943 -25.19185 -23.45428 -22.28082 -21.65261 -20.95774 -19.92897 -19.02841 -18.42338 -18.18048 -17.55385 -16.95500 -16.75750 -15.78072 -15.55348 -15.06405 -15.00655 -14.94528 -14.61175 -14.55946 -14.25676 -13.92159 -13.83336 -13.42635 -13.30366 -13.23350 -12.83650 -12.69395 -12.53947 -12.52105 -12.33466 -12.12354 -11.67015 -11.19676 -11.11572 -11.10531 -11.03393 -10.75934 -10.52252 -10.09060 -9.72624 -9.24846 -9.19002 -9.00293 -7.68544 -7.55531 -6.82801 -4.43969 1.20683 1.48921 2.12411 2.78867 3.06920 3.10130 3.14053 3.14151 3.24934 3.36408 3.74408 3.90315 4.02165 4.09529 4.43147 4.43594 4.59747 4.75849 5.10463 5.19452 5.27478 5.28940 5.43939 5.57150 5.66363 5.72753 6.05171 6.24112 6.45530 6.67945 6.83575 6.93996 6.97140 7.17856 7.34043 7.60374 7.69001 7.85070 7.95996 8.13981 8.46811 8.72534 8.78595 8.80966 10.12025 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.002528 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.478896 B =11074.350127 C =11878.074390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.058 3.942 3 O -0.338 6.338 4 C 0.440 3.560 5 O -0.457 6.457 6 C 0.312 3.688 7 F -0.165 7.165 8 F -0.167 7.167 9 C 0.095 3.905 10 N -0.736 5.736 11 C 0.572 3.428 12 O -0.538 6.538 13 C -0.127 4.127 14 C -0.217 4.217 15 C -0.096 4.096 16 C -0.210 4.210 17 C 0.098 3.902 18 C -0.459 4.459 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.911 3.089 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.090 4.090 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.406 0.594 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.285 0.715 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.696 -9.042 6.100 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 O -0.254 6.254 4 C 0.277 3.723 5 O -0.341 6.341 6 C 0.273 3.727 7 F -0.146 7.146 8 F -0.148 7.148 9 C -0.030 4.030 10 N -0.393 5.393 11 C 0.363 3.637 12 O -0.415 6.415 13 C -0.131 4.131 14 C -0.238 4.238 15 C -0.114 4.114 16 C -0.230 4.230 17 C 0.095 3.905 18 C -0.487 4.487 19 H 0.100 0.900 20 C -0.147 4.147 21 N -0.407 5.407 22 Si 0.736 3.264 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.110 4.110 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.243 0.757 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.041 -10.204 5.578 19.813 hybrid contribution 0.249 0.281 0.049 0.379 sum -15.791 -9.923 5.627 19.481 Atomic orbital electron populations 1.21833 0.91868 1.03371 1.03985 1.23284 0.96001 0.78861 1.03357 1.86576 1.22355 1.33818 1.82627 1.23626 0.82403 0.91474 0.74811 1.90793 1.60326 1.40965 1.42036 1.20919 0.91799 0.82991 0.76979 1.93160 1.96889 1.88663 1.35915 1.93155 1.74099 1.72352 1.75210 1.22061 0.88269 0.88771 1.03893 1.45757 1.18850 1.07952 1.66739 1.18873 0.79238 0.90016 0.75568 1.90726 1.59648 1.45019 1.46063 1.19344 0.97221 0.90063 1.06438 1.20347 0.99135 0.93296 1.10975 1.20441 0.95803 0.95248 0.99954 1.21118 0.95087 0.97680 1.09085 1.17603 0.92699 0.90399 0.89761 1.19603 0.99724 1.09482 1.19925 0.89981 1.25975 1.00512 0.93835 0.94333 1.69782 1.37267 1.16783 1.16875 0.86255 0.82152 0.79835 0.78197 1.19117 1.20216 1.18557 1.21645 0.93288 0.97992 0.98102 0.91178 0.91096 0.89732 0.90382 0.90484 0.87023 0.87737 0.75742 0.89177 0.88748 0.88515 0.90383 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 37.16 0.38 -0.36 16 2 C 0.06 0.42 6.19 37.16 0.23 0.65 16 3 O -0.34 -3.45 10.05 -39.26 -0.39 -3.84 16 4 C 0.44 5.12 7.34 36.00 0.26 5.39 16 5 O -0.46 -5.99 15.84 -18.75 -0.30 -6.29 16 6 C 0.31 3.78 1.99 -27.88 -0.06 3.72 16 7 F -0.17 -2.04 16.91 2.25 0.04 -2.00 16 8 F -0.17 -2.05 16.77 2.25 0.04 -2.02 16 9 C 0.10 1.34 4.72 -4.04 -0.02 1.33 16 10 N -0.74 -12.21 5.37 -61.24 -0.33 -12.54 16 11 C 0.57 12.30 7.77 -12.31 -0.10 12.21 16 12 O -0.54 -13.15 16.33 5.32 0.09 -13.06 16 13 C -0.13 -2.97 5.87 -105.04 -0.62 -3.59 16 14 C -0.22 -4.53 9.55 -38.92 -0.37 -4.90 16 15 C -0.10 -2.03 10.01 -39.73 -0.40 -2.42 16 16 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 17 C 0.10 2.56 5.57 -106.87 -0.60 1.97 16 18 C -0.46 -11.91 9.05 -37.73 -0.34 -12.25 16 19 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 20 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 21 N -0.78 -20.54 10.96 55.55 0.61 -19.93 16 22 Si 0.91 18.65 29.59 -169.99 -5.03 13.61 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 26 C -0.09 -2.37 8.24 -38.44 -0.32 -2.69 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.11 1.59 7.87 -51.93 -0.41 1.18 16 33 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.41 6.02 6.38 -40.82 -0.26 5.75 16 35 H 0.09 1.56 6.38 -52.48 -0.33 1.23 16 36 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 38 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 39 H 0.14 3.82 5.74 -52.49 -0.30 3.52 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -30.03 352.18 -6.61 -36.64 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.24 Total: 8.65 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.40 Total: -4.53 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.28 Total: -32.47 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.60 Total: -23.20 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.08 Total: -4.02 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.03 -6.61 -36.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682520.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.841 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds