Wall clock time and date at job start Tue Mar 31 2020 15:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47427 * 2 1 4 4 C 1.34229 * 117.00262 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99902 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00011 * 179.97438 * 4 3 2 7 7 F 1.39906 * 109.46748 * 85.00435 * 6 4 3 8 8 F 1.39902 * 109.47353 * 325.00333 * 6 4 3 9 9 C 1.52998 * 109.47250 * 205.00254 * 6 4 3 10 10 N 1.46498 * 109.47424 * 180.02562 * 9 6 4 11 11 C 1.34773 * 120.00154 * 180.02562 * 10 9 6 12 12 O 1.21548 * 120.00201 * 359.97438 * 11 10 9 13 13 C 1.47887 * 120.00116 * 180.02562 * 11 10 9 14 14 C 1.39923 * 120.02273 * 359.71517 * 13 11 10 15 15 C 1.38326 * 120.35871 * 179.74522 * 14 13 11 16 16 C 1.37755 * 120.40853 * 0.56468 * 15 14 13 17 17 C 1.40752 * 120.04221 * 359.68880 * 16 15 14 18 18 C 1.41438 * 120.18004 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99683 * 24.44694 * 18 17 16 20 20 C 1.39935 * 120.00027 * 204.44460 * 18 17 16 21 21 N 1.30820 * 120.00060 * 17.87968 * 20 18 17 22 22 Si 1.86798 * 119.99804 * 197.88502 * 20 18 17 23 23 H 1.48505 * 109.47353 * 89.99731 * 22 20 18 24 24 H 1.48498 * 109.46976 * 209.99993 * 22 20 18 25 25 H 1.48499 * 109.47271 * 329.99830 * 22 20 18 26 26 C 1.38990 * 120.02650 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.47313 * 300.00267 * 1 2 3 28 28 H 1.09003 * 109.46872 * 59.99888 * 1 2 3 29 29 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47085 * 240.00235 * 2 1 3 31 31 H 1.09003 * 109.46872 * 120.00112 * 2 1 3 32 32 H 1.09004 * 109.46979 * 300.00543 * 9 6 4 33 33 H 1.09006 * 109.46730 * 60.00025 * 9 6 4 34 34 H 0.97001 * 119.99564 * 0.02562 * 10 9 6 35 35 H 1.08005 * 119.82165 * 0.02562 * 14 13 11 36 36 H 1.08003 * 119.79796 * 180.27758 * 15 14 13 37 37 H 1.08003 * 119.98254 * 179.72326 * 16 15 14 38 38 H 0.97000 * 119.99984 * 180.02562 * 21 20 18 39 39 H 1.08002 * 120.20219 * 359.94582 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 9 3.9923 3.4129 1.3138 8 9 3.1010 3.7809 -0.7574 9 6 5.3241 2.9086 -0.6090 10 7 5.8843 4.2622 -0.6090 11 6 7.1194 4.4804 -1.1022 12 8 7.7688 3.5540 -1.5466 13 6 7.6852 5.8467 -1.1017 14 6 6.9363 6.9144 -0.5947 15 6 7.4607 8.1944 -0.5860 16 6 8.7213 8.4348 -1.0867 17 6 9.4874 7.3743 -1.6057 18 6 10.7823 7.6178 -2.1200 19 1 11.3449 8.4757 -1.7824 20 6 11.3344 6.7472 -3.0663 21 7 10.5607 5.9296 -3.7328 22 14 13.1763 6.7524 -3.3775 23 1 13.8351 5.7822 -2.4664 24 1 13.4412 6.3666 -4.7868 25 1 13.7168 8.1126 -3.1267 26 6 8.9591 6.0722 -1.6097 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.9628 2.2513 -0.0189 33 1 5.2684 2.5380 -1.6326 34 1 5.3663 5.0015 -0.2540 35 1 5.9451 6.7374 -0.2039 36 1 6.8764 9.0111 -0.1884 37 1 9.1222 9.4377 -1.0806 38 1 10.9435 5.3258 -4.3884 39 1 9.5395 5.2517 -2.0051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188682520.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:12 Heat of formation + Delta-G solvation = -216.941943 kcal Electronic energy + Delta-G solvation = -27075.788834 eV Core-core repulsion = 22618.484519 eV Total energy + Delta-G solvation = -4457.304315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.65945 -48.63708 -41.92002 -41.00380 -38.89833 -38.29658 -36.21764 -35.56381 -32.94928 -32.46663 -31.32867 -30.94080 -27.38059 -26.69938 -24.35944 -23.64554 -22.82620 -22.56843 -21.45964 -20.06734 -19.75184 -19.40920 -18.70906 -18.23247 -17.65189 -17.26188 -17.17798 -16.62733 -16.35262 -16.29577 -15.91003 -15.47537 -15.40278 -15.14683 -15.04897 -14.91237 -14.50975 -14.29809 -14.28179 -14.20853 -13.73170 -13.46866 -13.38425 -13.15502 -12.96548 -12.81675 -12.63278 -12.53649 -12.18845 -11.99258 -11.92549 -11.71265 -11.51122 -11.08398 -10.95603 -10.49697 -9.51120 -9.39797 -8.66957 -6.38026 0.28454 0.31956 0.58889 1.00271 1.37468 1.48387 1.51610 1.88690 2.00913 2.11681 2.19540 2.40609 2.76200 2.99393 3.14896 3.68690 3.86624 3.93160 3.93803 4.06910 4.24428 4.25946 4.42571 4.57495 4.58913 4.88147 4.88778 4.91690 5.01414 5.08417 5.17481 5.24785 5.31066 5.50457 5.82488 5.90757 5.98451 6.04503 6.24555 6.33985 6.60199 6.87685 6.93558 7.09273 8.29980 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.002528 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.478896 B =11074.350127 C =11878.074390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.340 6.340 4 C 0.447 3.553 5 O -0.475 6.475 6 C 0.323 3.677 7 F -0.164 7.164 8 F -0.165 7.165 9 C 0.091 3.909 10 N -0.715 5.715 11 C 0.572 3.428 12 O -0.576 6.576 13 C -0.138 4.138 14 C -0.198 4.198 15 C -0.094 4.094 16 C -0.214 4.214 17 C 0.066 3.934 18 C -0.495 4.495 19 H 0.085 0.915 20 C 0.029 3.971 21 N -0.824 5.824 22 Si 0.983 3.017 23 H -0.266 1.266 24 H -0.270 1.270 25 H -0.251 1.251 26 C -0.128 4.128 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.417 0.583 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.287 0.713 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.829 -8.581 7.235 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.255 6.255 4 C 0.285 3.715 5 O -0.361 6.361 6 C 0.284 3.716 7 F -0.145 7.145 8 F -0.146 7.146 9 C -0.034 4.034 10 N -0.371 5.371 11 C 0.362 3.638 12 O -0.456 6.456 13 C -0.141 4.141 14 C -0.218 4.218 15 C -0.112 4.112 16 C -0.234 4.234 17 C 0.064 3.936 18 C -0.524 4.524 19 H 0.103 0.897 20 C -0.186 4.186 21 N -0.450 5.450 22 Si 0.803 3.197 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.174 1.174 26 C -0.149 4.149 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.256 0.744 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.244 -9.719 6.743 21.744 hybrid contribution 0.651 0.135 -0.193 0.692 sum -17.593 -9.584 6.550 21.078 Atomic orbital electron populations 1.21875 0.89872 1.04854 1.03970 1.23656 0.97540 0.77416 1.03874 1.86575 1.21169 1.35768 1.82016 1.23371 0.82916 0.90774 0.74467 1.90795 1.60842 1.41374 1.43105 1.20589 0.90597 0.83604 0.76774 1.93167 1.96832 1.88710 1.35760 1.93163 1.73892 1.72342 1.75184 1.22171 0.89573 0.87078 1.04543 1.45443 1.17197 1.09573 1.64896 1.18670 0.80396 0.89019 0.75684 1.90707 1.61070 1.45842 1.47947 1.19626 0.96617 0.91954 1.05903 1.20852 1.00301 0.92377 1.08235 1.20927 0.95049 0.96666 0.98590 1.21428 0.96017 0.97608 1.08327 1.17954 0.93619 0.91159 0.90871 1.19868 1.00667 1.10632 1.21265 0.89720 1.26850 1.05018 0.93070 0.93645 1.69877 1.39218 1.17983 1.17883 0.85188 0.76193 0.80126 0.78157 1.19130 1.19445 1.17393 1.21458 0.94970 0.97431 1.01026 0.91078 0.91190 0.87476 0.90015 0.89928 0.87069 0.87358 0.74419 0.84769 0.84260 0.87218 0.90241 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 71.98 0.74 -0.35 16 2 C 0.05 0.60 6.19 71.98 0.45 1.04 16 3 O -0.34 -6.31 10.05 -51.41 -0.52 -6.83 16 4 C 0.45 9.73 7.34 71.24 0.52 10.25 16 5 O -0.48 -11.97 15.84 21.96 0.35 -11.62 16 6 C 0.32 7.21 1.99 29.85 0.06 7.27 16 7 F -0.16 -3.66 16.91 44.97 0.76 -2.90 16 8 F -0.17 -3.65 16.77 44.97 0.75 -2.90 16 9 C 0.09 2.46 4.72 86.38 0.41 2.87 16 10 N -0.72 -22.60 5.37 -465.93 -2.50 -25.10 16 11 C 0.57 24.63 7.77 86.80 0.67 25.30 16 12 O -0.58 -29.08 16.33 -3.87 -0.06 -29.14 16 13 C -0.14 -6.42 5.87 -20.13 -0.12 -6.54 16 14 C -0.20 -7.68 9.55 22.70 0.22 -7.47 16 15 C -0.09 -3.68 10.01 22.18 0.22 -3.46 16 16 C -0.21 -9.86 9.78 22.77 0.22 -9.64 16 17 C 0.07 3.57 5.57 -21.32 -0.12 3.45 16 18 C -0.50 -26.72 9.05 23.47 0.21 -26.51 16 19 H 0.08 4.31 7.91 -2.91 -0.02 4.29 16 20 C 0.03 1.52 5.14 85.25 0.44 1.96 16 21 N -0.82 -45.62 10.96 21.82 0.24 -45.38 16 22 Si 0.98 39.44 29.59 68.60 2.03 41.47 16 23 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 24 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 26 C -0.13 -7.04 8.24 23.01 0.19 -6.85 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.98 8.13 -2.39 -0.02 0.96 16 31 H 0.08 0.96 8.13 -2.39 -0.02 0.94 16 32 H 0.11 3.10 7.87 -2.39 -0.02 3.08 16 33 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 34 H 0.42 11.09 6.38 -92.71 -0.59 10.50 16 35 H 0.13 3.98 6.38 -2.91 -0.02 3.96 16 36 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 37 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16 39 H 0.10 6.19 5.74 -2.91 -0.02 6.18 16 Total: -1.00 -68.25 352.18 5.69 -62.56 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.52 Total: 28.51 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 4.12 Total: -8.69 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -2.26 Total: -70.47 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -0.23 Total: -47.59 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.51 Total: -5.79 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -68.25 5.69 -62.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682520.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.378 kcal (2) G-P(sol) polarization free energy of solvation -68.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds