Wall clock time and date at job start Tue Mar 31 2020 15:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00282 * 2 1 4 4 C 1.52998 * 109.47164 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47072 * 303.83471 * 4 3 2 6 6 N 1.46497 * 109.46970 * 303.24070 * 5 4 3 7 7 S 1.65601 * 119.99813 * 164.79315 * 6 5 4 8 8 O 1.42099 * 106.40366 * 311.46191 * 7 6 5 9 9 O 1.42102 * 106.40274 * 178.54108 * 7 6 5 10 10 C 1.76203 * 107.21669 * 65.00227 * 7 6 5 11 11 H 1.07994 * 119.99955 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99629 * 180.02562 * 10 7 6 13 13 N 1.31513 * 120.00504 * 359.97438 * 12 10 7 14 14 Si 1.86808 * 119.99627 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.46888 * 90.00152 * 14 12 10 16 16 H 1.48503 * 109.46775 * 209.99758 * 14 12 10 17 17 H 1.48497 * 109.47175 * 329.99930 * 14 12 10 18 18 C 1.52999 * 109.47183 * 63.83376 * 4 3 2 19 19 C 1.52998 * 109.47183 * 179.97438 * 18 4 3 20 20 C 1.53002 * 109.46996 * 299.99873 * 19 18 4 21 21 F 1.39895 * 109.47158 * 300.00027 * 20 19 18 22 22 F 1.39905 * 109.46871 * 179.97438 * 20 19 18 23 23 C 1.53005 * 109.46857 * 60.00289 * 20 19 18 24 24 C 1.52998 * 109.47082 * 299.99658 * 23 20 19 25 25 H 1.09000 * 109.47251 * 300.00248 * 1 2 3 26 26 H 1.09002 * 109.47127 * 60.00105 * 1 2 3 27 27 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46678 * 59.99565 * 3 2 1 29 29 H 1.08996 * 109.46915 * 299.99986 * 3 2 1 30 30 H 1.09004 * 109.46916 * 183.24142 * 5 4 3 31 31 H 1.08996 * 109.47036 * 63.24511 * 5 4 3 32 32 H 0.96998 * 120.00244 * 344.79764 * 6 5 4 33 33 H 0.97003 * 120.00495 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.47230 * 299.99775 * 18 4 3 35 35 H 1.08995 * 109.47170 * 60.00024 * 18 4 3 36 36 H 1.09003 * 109.46931 * 180.02562 * 19 18 4 37 37 H 1.08995 * 109.47048 * 59.99949 * 19 18 4 38 38 H 1.09003 * 109.47035 * 180.02562 * 23 20 19 39 39 H 1.08995 * 109.47465 * 59.99753 * 23 20 19 40 40 H 1.09004 * 109.46905 * 300.00455 * 24 23 20 41 41 H 1.08997 * 109.47073 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9799 0.3438 1.1992 6 7 3.4746 0.9485 2.4341 7 16 3.4703 0.0762 3.8417 8 8 2.8898 -1.1832 3.5316 9 8 2.9603 0.9404 4.8479 10 6 5.1513 -0.2412 4.2637 11 1 5.9455 0.1255 3.6304 12 6 5.4527 -0.9577 5.4025 13 7 4.4856 -1.4038 6.1741 14 14 7.2349 -1.2936 5.8503 15 1 7.7458 -0.1934 6.7070 16 1 7.3260 -2.5788 6.5886 17 1 8.0496 -1.3755 4.6114 18 6 3.9942 0.5099 -1.2937 19 6 5.5194 0.3896 -1.2933 20 6 6.1410 1.7844 -1.1972 21 9 5.7340 2.5528 -2.2932 22 9 7.5357 1.6743 -1.1963 23 6 5.6823 2.4590 0.0972 24 6 4.1570 2.5793 0.0968 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 5.0688 0.3056 1.2325 31 1 3.5838 -0.6669 1.1009 32 1 3.1424 1.8598 2.4273 33 1 4.6976 -1.9082 6.9750 34 1 3.5510 -0.4836 -1.3624 35 1 3.6776 1.1088 -2.1475 36 1 5.8462 -0.0906 -2.2157 37 1 5.8364 -0.2091 -0.4395 38 1 6.1247 3.4529 0.1655 39 1 5.9993 1.8603 0.9511 40 1 3.8400 3.1780 -0.7571 41 1 3.8303 3.0603 1.0188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193000654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:51 Heat of formation + Delta-G solvation = -255.245239 kcal Electronic energy + Delta-G solvation = -28256.229012 eV Core-core repulsion = 23932.707693 eV Total energy + Delta-G solvation = -4323.521319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.115 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.96810 -46.94959 -39.73464 -37.03482 -35.15760 -33.91365 -33.80900 -33.03416 -31.31212 -30.82914 -26.93256 -26.12800 -25.35980 -24.87234 -23.24738 -21.44169 -19.10167 -18.76099 -17.51905 -17.35526 -16.82709 -16.33799 -16.14239 -16.03568 -15.88168 -15.58239 -14.92855 -14.72487 -14.19771 -14.01499 -13.77675 -13.65913 -13.57201 -13.27938 -13.13269 -12.91725 -12.52285 -12.51297 -12.19290 -12.03265 -11.76884 -11.68745 -11.36780 -11.23357 -11.20653 -11.14372 -10.74291 -10.62280 -10.58616 -10.24172 -10.15345 -10.12079 -10.07008 -9.53710 -9.23670 -8.95627 -8.42143 -6.68867 -5.30678 2.38186 3.07152 3.14336 3.20417 3.74051 3.77123 4.04265 4.07656 4.29023 4.33065 4.62645 4.65588 4.83087 4.87511 4.97366 5.03527 5.13895 5.20542 5.29691 5.37378 5.45345 5.52805 5.58591 5.66020 5.72687 5.76316 5.78286 5.83553 5.89783 5.94791 6.02205 6.12925 6.23493 6.37385 6.56916 6.86037 7.25942 7.33041 7.90919 7.98410 8.90346 10.25192 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.005517 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.029031 B = 5074.007244 C = 6784.513703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.377 6.377 3 C 0.075 3.925 4 C -0.067 4.067 5 C 0.137 3.863 6 N -1.134 6.134 7 S 2.716 3.284 8 O -1.002 7.002 9 O -1.011 7.011 10 C -1.021 5.021 11 H 0.101 0.899 12 C 0.133 3.867 13 N -0.845 5.845 14 Si 0.918 3.082 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.262 1.262 18 C -0.102 4.102 19 C -0.164 4.164 20 C 0.288 3.712 21 F -0.203 7.203 22 F -0.204 7.204 23 C -0.162 4.162 24 C -0.107 4.107 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.290 0.710 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 6.345 -15.583 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.002 4.002 4 C -0.069 4.069 5 C 0.010 3.990 6 N -0.890 5.890 7 S 2.816 3.184 8 O -0.992 6.992 9 O -1.001 7.001 10 C -1.154 5.154 11 H 0.119 0.881 12 C -0.084 4.084 13 N -0.475 5.475 14 Si 0.742 3.258 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.186 1.186 18 C -0.140 4.140 19 C -0.202 4.202 20 C 0.252 3.748 21 F -0.184 7.184 22 F -0.185 7.185 23 C -0.200 4.200 24 C -0.145 4.145 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.229 0.771 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.570 5.625 -14.994 16.091 hybrid contribution 1.390 0.613 0.090 1.522 sum -0.180 6.238 -14.904 16.158 Atomic orbital electron populations 1.22717 0.81317 1.02839 0.99514 1.87922 1.19299 1.27063 1.95260 1.22446 0.92382 0.85356 1.00041 1.20873 0.93952 0.95875 0.96191 1.21157 0.97897 0.97401 0.82510 1.55984 1.80900 1.27219 1.24853 1.00362 0.76355 0.71995 0.69720 1.93365 1.79416 1.42812 1.83641 1.93369 1.82292 1.68185 1.56247 1.30568 1.17805 1.48334 1.18711 0.88078 1.24729 1.00084 0.90426 0.93202 1.69896 1.33735 1.30410 1.13480 0.86208 0.81952 0.78400 0.79276 1.19242 1.19987 1.18626 1.21492 0.92929 1.02964 0.96617 1.22631 0.97681 0.94139 1.05773 1.21165 0.75636 0.92510 0.85487 1.92964 1.90253 1.77811 1.57398 1.93005 1.31678 1.96853 1.96968 1.22581 0.97911 1.03153 0.96332 1.21493 0.93218 0.96199 1.03602 0.94036 0.94607 0.89583 0.92748 0.93424 0.92212 0.89452 0.77131 0.89929 0.89083 0.90877 0.89445 0.87860 0.89352 0.87449 0.90692 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.39 9.42 -35.23 -0.33 -5.72 16 3 C 0.07 0.90 4.54 37.16 0.17 1.07 16 4 C -0.07 -0.82 0.36 -154.51 -0.06 -0.87 16 5 C 0.14 2.19 4.18 -4.04 -0.02 2.18 16 6 N -1.13 -21.07 5.36 -10.61 -0.06 -21.12 16 7 S 2.72 70.21 5.02 -107.50 -0.54 69.67 16 8 O -1.00 -28.90 17.49 -57.17 -1.00 -29.90 16 9 O -1.01 -29.14 18.02 -57.17 -1.03 -30.17 16 10 C -1.02 -27.44 9.72 30.60 0.30 -27.14 16 11 H 0.10 2.45 7.81 -52.49 -0.41 2.04 16 12 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 13 N -0.85 -24.78 13.19 55.43 0.73 -24.05 16 14 Si 0.92 20.42 29.54 -169.99 -5.02 15.40 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 18 C -0.10 -1.09 4.50 -26.73 -0.12 -1.21 16 19 C -0.16 -1.76 5.18 -26.73 -0.14 -1.90 16 20 C 0.29 3.38 2.10 -26.73 -0.06 3.32 16 21 F -0.20 -2.48 16.02 2.25 0.04 -2.44 16 22 F -0.20 -2.73 17.06 2.25 0.04 -2.69 16 23 C -0.16 -1.80 5.18 -26.73 -0.14 -1.94 16 24 C -0.11 -1.13 4.47 -26.73 -0.12 -1.25 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.67 7.12 -51.93 -0.37 0.30 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.90 4.82 -51.93 -0.25 0.65 16 31 H 0.09 1.57 7.30 -51.93 -0.38 1.19 16 32 H 0.40 6.29 6.49 -34.47 -0.22 6.06 16 33 H 0.29 7.65 8.31 -40.82 -0.34 7.32 16 34 H 0.09 1.00 7.79 -51.93 -0.40 0.60 16 35 H 0.07 0.71 7.80 -51.93 -0.41 0.31 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.14 6.50 -51.93 -0.34 0.80 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 1.29 6.36 -51.93 -0.33 0.96 16 40 H 0.07 0.69 7.80 -51.93 -0.41 0.29 16 41 H 0.08 0.85 6.79 -51.93 -0.35 0.50 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -35.48 342.88 -6.71 -42.19 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.54 Total: 6.33 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 0.84 Total: -22.67 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.67 Total: -45.17 kcal Atomic # 8 Polarization: -63.43 SS G_CDS: -2.36 Total: -65.79 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.07 Total: -5.13 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 70.21 SS G_CDS: -0.54 Total: 69.67 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.48 -6.71 -42.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.058 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds