Wall clock time and date at job start Tue Mar 31 2020 15:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00282 * 2 1 4 4 C 1.52998 * 109.47164 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47072 * 303.83471 * 4 3 2 6 6 N 1.46497 * 109.46970 * 303.24070 * 5 4 3 7 7 S 1.65601 * 119.99813 * 164.79315 * 6 5 4 8 8 O 1.42099 * 106.40366 * 311.46191 * 7 6 5 9 9 O 1.42102 * 106.40274 * 178.54108 * 7 6 5 10 10 C 1.76203 * 107.21669 * 65.00227 * 7 6 5 11 11 H 1.07994 * 119.99955 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99629 * 180.02562 * 10 7 6 13 13 N 1.31513 * 120.00504 * 359.97438 * 12 10 7 14 14 Si 1.86808 * 119.99627 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.46888 * 90.00152 * 14 12 10 16 16 H 1.48503 * 109.46775 * 209.99758 * 14 12 10 17 17 H 1.48497 * 109.47175 * 329.99930 * 14 12 10 18 18 C 1.52999 * 109.47183 * 63.83376 * 4 3 2 19 19 C 1.52998 * 109.47183 * 179.97438 * 18 4 3 20 20 C 1.53002 * 109.46996 * 299.99873 * 19 18 4 21 21 F 1.39895 * 109.47158 * 300.00027 * 20 19 18 22 22 F 1.39905 * 109.46871 * 179.97438 * 20 19 18 23 23 C 1.53005 * 109.46857 * 60.00289 * 20 19 18 24 24 C 1.52998 * 109.47082 * 299.99658 * 23 20 19 25 25 H 1.09000 * 109.47251 * 300.00248 * 1 2 3 26 26 H 1.09002 * 109.47127 * 60.00105 * 1 2 3 27 27 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46678 * 59.99565 * 3 2 1 29 29 H 1.08996 * 109.46915 * 299.99986 * 3 2 1 30 30 H 1.09004 * 109.46916 * 183.24142 * 5 4 3 31 31 H 1.08996 * 109.47036 * 63.24511 * 5 4 3 32 32 H 0.96998 * 120.00244 * 344.79764 * 6 5 4 33 33 H 0.97003 * 120.00495 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.47230 * 299.99775 * 18 4 3 35 35 H 1.08995 * 109.47170 * 60.00024 * 18 4 3 36 36 H 1.09003 * 109.46931 * 180.02562 * 19 18 4 37 37 H 1.08995 * 109.47048 * 59.99949 * 19 18 4 38 38 H 1.09003 * 109.47035 * 180.02562 * 23 20 19 39 39 H 1.08995 * 109.47465 * 59.99753 * 23 20 19 40 40 H 1.09004 * 109.46905 * 300.00455 * 24 23 20 41 41 H 1.08997 * 109.47073 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9799 0.3438 1.1992 6 7 3.4746 0.9485 2.4341 7 16 3.4703 0.0762 3.8417 8 8 2.8898 -1.1832 3.5316 9 8 2.9603 0.9404 4.8479 10 6 5.1513 -0.2412 4.2637 11 1 5.9455 0.1255 3.6304 12 6 5.4527 -0.9577 5.4025 13 7 4.4856 -1.4038 6.1741 14 14 7.2349 -1.2936 5.8503 15 1 7.7458 -0.1934 6.7070 16 1 7.3260 -2.5788 6.5886 17 1 8.0496 -1.3755 4.6114 18 6 3.9942 0.5099 -1.2937 19 6 5.5194 0.3896 -1.2933 20 6 6.1410 1.7844 -1.1972 21 9 5.7340 2.5528 -2.2932 22 9 7.5357 1.6743 -1.1963 23 6 5.6823 2.4590 0.0972 24 6 4.1570 2.5793 0.0968 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 5.0688 0.3056 1.2325 31 1 3.5838 -0.6669 1.1009 32 1 3.1424 1.8598 2.4273 33 1 4.6976 -1.9082 6.9750 34 1 3.5510 -0.4836 -1.3624 35 1 3.6776 1.1088 -2.1475 36 1 5.8462 -0.0906 -2.2157 37 1 5.8364 -0.2091 -0.4395 38 1 6.1247 3.4529 0.1655 39 1 5.9993 1.8603 0.9511 40 1 3.8400 3.1780 -0.7571 41 1 3.8303 3.0603 1.0188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193000654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:50 Heat of formation + Delta-G solvation = -282.495784 kcal Electronic energy + Delta-G solvation = -28257.410684 eV Core-core repulsion = 23932.707693 eV Total energy + Delta-G solvation = -4324.702991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.115 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.91025 -47.90164 -40.73862 -38.01701 -37.33302 -36.08141 -35.32001 -34.98458 -32.18365 -31.87627 -28.23579 -27.85136 -26.63395 -25.81791 -24.12106 -22.36539 -21.02551 -19.88814 -19.33326 -18.33295 -18.26636 -17.70898 -17.26394 -17.07636 -17.05516 -16.85229 -16.48217 -16.09452 -15.89592 -15.37951 -15.09359 -14.86767 -14.63843 -14.31156 -14.20255 -14.02334 -13.92898 -13.52648 -13.37469 -13.30218 -13.06631 -13.00335 -12.91202 -12.59267 -12.45814 -12.43228 -12.35872 -12.29734 -12.24052 -11.95804 -11.54814 -11.39492 -11.23418 -11.01201 -10.93374 -10.49462 -10.04509 -8.73290 -7.45473 0.41527 1.34996 1.35393 1.51009 2.21874 2.60348 2.83389 2.85522 3.06752 3.17887 3.38664 3.45707 3.69887 3.76258 3.93120 4.00321 4.14230 4.18907 4.36855 4.42297 4.48270 4.55522 4.60133 4.64019 4.71554 4.73224 4.76330 4.86362 4.90466 4.90664 5.00586 5.06024 5.10486 5.18080 5.30499 5.33594 5.43169 5.92620 6.33295 6.45305 6.81122 8.22905 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.005517 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.029031 B = 5074.007244 C = 6784.513703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.068 3.932 4 C -0.061 4.061 5 C 0.131 3.869 6 N -1.114 6.114 7 S 2.722 3.278 8 O -1.042 7.042 9 O -1.049 7.049 10 C -1.038 5.038 11 H 0.122 0.878 12 C 0.070 3.930 13 N -0.896 5.896 14 Si 0.986 3.014 15 H -0.255 1.255 16 H -0.265 1.265 17 H -0.246 1.246 18 C -0.096 4.096 19 C -0.165 4.165 20 C 0.287 3.713 21 F -0.204 7.204 22 F -0.215 7.215 23 C -0.164 4.164 24 C -0.105 4.105 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.412 0.588 33 H 0.298 0.702 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 7.437 -17.272 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.009 4.009 4 C -0.062 4.062 5 C 0.005 3.995 6 N -0.875 5.875 7 S 2.823 3.177 8 O -1.031 7.031 9 O -1.039 7.039 10 C -1.172 5.172 11 H 0.140 0.860 12 C -0.142 4.142 13 N -0.527 5.527 14 Si 0.804 3.196 15 H -0.180 1.180 16 H -0.189 1.189 17 H -0.169 1.169 18 C -0.134 4.134 19 C -0.203 4.203 20 C 0.251 3.749 21 F -0.185 7.185 22 F -0.196 7.196 23 C -0.202 4.202 24 C -0.142 4.142 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.247 0.753 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.284 6.737 -16.694 18.005 hybrid contribution 0.927 0.300 0.532 1.110 sum 0.643 7.037 -16.162 17.639 Atomic orbital electron populations 1.22864 0.80248 1.03348 1.00560 1.87885 1.20695 1.28464 1.95485 1.22613 0.92119 0.84865 1.01256 1.20859 0.94316 0.96252 0.94807 1.21362 0.98354 0.97007 0.82768 1.55272 1.80917 1.27481 1.23822 0.99788 0.76159 0.71412 0.70374 1.93311 1.80196 1.45130 1.84507 1.93306 1.82978 1.68759 1.58855 1.30932 1.18714 1.48301 1.19240 0.85950 1.25980 1.05327 0.89881 0.93038 1.69996 1.36486 1.31729 1.14498 0.85192 0.75646 0.78928 0.79831 1.17954 1.18934 1.16873 1.21453 0.92733 1.02917 0.96252 1.22643 0.97667 0.93720 1.06240 1.21274 0.75060 0.92925 0.85627 1.92961 1.90183 1.77870 1.57467 1.92984 1.32686 1.96922 1.97023 1.22601 0.98380 1.03619 0.95575 1.21519 0.92621 0.95243 1.04838 0.94701 0.91777 0.89520 0.93312 0.90355 0.91241 0.91888 0.75288 0.89227 0.89587 0.89022 0.88086 0.88568 0.88107 0.88585 0.88486 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -11.29 9.42 -148.98 -1.40 -12.70 16 3 C 0.07 1.52 4.54 71.98 0.33 1.84 16 4 C -0.06 -1.35 0.36 -52.18 -0.02 -1.37 16 5 C 0.13 4.12 4.18 86.38 0.36 4.48 16 6 N -1.11 -41.31 5.36 -187.49 -1.00 -42.32 16 7 S 2.72 143.82 5.02 -56.49 -0.28 143.53 16 8 O -1.04 -62.16 17.49 -128.00 -2.24 -64.40 16 9 O -1.05 -62.10 18.02 -128.00 -2.31 -64.41 16 10 C -1.04 -55.92 9.72 67.73 0.66 -55.26 16 11 H 0.12 5.82 7.81 -2.91 -0.02 5.79 16 12 C 0.07 3.89 5.46 84.65 0.46 4.35 16 13 N -0.90 -53.51 13.19 21.45 0.28 -53.23 16 14 Si 0.99 40.97 29.54 68.60 2.03 42.99 16 15 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 16 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 17 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 18 C -0.10 -1.83 4.50 30.59 0.14 -1.69 16 19 C -0.16 -3.21 5.18 30.59 0.16 -3.05 16 20 C 0.29 6.07 2.10 30.60 0.06 6.13 16 21 F -0.20 -4.37 16.02 44.97 0.72 -3.65 16 22 F -0.22 -5.37 17.06 44.97 0.77 -4.60 16 23 C -0.16 -3.27 5.18 30.60 0.16 -3.11 16 24 C -0.10 -1.92 4.47 30.59 0.14 -1.78 16 25 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 1.12 7.12 -2.38 -0.02 1.11 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 2.05 4.82 -2.38 -0.01 2.04 16 31 H 0.06 2.31 7.30 -2.39 -0.02 2.29 16 32 H 0.41 12.81 6.49 -96.75 -0.63 12.18 16 33 H 0.30 16.01 8.31 -92.71 -0.77 15.23 16 34 H 0.09 1.77 7.79 -2.39 -0.02 1.75 16 35 H 0.09 1.46 7.80 -2.39 -0.02 1.44 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 2.01 6.50 -2.39 -0.02 2.00 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.10 2.15 6.36 -2.39 -0.02 2.13 16 40 H 0.10 1.41 7.80 -2.38 -0.02 1.39 16 41 H 0.09 1.55 6.79 -2.39 -0.02 1.53 16 Total: -1.00 -77.78 342.88 0.69 -77.09 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.43 Total: 29.32 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 3.69 Total: -47.64 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -0.72 Total: -95.54 kcal Atomic # 8 Polarization: -135.56 SS G_CDS: -5.95 Total: -141.51 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 1.49 Total: -8.25 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 143.82 SS G_CDS: -0.28 Total: 143.53 kcal Total: -77.78 0.69 -77.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.409 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -283.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds