Wall clock time and date at job start Tue Mar 31 2020 15:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00481 * 2 1 4 4 C 1.52998 * 109.47352 * 184.95714 * 3 2 1 5 5 N 1.46901 * 109.47300 * 63.87502 * 4 3 2 6 6 C 1.46895 * 111.00153 * 200.05159 * 5 4 3 7 7 C 1.50704 * 109.46707 * 72.42736 * 6 5 4 8 8 H 1.08005 * 120.00124 * 355.15065 * 7 6 5 9 9 C 1.37880 * 120.00032 * 175.15847 * 7 6 5 10 10 N 1.31512 * 120.00068 * 5.10612 * 9 7 6 11 11 Si 1.86802 * 120.00073 * 185.10737 * 9 7 6 12 12 H 1.48506 * 109.46753 * 94.99117 * 11 9 7 13 13 H 1.48491 * 109.47112 * 214.99141 * 11 9 7 14 14 H 1.48503 * 109.47061 * 334.99480 * 11 9 7 15 15 C 1.46911 * 110.99948 * 76.09970 * 5 4 3 16 16 H 1.08999 * 108.94525 * 313.12398 * 15 5 4 17 17 C 1.52116 * 109.02137 * 72.00163 * 15 5 4 18 18 C 1.53402 * 110.14377 * 181.20866 * 17 15 5 19 19 H 1.09003 * 109.84181 * 167.13394 * 18 17 15 20 20 C 1.52999 * 109.84422 * 46.22439 * 18 17 15 21 21 S 1.82044 * 107.54936 * 286.70866 * 18 17 15 22 22 C 1.77138 * 101.13437 * 45.01981 * 21 18 17 23 23 S 1.75769 * 125.20726 * 168.16420 * 22 21 18 24 24 C 1.75675 * 91.08128 * 179.54528 * 23 22 21 25 25 C 1.32600 * 109.69362 * 0.14788 * 24 23 22 26 26 C 1.35369 * 124.55351 * 348.08355 * 22 21 18 27 27 H 1.08998 * 109.47421 * 184.95925 * 1 2 3 28 28 H 1.09007 * 109.46532 * 304.95707 * 1 2 3 29 29 H 1.09000 * 109.47176 * 64.95308 * 1 2 3 30 30 H 1.09001 * 109.47174 * 64.95095 * 3 2 1 31 31 H 1.09005 * 109.46870 * 304.95566 * 3 2 1 32 32 H 1.09000 * 109.47127 * 303.87481 * 4 3 2 33 33 H 1.09005 * 109.46976 * 183.87574 * 4 3 2 34 34 H 1.08999 * 109.47480 * 192.41924 * 6 5 4 35 35 H 1.08994 * 109.47382 * 312.42644 * 6 5 4 36 36 H 0.96998 * 120.00636 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.35294 * 61.00010 * 17 15 5 38 38 H 1.08997 * 109.24589 * 301.34391 * 17 15 5 39 39 H 1.09002 * 109.47213 * 59.99818 * 20 18 17 40 40 H 1.09003 * 109.46655 * 179.97438 * 20 18 17 41 41 H 1.08994 * 109.47286 * 299.99429 * 20 18 17 42 42 H 1.07996 * 125.15199 * 180.12902 * 24 23 22 43 43 H 1.08001 * 121.97893 * 180.14189 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5306 1.1867 -0.1246 5 7 3.8702 0.5848 -1.4209 6 6 5.2268 0.0219 -1.4008 7 6 5.2377 -1.2326 -0.5656 8 1 4.3479 -1.5345 -0.0331 9 6 6.3836 -1.9947 -0.4811 10 7 7.4949 -1.5760 -1.0462 11 14 6.3576 -3.6219 0.4358 12 1 6.1176 -4.7280 -0.5256 13 1 7.6627 -3.8293 1.1131 14 1 5.2718 -3.6021 1.4487 15 6 3.7211 1.5601 -2.5095 16 1 2.7663 2.0737 -2.3961 17 6 4.8464 2.5796 -2.4193 18 6 4.6982 3.6295 -3.5279 19 1 5.3578 4.4740 -3.3283 20 6 3.2471 4.1095 -3.5980 21 16 5.1637 2.8376 -5.0996 22 6 4.3079 1.2921 -4.9706 23 16 4.0826 0.1458 -6.2839 24 6 3.2105 -0.9494 -5.2228 25 6 3.1342 -0.4269 -4.0065 26 6 3.7330 0.8250 -3.8376 27 1 -0.3634 -1.0238 0.0888 28 1 -0.3633 0.5889 0.8423 29 1 -0.3633 0.4351 -0.9310 30 1 1.7607 1.8143 0.9310 31 1 1.6202 1.8768 -0.8423 32 1 3.9131 0.5578 0.6793 33 1 3.9793 2.1777 -0.0555 34 1 5.5365 -0.2166 -2.4183 35 1 5.9159 0.7496 -0.9723 36 1 8.3010 -2.1122 -0.9871 37 1 5.8042 2.0710 -2.5289 38 1 4.8079 3.0722 -1.4477 39 1 2.9643 4.5521 -2.6429 40 1 3.1489 4.8552 -4.3869 41 1 2.5946 3.2636 -3.8139 42 1 2.7987 -1.9035 -5.5167 43 1 2.6391 -0.9384 -3.1943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204497109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:07 Heat of formation + Delta-G solvation = -0.661654 kcal Electronic energy + Delta-G solvation = -24918.440020 eV Core-core repulsion = 21602.940674 eV Total energy + Delta-G solvation = -3315.499346 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.35038 -37.41043 -35.90854 -34.44899 -32.45248 -30.05842 -29.10722 -27.80343 -26.51487 -25.93445 -24.62798 -22.77602 -22.24390 -21.25087 -19.72546 -18.71213 -17.34892 -16.68910 -16.00441 -15.67770 -15.31668 -15.17319 -14.90227 -14.55835 -14.46164 -13.99504 -13.56822 -13.41487 -13.15271 -12.86942 -12.53087 -12.39511 -12.10787 -12.10061 -11.90419 -11.77989 -11.42279 -11.23408 -11.06772 -10.91845 -10.83832 -10.68097 -10.47163 -10.35576 -10.22113 -9.80409 -9.67339 -9.28462 -9.24774 -9.09846 -8.37775 -7.87393 -7.25585 -7.06121 -5.95551 -3.95086 1.31659 1.45622 2.19141 2.41621 2.53421 3.17138 3.36701 3.43201 3.47712 4.18975 4.46538 4.67488 4.79590 4.93523 5.12215 5.23687 5.33544 5.40059 5.42996 5.49728 5.56772 5.64113 5.65902 5.69751 5.72575 5.78555 5.84989 5.90360 5.94528 6.00936 6.08739 6.22214 6.46988 6.53557 6.60564 6.77388 6.94959 7.25161 7.34048 7.59897 7.88065 8.13858 8.19820 8.58117 9.13842 9.68321 11.14974 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009612 B = 0.005753 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.291261 B = 4866.199441 C = 5848.488616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.070 3.930 4 C 0.056 3.944 5 N -0.511 5.511 6 C 0.196 3.804 7 C -0.501 4.501 8 H 0.066 0.934 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.893 3.107 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.139 3.861 16 H 0.082 0.918 17 C -0.156 4.156 18 C -0.065 4.065 19 H 0.113 0.887 20 C -0.145 4.145 21 S -0.086 6.086 22 C -0.194 4.194 23 S 0.109 5.891 24 C -0.225 4.225 25 C -0.078 4.078 26 C -0.065 4.065 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.095 0.905 33 H 0.039 0.961 34 H 0.035 0.965 35 H -0.010 1.010 36 H 0.259 0.741 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.162 0.838 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 10.212 -4.987 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C -0.007 4.007 4 C -0.072 4.072 5 N -0.234 5.234 6 C 0.072 3.928 7 C -0.540 4.540 8 H 0.085 0.915 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.198 1.198 15 C 0.028 3.972 16 H 0.100 0.900 17 C -0.196 4.196 18 C -0.195 4.195 19 H 0.130 0.870 20 C -0.204 4.204 21 S 0.152 5.848 22 C -0.423 4.423 23 S 0.370 5.630 24 C -0.362 4.362 25 C -0.109 4.109 26 C -0.085 4.085 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.007 0.993 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.180 0.820 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.053 10.024 -7.515 16.063 hybrid contribution -0.590 -0.643 3.028 3.152 sum -10.643 9.380 -4.487 14.879 Atomic orbital electron populations 1.22669 0.82876 1.02076 0.98973 1.88122 1.17736 1.27174 1.95001 1.22604 0.95024 0.84856 0.98217 1.22108 0.92342 0.98154 0.94638 1.62305 1.31597 1.29139 1.00335 1.19738 0.81380 0.93875 0.97826 1.21195 0.97186 1.07280 1.28300 0.91540 1.24954 0.95428 0.98045 0.96080 1.69971 1.00409 1.37978 1.45390 0.86555 0.77120 0.84323 0.79843 1.20848 1.21570 1.19797 1.20367 0.97154 0.90462 0.89244 0.90029 1.22434 1.02950 0.96496 0.97747 1.23502 1.00876 1.00279 0.94870 0.86953 1.22094 0.94227 1.01827 1.02211 1.85200 1.62522 1.09903 1.27133 1.25844 1.11795 1.04342 1.00351 1.83760 1.56329 1.11084 1.11847 1.25239 1.08926 1.04542 0.97508 1.20128 0.99634 0.94336 0.96852 1.19536 1.00050 0.95697 0.93214 0.90169 0.95063 0.94770 0.94186 0.94364 0.88626 0.94278 0.94725 0.99263 0.93119 0.89000 0.90306 0.91702 0.91749 0.91569 0.82050 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.36 -6.19 10.63 -35.23 -0.37 -6.57 16 3 C 0.07 1.05 6.12 37.16 0.23 1.28 16 4 C 0.06 0.99 5.08 -3.82 -0.02 0.98 16 5 N -0.51 -10.22 3.65 -229.35 -0.84 -11.05 16 6 C 0.20 4.90 3.33 -4.98 -0.02 4.88 16 7 C -0.50 -13.86 8.42 -34.44 -0.29 -14.15 16 8 H 0.07 1.87 7.58 -52.48 -0.40 1.47 16 9 C 0.06 1.59 5.45 -17.82 -0.10 1.49 16 10 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 11 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.14 2.37 1.56 -68.76 -0.11 2.27 16 16 H 0.08 1.27 4.75 -51.93 -0.25 1.02 16 17 C -0.16 -2.49 3.96 -26.97 -0.11 -2.60 16 18 C -0.06 -0.86 3.53 -26.52 -0.09 -0.95 16 19 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 20 C -0.14 -1.62 8.42 37.16 0.31 -1.31 16 21 S -0.09 -1.33 21.90 -107.50 -2.35 -3.68 16 22 C -0.19 -3.37 6.54 29.71 0.19 -3.18 16 23 S 0.11 1.72 23.32 -107.50 -2.51 -0.79 16 24 C -0.22 -3.64 11.18 28.83 0.32 -3.32 16 25 C -0.08 -1.43 9.47 -40.90 -0.39 -1.82 16 26 C -0.06 -1.17 3.98 -104.52 -0.42 -1.59 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.53 6.67 -51.93 -0.35 0.18 16 32 H 0.10 1.96 6.99 -51.93 -0.36 1.59 16 33 H 0.04 0.62 6.23 -51.93 -0.32 0.30 16 34 H 0.03 0.97 7.06 -51.93 -0.37 0.60 16 35 H -0.01 -0.27 7.15 -51.93 -0.37 -0.65 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 37 H 0.09 1.80 6.55 -51.93 -0.34 1.46 16 38 H 0.08 1.16 6.44 -51.93 -0.33 0.83 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.83 5.94 -51.93 -0.31 0.52 16 42 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.15 2.92 7.91 -52.49 -0.42 2.51 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -30.61 358.36 -10.65 -41.26 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.33 Total: 0.97 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 0.63 Total: -16.50 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.10 Total: -37.06 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.37 Total: -6.57 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -4.86 Total: -4.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.61 -10.65 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204497109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.601 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds