Wall clock time and date at job start Tue Mar 31 2020 15:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00481 * 2 1 4 4 C 1.52998 * 109.47352 * 184.95714 * 3 2 1 5 5 N 1.46901 * 109.47300 * 63.87502 * 4 3 2 6 6 C 1.46895 * 111.00153 * 200.05159 * 5 4 3 7 7 C 1.50704 * 109.46707 * 72.42736 * 6 5 4 8 8 H 1.08005 * 120.00124 * 355.15065 * 7 6 5 9 9 C 1.37880 * 120.00032 * 175.15847 * 7 6 5 10 10 N 1.31512 * 120.00068 * 5.10612 * 9 7 6 11 11 Si 1.86802 * 120.00073 * 185.10737 * 9 7 6 12 12 H 1.48506 * 109.46753 * 94.99117 * 11 9 7 13 13 H 1.48491 * 109.47112 * 214.99141 * 11 9 7 14 14 H 1.48503 * 109.47061 * 334.99480 * 11 9 7 15 15 C 1.46911 * 110.99948 * 76.09970 * 5 4 3 16 16 H 1.08999 * 108.94525 * 313.12398 * 15 5 4 17 17 C 1.52116 * 109.02137 * 72.00163 * 15 5 4 18 18 C 1.53402 * 110.14377 * 181.20866 * 17 15 5 19 19 H 1.09003 * 109.84181 * 167.13394 * 18 17 15 20 20 C 1.52999 * 109.84422 * 46.22439 * 18 17 15 21 21 S 1.82044 * 107.54936 * 286.70866 * 18 17 15 22 22 C 1.77138 * 101.13437 * 45.01981 * 21 18 17 23 23 S 1.75769 * 125.20726 * 168.16420 * 22 21 18 24 24 C 1.75675 * 91.08128 * 179.54528 * 23 22 21 25 25 C 1.32600 * 109.69362 * 0.14788 * 24 23 22 26 26 C 1.35369 * 124.55351 * 348.08355 * 22 21 18 27 27 H 1.08998 * 109.47421 * 184.95925 * 1 2 3 28 28 H 1.09007 * 109.46532 * 304.95707 * 1 2 3 29 29 H 1.09000 * 109.47176 * 64.95308 * 1 2 3 30 30 H 1.09001 * 109.47174 * 64.95095 * 3 2 1 31 31 H 1.09005 * 109.46870 * 304.95566 * 3 2 1 32 32 H 1.09000 * 109.47127 * 303.87481 * 4 3 2 33 33 H 1.09005 * 109.46976 * 183.87574 * 4 3 2 34 34 H 1.08999 * 109.47480 * 192.41924 * 6 5 4 35 35 H 1.08994 * 109.47382 * 312.42644 * 6 5 4 36 36 H 0.96998 * 120.00636 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.35294 * 61.00010 * 17 15 5 38 38 H 1.08997 * 109.24589 * 301.34391 * 17 15 5 39 39 H 1.09002 * 109.47213 * 59.99818 * 20 18 17 40 40 H 1.09003 * 109.46655 * 179.97438 * 20 18 17 41 41 H 1.08994 * 109.47286 * 299.99429 * 20 18 17 42 42 H 1.07996 * 125.15199 * 180.12902 * 24 23 22 43 43 H 1.08001 * 121.97893 * 180.14189 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5306 1.1867 -0.1246 5 7 3.8702 0.5848 -1.4209 6 6 5.2268 0.0219 -1.4008 7 6 5.2377 -1.2326 -0.5656 8 1 4.3479 -1.5345 -0.0331 9 6 6.3836 -1.9947 -0.4811 10 7 7.4949 -1.5760 -1.0462 11 14 6.3576 -3.6219 0.4358 12 1 6.1176 -4.7280 -0.5256 13 1 7.6627 -3.8293 1.1131 14 1 5.2718 -3.6021 1.4487 15 6 3.7211 1.5601 -2.5095 16 1 2.7663 2.0737 -2.3961 17 6 4.8464 2.5796 -2.4193 18 6 4.6982 3.6295 -3.5279 19 1 5.3578 4.4740 -3.3283 20 6 3.2471 4.1095 -3.5980 21 16 5.1637 2.8376 -5.0996 22 6 4.3079 1.2921 -4.9706 23 16 4.0826 0.1458 -6.2839 24 6 3.2105 -0.9494 -5.2228 25 6 3.1342 -0.4269 -4.0065 26 6 3.7330 0.8250 -3.8376 27 1 -0.3634 -1.0238 0.0888 28 1 -0.3633 0.5889 0.8423 29 1 -0.3633 0.4351 -0.9310 30 1 1.7607 1.8143 0.9310 31 1 1.6202 1.8768 -0.8423 32 1 3.9131 0.5578 0.6793 33 1 3.9793 2.1777 -0.0555 34 1 5.5365 -0.2166 -2.4183 35 1 5.9159 0.7496 -0.9723 36 1 8.3010 -2.1122 -0.9871 37 1 5.8042 2.0710 -2.5289 38 1 4.8079 3.0722 -1.4477 39 1 2.9643 4.5521 -2.6429 40 1 3.1489 4.8552 -4.3869 41 1 2.5946 3.2636 -3.8139 42 1 2.7987 -1.9035 -5.5167 43 1 2.6391 -0.9384 -3.1943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204497109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:07 Heat of formation + Delta-G solvation = -19.037269 kcal Electronic energy + Delta-G solvation = -24919.236846 eV Core-core repulsion = 21602.940674 eV Total energy + Delta-G solvation = -3316.296172 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.74713 -38.61775 -37.30162 -35.81052 -34.48790 -31.31656 -30.60720 -29.35630 -27.86471 -27.03906 -26.19295 -24.27126 -23.74348 -22.57493 -21.13235 -20.03328 -18.74619 -18.56055 -17.23697 -17.19420 -16.60432 -16.47733 -16.33880 -16.19292 -15.71223 -15.38488 -14.86644 -14.63398 -14.52542 -14.24190 -14.16319 -13.75270 -13.58799 -13.47430 -13.21234 -13.09824 -12.86732 -12.67109 -12.52783 -12.45486 -12.35414 -12.05396 -11.99760 -11.90377 -11.72555 -11.36249 -11.20899 -10.95849 -10.57405 -10.53121 -10.38186 -9.18762 -8.87924 -8.31145 -8.14478 -6.21572 -0.01470 0.23663 0.87959 1.15771 1.31019 1.39192 1.40668 1.52134 1.79421 2.42435 3.06168 3.15753 3.26914 3.65953 3.71086 3.89055 4.08877 4.18634 4.30161 4.37822 4.40007 4.45815 4.53288 4.61142 4.63759 4.65914 4.68590 4.81862 4.84941 4.89121 4.93293 5.04769 5.08295 5.17108 5.24081 5.31494 5.35508 5.43527 5.57504 5.73834 6.15054 6.39544 6.52723 6.72606 6.95411 7.46611 8.95356 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009612 B = 0.005753 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.291261 B = 4866.199441 C = 5848.488616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.077 3.923 4 C 0.054 3.946 5 N -0.517 5.517 6 C 0.226 3.774 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.958 3.042 12 H -0.279 1.279 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.143 3.857 16 H 0.105 0.895 17 C -0.150 4.150 18 C -0.054 4.054 19 H 0.136 0.864 20 C -0.139 4.139 21 S -0.098 6.098 22 C -0.211 4.211 23 S 0.136 5.864 24 C -0.221 4.221 25 C -0.104 4.104 26 C -0.084 4.084 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.059 0.941 34 H -0.003 1.003 35 H -0.037 1.037 36 H 0.260 0.740 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.186 0.814 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.893 11.356 -4.843 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C 0.000 4.000 4 C -0.074 4.074 5 N -0.240 5.240 6 C 0.100 3.900 7 C -0.548 4.548 8 H 0.076 0.924 9 C -0.194 4.194 10 N -0.574 5.574 11 Si 0.784 3.216 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.190 1.190 15 C 0.032 3.968 16 H 0.123 0.877 17 C -0.190 4.190 18 C -0.185 4.185 19 H 0.154 0.846 20 C -0.198 4.198 21 S 0.140 5.860 22 C -0.440 4.440 23 S 0.397 5.603 24 C -0.359 4.359 25 C -0.135 4.135 26 C -0.105 4.105 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.015 0.985 35 H -0.019 1.019 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.203 0.797 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.792 11.184 -7.367 17.844 hybrid contribution -0.074 -0.968 2.955 3.110 sum -11.865 10.216 -4.412 16.267 Atomic orbital electron populations 1.22833 0.80598 1.03009 1.00409 1.88061 1.20364 1.28467 1.95358 1.22567 0.92439 0.84648 1.00304 1.22150 0.94950 0.98081 0.92239 1.62143 1.28095 1.31344 1.02375 1.19154 0.83598 0.92610 0.94598 1.21474 0.96744 1.08336 1.28230 0.92386 1.25772 0.95083 1.01468 0.97045 1.70096 1.01011 1.39367 1.46905 0.85541 0.77391 0.79989 0.78723 1.20480 1.20917 1.19040 1.20426 0.98513 0.89987 0.87828 0.87737 1.22296 1.00167 0.96837 0.99713 1.23620 1.03207 0.99582 0.92041 0.84605 1.22066 0.91830 1.01713 1.04179 1.85161 1.62808 1.09270 1.28767 1.26118 1.11626 1.05506 1.00769 1.83590 1.55530 1.10218 1.10917 1.25574 1.07949 1.05309 0.97043 1.20107 1.01112 0.95010 0.97253 1.19694 1.00759 0.96112 0.93915 0.89776 0.92946 0.93738 0.91426 0.92640 0.91999 0.92346 0.98454 1.01895 0.93086 0.93282 0.88865 0.89301 0.90073 0.92969 0.79666 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.40 -13.39 10.63 -148.98 -1.58 -14.98 16 3 C 0.08 2.17 6.12 71.98 0.44 2.61 16 4 C 0.05 1.90 5.08 86.30 0.44 2.34 16 5 N -0.52 -21.12 3.65 -879.54 -3.21 -24.33 16 6 C 0.23 11.84 3.33 85.56 0.28 12.12 16 7 C -0.51 -29.19 8.42 25.60 0.22 -28.97 16 8 H 0.06 3.36 7.58 -2.91 -0.02 3.34 16 9 C 0.00 0.23 5.45 84.66 0.46 0.69 16 10 N -0.93 -57.30 13.29 21.45 0.29 -57.02 16 11 Si 0.96 45.92 29.54 68.60 2.03 47.94 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 15 C 0.14 4.86 1.56 44.23 0.07 4.93 16 16 H 0.11 3.06 4.75 -2.39 -0.01 3.05 16 17 C -0.15 -4.74 3.96 30.44 0.12 -4.62 16 18 C -0.05 -1.34 3.53 30.73 0.11 -1.23 16 19 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 20 C -0.14 -2.68 8.42 71.98 0.61 -2.07 16 21 S -0.10 -2.97 21.90 -56.49 -1.24 -4.21 16 22 C -0.21 -7.33 6.54 67.16 0.44 -6.89 16 23 S 0.14 4.24 23.32 -56.49 -1.32 2.92 16 24 C -0.22 -7.13 11.18 66.66 0.75 -6.38 16 25 C -0.10 -3.85 9.47 21.49 0.20 -3.65 16 26 C -0.08 -3.09 3.98 -19.80 -0.08 -3.17 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.36 6.67 -2.38 -0.02 1.34 16 32 H 0.06 2.60 6.99 -2.39 -0.02 2.58 16 33 H 0.06 1.80 6.23 -2.38 -0.01 1.79 16 34 H 0.00 -0.16 7.06 -2.39 -0.02 -0.17 16 35 H -0.04 -2.06 7.15 -2.39 -0.02 -2.08 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.05 1.99 6.55 -2.39 -0.02 1.97 16 38 H 0.09 2.63 6.44 -2.39 -0.02 2.61 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.18 5.94 -2.39 -0.01 1.16 16 42 H 0.19 4.85 8.06 -2.91 -0.02 4.83 16 43 H 0.14 5.40 7.91 -2.91 -0.02 5.38 16 Total: -1.00 -69.20 358.36 1.27 -67.92 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.01 Total: 14.14 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 5.30 Total: -32.40 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.92 Total: -81.34 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.58 Total: -14.98 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.55 Total: -1.29 kcal Total: -69.20 1.27 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204497109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.885 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds