Wall clock time and date at job start Tue Mar 31 2020 15:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00301 * 2 1 4 4 C 1.53001 * 109.47163 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46634 * 67.69852 * 4 3 2 6 6 C 1.46902 * 111.00494 * 281.40133 * 5 4 3 7 7 C 1.50691 * 109.47697 * 176.88249 * 6 5 4 8 8 H 1.08006 * 120.00102 * 354.84302 * 7 6 5 9 9 C 1.37877 * 120.00129 * 175.12346 * 7 6 5 10 10 N 1.31513 * 120.00243 * 359.72303 * 9 7 6 11 11 Si 1.86806 * 120.00091 * 179.72241 * 9 7 6 12 12 H 1.48500 * 109.46881 * 89.99792 * 11 9 7 13 13 H 1.48494 * 109.47134 * 209.99870 * 11 9 7 14 14 H 1.48501 * 109.47029 * 329.99903 * 11 9 7 15 15 C 1.46908 * 111.00067 * 157.45175 * 5 4 3 16 16 H 1.08997 * 109.01784 * 175.17475 * 15 5 4 17 17 C 1.52112 * 109.02642 * 56.32694 * 15 5 4 18 18 C 1.53398 * 110.14391 * 178.74870 * 17 15 5 19 19 H 1.08997 * 109.83909 * 313.76320 * 18 17 15 20 20 C 1.52993 * 109.84475 * 192.78855 * 18 17 15 21 21 S 1.82051 * 107.55969 * 73.27145 * 18 17 15 22 22 C 1.77143 * 101.13907 * 315.00741 * 21 18 17 23 23 S 1.75771 * 125.20201 * 191.64980 * 22 21 18 24 24 C 1.75672 * 91.07530 * 180.59520 * 23 22 21 25 25 C 1.32598 * 109.70173 * 359.86703 * 24 23 22 26 26 C 1.35362 * 124.55367 * 11.95130 * 22 21 18 27 27 H 1.08997 * 109.47340 * 59.99769 * 1 2 3 28 28 H 1.09001 * 109.47514 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46948 * 299.99973 * 1 2 3 30 30 H 1.08999 * 109.46603 * 60.00289 * 3 2 1 31 31 H 1.08997 * 109.47283 * 300.00203 * 3 2 1 32 32 H 1.08996 * 109.47529 * 307.69738 * 4 3 2 33 33 H 1.08997 * 109.47057 * 187.69537 * 4 3 2 34 34 H 1.08996 * 109.46755 * 56.87709 * 6 5 4 35 35 H 1.09006 * 109.46935 * 296.88711 * 6 5 4 36 36 H 0.96991 * 120.00352 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.35594 * 298.95936 * 17 15 5 38 38 H 1.09001 * 109.35790 * 58.54494 * 17 15 5 39 39 H 1.09007 * 109.47179 * 301.88679 * 20 18 17 40 40 H 1.08995 * 109.47257 * 61.88573 * 20 18 17 41 41 H 1.08999 * 109.47447 * 181.88916 * 20 18 17 42 42 H 1.08003 * 125.14540 * 179.83249 * 24 23 22 43 43 H 1.07997 * 121.98383 * 179.91371 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9825 0.6217 -1.2805 6 6 3.7867 -0.8339 -1.3131 7 6 4.1840 -1.3641 -2.6665 8 1 4.4661 -0.6797 -3.4531 9 6 4.1816 -2.7225 -2.9027 10 7 3.8380 -3.5558 -1.9450 11 14 4.6666 -3.3793 -4.5828 12 1 6.1303 -3.6276 -4.6136 13 1 3.9434 -4.6494 -4.8454 14 1 4.3115 -2.3829 -5.6252 15 6 5.3842 0.9704 -1.5483 16 1 5.7074 0.4676 -2.4597 17 6 6.2444 0.4924 -0.3884 18 6 7.7197 0.8163 -0.6562 19 1 7.9822 0.5304 -1.6748 20 6 8.6054 0.0651 0.3398 21 16 7.9353 2.6114 -0.4434 22 6 6.5283 3.2317 -1.3228 23 16 6.2702 4.9134 -1.7645 24 6 4.7315 4.5151 -2.5127 25 6 4.5041 3.2134 -2.4019 26 6 5.4915 2.4717 -1.7465 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8477 0.5296 0.8140 33 1 3.9780 2.1711 0.1383 34 1 2.7378 -1.0636 -1.1263 35 1 4.4032 -1.3006 -0.5447 36 1 3.8367 -4.5114 -2.1110 37 1 5.9255 0.9905 0.5272 38 1 6.1265 -0.5849 -0.2711 39 1 8.3262 0.3433 1.3561 40 1 8.4717 -1.0084 0.2072 41 1 9.6495 0.3254 0.1658 42 1 4.0705 5.2233 -2.9902 43 1 3.6094 2.7535 -2.7947 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204497112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:10 Heat of formation + Delta-G solvation = -6.142595 kcal Electronic energy + Delta-G solvation = -24715.644181 eV Core-core repulsion = 21399.907164 eV Total energy + Delta-G solvation = -3315.737017 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.21410 -37.36003 -35.93223 -34.20670 -32.52314 -30.48031 -29.31178 -27.56998 -26.47441 -25.58209 -24.66986 -22.25919 -22.14585 -21.53452 -19.83392 -18.67948 -17.70995 -16.41683 -15.93278 -15.86633 -15.71615 -14.98611 -14.96415 -14.38543 -14.03595 -14.00976 -13.86902 -13.54026 -13.00210 -12.68170 -12.61430 -12.40736 -12.14535 -11.89949 -11.72768 -11.60939 -11.25801 -11.17022 -11.08458 -10.97490 -10.82673 -10.78496 -10.54298 -10.50163 -10.27248 -9.89803 -9.74719 -9.35040 -9.23679 -8.92079 -8.40465 -8.05056 -7.24283 -7.15240 -5.99464 -4.00010 1.12791 1.35698 2.04475 2.27577 2.49927 2.97004 3.30506 3.37961 3.41658 4.31278 4.43013 4.74102 4.86962 5.05010 5.12462 5.35212 5.36220 5.50480 5.51545 5.63572 5.70582 5.72103 5.76321 5.78131 5.81422 5.84559 5.98171 6.04124 6.06213 6.15351 6.20631 6.29481 6.36963 6.43126 6.56218 6.67885 6.80961 7.45686 7.48913 7.69307 7.81774 8.21712 8.26474 8.57463 9.08303 9.62955 11.10711 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.005473 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.323450 B = 5114.736531 C = 6298.805110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.072 3.928 4 C 0.054 3.946 5 N -0.518 5.518 6 C 0.186 3.814 7 C -0.510 4.510 8 H 0.059 0.941 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.888 3.112 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.145 3.855 16 H 0.110 0.890 17 C -0.147 4.147 18 C -0.060 4.060 19 H 0.098 0.902 20 C -0.132 4.132 21 S -0.096 6.096 22 C -0.196 4.196 23 S 0.107 5.893 24 C -0.227 4.227 25 C -0.088 4.088 26 C -0.075 4.075 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.064 0.936 35 H -0.005 1.005 36 H 0.260 0.740 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.162 0.838 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 13.044 4.238 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.005 4.005 4 C -0.074 4.074 5 N -0.241 5.241 6 C 0.062 3.938 7 C -0.549 4.549 8 H 0.078 0.922 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.716 3.284 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.199 1.199 15 C 0.034 3.966 16 H 0.127 0.873 17 C -0.187 4.187 18 C -0.191 4.191 19 H 0.117 0.883 20 C -0.191 4.191 21 S 0.143 5.857 22 C -0.425 4.425 23 S 0.368 5.632 24 C -0.365 4.365 25 C -0.120 4.120 26 C -0.095 4.095 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.012 0.988 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.180 0.820 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.079 14.803 4.703 16.059 hybrid contribution -1.353 -2.418 -1.236 3.034 sum 2.726 12.385 3.467 13.147 Atomic orbital electron populations 1.22643 0.82618 1.02288 0.98811 1.88143 1.18335 1.27202 1.94978 1.22510 0.94096 0.85033 0.98879 1.22064 0.93256 0.99303 0.92817 1.62359 1.15681 1.17264 1.28831 1.20047 0.98958 0.78732 0.96097 1.21193 1.44894 0.91272 0.97539 0.92237 1.24915 0.95668 0.97013 0.96592 1.69965 1.48467 1.02642 1.32151 0.86653 0.78380 0.78464 0.84854 1.20868 1.21317 1.19888 1.20364 0.89760 0.87587 0.98926 0.87268 1.22396 0.91814 1.04368 1.00158 1.23551 0.99926 0.91618 1.03975 0.88346 1.21626 0.98468 1.00548 0.98411 1.85197 1.28110 1.05978 1.66431 1.25954 1.03896 1.00135 1.12513 1.83846 1.18093 1.04644 1.56591 1.25281 1.01233 0.99971 1.09981 1.20164 1.00510 0.92219 0.99107 1.19987 0.92442 0.97077 0.99996 0.94559 0.90055 0.95226 0.94487 0.93005 0.94491 0.90996 0.91859 0.98764 0.93077 0.91290 0.88456 0.91680 0.90290 0.92087 0.82041 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.01 8.03 -35.23 -0.28 -7.29 16 3 C 0.07 1.19 6.25 37.16 0.23 1.42 16 4 C 0.05 0.96 3.97 -3.82 -0.02 0.95 16 5 N -0.52 -10.39 3.85 -229.36 -0.88 -11.28 16 6 C 0.19 4.58 4.22 -4.98 -0.02 4.56 16 7 C -0.51 -13.64 8.22 -34.44 -0.28 -13.93 16 8 H 0.06 1.59 6.88 -52.48 -0.36 1.23 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 11 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.14 2.69 2.03 -68.76 -0.14 2.55 16 16 H 0.11 2.32 6.23 -51.93 -0.32 1.99 16 17 C -0.15 -2.51 3.70 -26.98 -0.10 -2.61 16 18 C -0.06 -0.89 3.16 -26.53 -0.08 -0.97 16 19 H 0.10 1.51 8.10 -51.93 -0.42 1.09 16 20 C -0.13 -1.63 9.23 37.15 0.34 -1.29 16 21 S -0.10 -1.40 21.89 -107.50 -2.35 -3.76 16 22 C -0.20 -3.08 6.71 29.71 0.20 -2.88 16 23 S 0.11 1.44 23.32 -107.50 -2.51 -1.06 16 24 C -0.23 -3.01 11.18 28.83 0.32 -2.68 16 25 C -0.09 -1.37 9.24 -40.90 -0.38 -1.75 16 26 C -0.07 -1.25 4.24 -104.51 -0.44 -1.69 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.70 7.42 -51.93 -0.39 0.31 16 33 H 0.07 1.19 6.67 -51.93 -0.35 0.85 16 34 H 0.06 1.72 5.52 -51.93 -0.29 1.44 16 35 H -0.01 -0.14 6.48 -51.93 -0.34 -0.48 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.07 1.16 6.72 -51.93 -0.35 0.81 16 38 H 0.10 1.89 6.43 -51.93 -0.33 1.55 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 43 H 0.15 2.41 7.91 -52.49 -0.42 1.99 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -28.84 359.73 -10.74 -39.58 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.50 Total: 2.49 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 0.65 Total: -15.19 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.15 Total: -36.39 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.28 Total: -7.29 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -4.86 Total: -4.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.84 -10.74 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204497112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.442 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds