Wall clock time and date at job start Tue Mar 31 2020 15:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00301 * 2 1 4 4 C 1.53001 * 109.47163 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46634 * 67.69852 * 4 3 2 6 6 C 1.46902 * 111.00494 * 281.40133 * 5 4 3 7 7 C 1.50691 * 109.47697 * 176.88249 * 6 5 4 8 8 H 1.08006 * 120.00102 * 354.84302 * 7 6 5 9 9 C 1.37877 * 120.00129 * 175.12346 * 7 6 5 10 10 N 1.31513 * 120.00243 * 359.72303 * 9 7 6 11 11 Si 1.86806 * 120.00091 * 179.72241 * 9 7 6 12 12 H 1.48500 * 109.46881 * 89.99792 * 11 9 7 13 13 H 1.48494 * 109.47134 * 209.99870 * 11 9 7 14 14 H 1.48501 * 109.47029 * 329.99903 * 11 9 7 15 15 C 1.46908 * 111.00067 * 157.45175 * 5 4 3 16 16 H 1.08997 * 109.01784 * 175.17475 * 15 5 4 17 17 C 1.52112 * 109.02642 * 56.32694 * 15 5 4 18 18 C 1.53398 * 110.14391 * 178.74870 * 17 15 5 19 19 H 1.08997 * 109.83909 * 313.76320 * 18 17 15 20 20 C 1.52993 * 109.84475 * 192.78855 * 18 17 15 21 21 S 1.82051 * 107.55969 * 73.27145 * 18 17 15 22 22 C 1.77143 * 101.13907 * 315.00741 * 21 18 17 23 23 S 1.75771 * 125.20201 * 191.64980 * 22 21 18 24 24 C 1.75672 * 91.07530 * 180.59520 * 23 22 21 25 25 C 1.32598 * 109.70173 * 359.86703 * 24 23 22 26 26 C 1.35362 * 124.55367 * 11.95130 * 22 21 18 27 27 H 1.08997 * 109.47340 * 59.99769 * 1 2 3 28 28 H 1.09001 * 109.47514 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46948 * 299.99973 * 1 2 3 30 30 H 1.08999 * 109.46603 * 60.00289 * 3 2 1 31 31 H 1.08997 * 109.47283 * 300.00203 * 3 2 1 32 32 H 1.08996 * 109.47529 * 307.69738 * 4 3 2 33 33 H 1.08997 * 109.47057 * 187.69537 * 4 3 2 34 34 H 1.08996 * 109.46755 * 56.87709 * 6 5 4 35 35 H 1.09006 * 109.46935 * 296.88711 * 6 5 4 36 36 H 0.96991 * 120.00352 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.35594 * 298.95936 * 17 15 5 38 38 H 1.09001 * 109.35790 * 58.54494 * 17 15 5 39 39 H 1.09007 * 109.47179 * 301.88679 * 20 18 17 40 40 H 1.08995 * 109.47257 * 61.88573 * 20 18 17 41 41 H 1.08999 * 109.47447 * 181.88916 * 20 18 17 42 42 H 1.08003 * 125.14540 * 179.83249 * 24 23 22 43 43 H 1.07997 * 121.98383 * 179.91371 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9825 0.6217 -1.2805 6 6 3.7867 -0.8339 -1.3131 7 6 4.1840 -1.3641 -2.6665 8 1 4.4661 -0.6797 -3.4531 9 6 4.1816 -2.7225 -2.9027 10 7 3.8380 -3.5558 -1.9450 11 14 4.6666 -3.3793 -4.5828 12 1 6.1303 -3.6276 -4.6136 13 1 3.9434 -4.6494 -4.8454 14 1 4.3115 -2.3829 -5.6252 15 6 5.3842 0.9704 -1.5483 16 1 5.7074 0.4676 -2.4597 17 6 6.2444 0.4924 -0.3884 18 6 7.7197 0.8163 -0.6562 19 1 7.9822 0.5304 -1.6748 20 6 8.6054 0.0651 0.3398 21 16 7.9353 2.6114 -0.4434 22 6 6.5283 3.2317 -1.3228 23 16 6.2702 4.9134 -1.7645 24 6 4.7315 4.5151 -2.5127 25 6 4.5041 3.2134 -2.4019 26 6 5.4915 2.4717 -1.7465 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8477 0.5296 0.8140 33 1 3.9780 2.1711 0.1383 34 1 2.7378 -1.0636 -1.1263 35 1 4.4032 -1.3006 -0.5447 36 1 3.8367 -4.5114 -2.1110 37 1 5.9255 0.9905 0.5272 38 1 6.1265 -0.5849 -0.2711 39 1 8.3262 0.3433 1.3561 40 1 8.4717 -1.0084 0.2072 41 1 9.6495 0.3254 0.1658 42 1 4.0705 5.2233 -2.9902 43 1 3.6094 2.7535 -2.7947 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204497112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:10 Heat of formation + Delta-G solvation = -22.219271 kcal Electronic energy + Delta-G solvation = -24716.341318 eV Core-core repulsion = 21399.907164 eV Total energy + Delta-G solvation = -3316.434154 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64110 -38.69174 -37.30111 -35.60435 -34.53586 -31.73613 -30.83791 -29.11344 -27.90216 -26.89744 -26.21463 -23.94419 -23.40255 -22.91484 -21.28276 -19.95452 -19.04088 -18.22210 -17.45554 -17.23780 -17.06460 -16.61175 -16.24138 -15.97510 -15.42421 -15.35254 -15.19587 -14.78466 -14.42726 -14.29922 -13.94451 -13.78549 -13.55804 -13.32675 -13.08588 -12.94315 -12.74804 -12.63483 -12.51574 -12.42028 -12.38399 -12.32392 -12.09418 -11.96874 -11.78184 -11.57577 -11.09768 -11.03110 -10.60748 -10.52069 -10.33218 -9.19744 -8.92177 -8.34010 -8.12979 -6.20081 -0.05415 0.20417 0.86102 1.14904 1.27657 1.39112 1.40547 1.50960 1.74239 2.41977 3.02872 3.21084 3.25386 3.59501 3.74446 3.88457 4.13672 4.22691 4.32351 4.36545 4.41401 4.49781 4.53992 4.56291 4.58975 4.63710 4.71444 4.77467 4.83320 4.88506 4.90399 4.98511 5.10397 5.12281 5.16343 5.36356 5.44044 5.56391 5.67738 5.71991 6.18254 6.36620 6.49775 6.70965 6.97644 7.47368 8.97569 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.005473 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.323450 B = 5114.736531 C = 6298.805110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.409 6.409 3 C 0.073 3.927 4 C 0.060 3.940 5 N -0.517 5.517 6 C 0.208 3.792 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.010 3.990 10 N -0.928 5.928 11 Si 0.952 3.048 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.149 3.851 16 H 0.075 0.925 17 C -0.135 4.135 18 C -0.061 4.061 19 H 0.089 0.911 20 C -0.127 4.127 21 S -0.073 6.073 22 C -0.218 4.218 23 S 0.158 5.842 24 C -0.207 4.207 25 C -0.113 4.113 26 C -0.089 4.089 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.088 0.912 34 H 0.039 0.961 35 H -0.037 1.037 36 H 0.261 0.739 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.195 0.805 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 15.628 3.896 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.329 6.329 3 C -0.003 4.003 4 C -0.069 4.069 5 N -0.240 5.240 6 C 0.082 3.918 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.189 4.189 10 N -0.569 5.569 11 Si 0.778 3.222 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.193 1.193 15 C 0.038 3.962 16 H 0.093 0.907 17 C -0.176 4.176 18 C -0.192 4.192 19 H 0.108 0.892 20 C -0.186 4.186 21 S 0.165 5.835 22 C -0.447 4.447 23 S 0.419 5.581 24 C -0.345 4.345 25 C -0.144 4.144 26 C -0.109 4.109 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.106 0.894 34 H 0.056 0.944 35 H -0.019 1.019 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.212 0.788 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.610 17.414 4.359 18.534 hybrid contribution -1.525 -3.093 -1.108 3.622 sum 3.085 14.321 3.252 15.006 Atomic orbital electron populations 1.22790 0.80614 1.02724 1.00518 1.88078 1.20729 1.28786 1.95303 1.22571 0.92819 0.84489 1.00454 1.22092 0.94637 0.99272 0.90879 1.62238 1.17122 1.14209 1.30421 1.19580 0.96562 0.81445 0.94209 1.21456 1.44309 0.91529 0.98236 0.92652 1.25698 0.95699 0.97330 1.00138 1.70093 1.49759 1.02864 1.34171 0.85641 0.78286 0.77759 0.80500 1.20062 1.20977 1.19326 1.20178 0.88907 0.89341 0.97797 0.90711 1.22200 0.93594 1.02114 0.99650 1.23518 0.98544 0.92853 1.04278 0.89238 1.21617 0.99036 0.99951 0.97973 1.85048 1.27529 1.04753 1.66174 1.26238 1.03889 1.01960 1.12649 1.83701 1.17313 1.01893 1.55167 1.25658 1.01319 0.99486 1.08038 1.20063 1.00376 0.93216 1.00743 1.19738 0.93822 0.95639 1.01719 0.93777 0.90392 0.92440 0.91385 0.92685 0.96139 0.89400 0.94351 1.01888 0.93043 0.91069 0.91695 0.91023 0.90734 0.90092 0.78814 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.41 -15.90 8.03 -148.98 -1.20 -17.10 16 3 C 0.07 2.39 6.25 71.98 0.45 2.84 16 4 C 0.06 2.14 3.97 86.30 0.34 2.49 16 5 N -0.52 -21.65 3.85 -879.56 -3.39 -25.04 16 6 C 0.21 10.86 4.22 85.55 0.36 11.22 16 7 C -0.52 -28.85 8.22 25.60 0.21 -28.64 16 8 H 0.06 3.08 6.88 -2.91 -0.02 3.06 16 9 C 0.01 0.54 5.46 84.65 0.46 1.00 16 10 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 11 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 C 0.15 5.75 2.03 44.23 0.09 5.84 16 16 H 0.08 3.37 6.23 -2.39 -0.01 3.36 16 17 C -0.14 -4.83 3.70 30.43 0.11 -4.72 16 18 C -0.06 -1.83 3.16 30.73 0.10 -1.73 16 19 H 0.09 2.82 8.10 -2.39 -0.02 2.80 16 20 C -0.13 -3.10 9.23 71.98 0.66 -2.43 16 21 S -0.07 -2.05 21.89 -56.49 -1.24 -3.29 16 22 C -0.22 -6.52 6.71 67.16 0.45 -6.07 16 23 S 0.16 3.74 23.32 -56.49 -1.32 2.42 16 24 C -0.21 -4.85 11.18 66.66 0.75 -4.10 16 25 C -0.11 -3.37 9.24 21.49 0.20 -3.17 16 26 C -0.09 -2.93 4.24 -19.79 -0.08 -3.02 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.02 0.80 7.42 -2.39 -0.02 0.78 16 33 H 0.09 2.87 6.67 -2.39 -0.02 2.85 16 34 H 0.04 2.22 5.52 -2.39 -0.01 2.20 16 35 H -0.04 -2.10 6.48 -2.38 -0.02 -2.12 16 36 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.07 2.47 6.72 -2.38 -0.02 2.45 16 38 H 0.06 2.73 6.43 -2.39 -0.02 2.71 16 39 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.14 4.41 7.91 -2.91 -0.02 4.39 16 Total: -1.00 -64.36 359.73 1.52 -62.84 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.00 Total: 17.48 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 5.35 Total: -28.38 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -3.11 Total: -80.47 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -1.20 Total: -17.10 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.55 Total: -0.87 kcal Total: -64.36 1.52 -62.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204497112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.618 kcal (2) G-P(sol) polarization free energy of solvation -64.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds