Wall clock time and date at job start Tue Mar 31 2020 15:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 H 1.08999 * 109.47456 * 54.99697 * 7 6 4 9 9 C 1.50695 * 109.47310 * 174.99936 * 7 6 4 10 10 H 1.08005 * 120.00302 * 239.99738 * 9 7 6 11 11 C 1.37884 * 120.00111 * 59.99751 * 9 7 6 12 12 N 1.31510 * 119.99863 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00101 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.47015 * 60.00321 * 13 11 9 15 15 H 1.48497 * 109.47272 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47349 * 300.00276 * 13 11 9 17 17 O 1.42906 * 109.46996 * 294.99650 * 7 6 4 18 18 C 1.42896 * 113.99694 * 149.99832 * 17 7 6 19 19 C 1.50705 * 109.46971 * 179.97438 * 18 17 7 20 20 N 1.29924 * 125.36747 * 90.00193 * 19 18 17 21 21 C 1.36095 * 108.47416 * 179.97438 * 20 19 18 22 22 C 1.47277 * 126.46103 * 180.02562 * 21 20 19 23 23 O 1.21531 * 120.00225 * 180.02562 * 22 21 20 24 24 O 1.34777 * 119.99587 * 0.02562 * 22 21 20 25 25 C 1.45198 * 116.99659 * 180.02562 * 24 22 21 26 26 C 1.36172 * 107.08442 * 359.97438 * 21 20 19 27 27 O 1.34051 * 125.37292 * 269.69829 * 19 18 17 28 28 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 29 29 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 34 34 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 35 35 H 0.96998 * 120.00236 * 180.02562 * 12 11 9 36 36 H 1.08995 * 109.47807 * 299.99993 * 18 17 7 37 37 H 1.09000 * 109.47500 * 60.00530 * 18 17 7 38 38 H 1.09001 * 109.47698 * 300.00278 * 25 24 22 39 39 H 1.09001 * 109.47379 * 60.00062 * 25 24 22 40 40 H 1.09003 * 109.47218 * 179.97438 * 25 24 22 41 41 H 1.08000 * 126.53427 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 1 5.7835 2.2522 -0.8318 9 6 6.0247 4.2448 -0.1070 10 1 6.6624 4.4958 -0.9418 11 6 5.7377 5.1940 0.8510 12 7 4.9616 4.8883 1.8678 13 14 6.4525 6.9137 0.7056 14 1 5.9940 7.5346 -0.5632 15 1 5.9966 7.7380 1.8536 16 1 7.9354 6.8356 0.7109 17 8 5.8902 2.2602 1.2315 18 6 7.1138 1.5316 1.1128 19 6 7.4833 0.9486 2.4524 20 7 7.1223 -0.2206 2.8892 21 6 7.6457 -0.3967 4.1331 22 6 7.4835 -1.5829 4.9909 23 8 8.0051 -1.6152 6.0881 24 8 6.7567 -2.6325 4.5591 25 6 6.6390 -3.7670 5.4575 26 6 8.3485 0.7299 4.4346 27 8 8.2410 1.5521 3.3790 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5878 3.4722 -0.8839 34 1 3.5816 3.4669 0.8960 35 1 4.7594 5.5562 2.5415 36 1 6.9889 0.7271 0.3880 37 1 7.9051 2.2024 0.7782 38 1 7.6307 -4.1656 5.6713 39 1 6.1680 -3.4471 6.3870 40 1 6.0296 -4.5398 4.9890 41 1 8.8922 0.9235 5.3475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224251445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:10 Heat of formation + Delta-G solvation = -188.613385 kcal Electronic energy + Delta-G solvation = -28058.983811 eV Core-core repulsion = 23713.995430 eV Total energy + Delta-G solvation = -4344.988381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.20715 -40.19946 -39.66179 -37.03864 -36.49757 -35.69373 -34.66122 -33.15332 -31.52406 -31.08241 -29.86064 -28.04304 -26.38157 -25.98158 -24.22799 -23.13512 -21.64775 -21.44410 -20.51241 -19.80124 -18.22456 -17.22092 -17.09050 -16.87776 -16.47370 -16.25914 -16.07042 -15.99645 -15.60030 -15.02245 -14.52169 -14.43603 -14.03180 -13.69194 -13.58362 -13.39248 -13.28492 -12.83390 -12.57552 -12.22737 -12.17026 -11.76037 -11.50325 -11.33621 -11.15325 -11.08301 -10.99509 -10.86936 -10.85758 -10.81198 -10.62271 -10.46053 -10.04520 -10.03470 -9.56659 -9.35714 -8.90102 -8.68609 -8.14524 -6.16271 -4.36641 1.04433 2.03438 2.50937 2.88225 3.13134 3.15090 3.22419 3.29147 3.30409 3.42947 4.06845 4.28731 4.76175 4.87906 4.99844 5.06014 5.07574 5.15344 5.22005 5.38534 5.40518 5.46415 5.56786 5.62387 5.77515 5.96340 6.00142 6.01557 6.10100 6.14261 6.18226 6.34176 6.45294 6.59796 6.83906 7.10204 7.40761 7.53913 7.70309 7.90443 8.00764 8.41600 8.63306 8.82220 9.40407 10.85157 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008143 B = 0.004509 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.665073 B = 6208.158449 C = 9052.015242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.369 6.369 4 C 0.456 3.544 5 O -0.511 6.511 6 C -0.101 4.101 7 C 0.234 3.766 8 H 0.022 0.978 9 C -0.565 4.565 10 H 0.064 0.936 11 C 0.087 3.913 12 N -0.856 5.856 13 Si 0.892 3.108 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.275 1.275 17 O -0.357 6.357 18 C 0.164 3.836 19 C 0.236 3.764 20 N -0.437 5.437 21 C -0.071 4.071 22 C 0.562 3.438 23 O -0.510 6.510 24 O -0.335 6.335 25 C 0.035 3.965 26 C 0.024 3.976 27 O -0.180 6.180 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.266 0.734 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -10.108 1.941 10.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.287 6.287 4 C 0.300 3.700 5 O -0.399 6.399 6 C -0.138 4.138 7 C 0.178 3.822 8 H 0.040 0.960 9 C -0.602 4.602 10 H 0.082 0.918 11 C -0.120 4.120 12 N -0.490 5.490 13 Si 0.719 3.281 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.200 1.200 17 O -0.276 6.276 18 C 0.086 3.914 19 C 0.026 3.974 20 N -0.167 5.167 21 C -0.189 4.189 22 C 0.407 3.593 23 O -0.400 6.400 24 O -0.250 6.250 25 C -0.058 4.058 26 C -0.052 4.052 27 O -0.065 6.065 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.155 0.845 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.785 -10.794 2.250 11.054 hybrid contribution 0.859 1.046 0.572 1.470 sum 0.075 -9.748 2.822 10.148 Atomic orbital electron populations 1.21773 0.93462 1.02239 1.03236 1.22829 0.94709 0.81915 1.02032 1.86574 1.26381 1.30872 1.84854 1.24927 0.79394 0.94391 0.71250 1.90588 1.60124 1.43559 1.45605 1.21857 0.97308 0.87927 1.06752 1.19413 0.88366 0.91908 0.82513 0.95993 1.21450 1.32862 0.95672 1.10181 0.91766 1.25025 0.93858 0.98656 0.94468 1.69875 1.34122 1.34271 1.10781 0.86671 0.79794 0.83853 0.77764 1.19958 1.21113 1.20012 1.88098 1.35292 1.68169 1.36037 1.20338 0.91846 0.95674 0.83543 1.26588 0.90451 0.86890 0.93455 1.70959 1.20499 1.17144 1.08117 1.20546 1.07342 0.95956 0.95100 1.19459 0.74961 0.81490 0.83398 1.90859 1.46975 1.81285 1.20838 1.86712 1.65501 1.25815 1.46958 1.23324 1.02624 0.86030 0.93855 1.25216 0.99850 0.88276 0.91838 1.84512 1.55465 1.43390 1.23159 0.91779 0.90922 0.91672 0.91941 0.91729 0.88494 0.84515 0.92429 0.90109 0.90844 0.91824 0.91781 0.87847 0.75377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.29 37.15 0.38 -1.32 16 2 C 0.06 0.91 6.19 37.15 0.23 1.14 16 3 O -0.37 -6.96 10.22 -39.26 -0.40 -7.36 16 4 C 0.46 9.76 7.84 36.00 0.28 10.04 16 5 O -0.51 -11.85 15.17 -24.06 -0.36 -12.21 16 6 C -0.10 -2.24 5.22 -27.89 -0.15 -2.39 16 7 C 0.23 5.54 1.82 -27.89 -0.05 5.48 16 8 H 0.02 0.50 7.60 -51.93 -0.39 0.11 16 9 C -0.56 -14.08 8.90 -34.44 -0.31 -14.39 16 10 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 11 C 0.09 2.20 5.24 -17.82 -0.09 2.11 16 12 N -0.86 -22.56 10.93 55.43 0.61 -21.95 16 13 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 14 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 O -0.36 -8.79 8.59 -49.67 -0.43 -9.22 16 18 C 0.16 3.41 6.36 36.01 0.23 3.64 16 19 C 0.24 4.75 7.93 -13.08 -0.10 4.65 16 20 N -0.44 -8.90 11.36 -7.67 -0.09 -8.99 16 21 C -0.07 -1.26 7.04 -83.04 -0.58 -1.85 16 22 C 0.56 9.27 7.96 34.41 0.27 9.55 16 23 O -0.51 -8.43 16.68 -19.29 -0.32 -8.76 16 24 O -0.33 -5.19 10.58 -40.70 -0.43 -5.62 16 25 C 0.04 0.37 10.57 101.05 1.07 1.44 16 26 C 0.02 0.36 11.95 29.99 0.36 0.72 16 27 O -0.18 -3.30 10.72 6.58 0.07 -3.23 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 32 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 33 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 34 H 0.14 3.36 6.22 -51.93 -0.32 3.04 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.08 1.59 8.08 -51.93 -0.42 1.17 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.23 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -31.75 369.89 -4.60 -36.34 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.33 Total: 2.02 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 1.54 Total: 18.83 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.52 Total: -30.94 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -1.87 Total: -46.39 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.75 -4.60 -36.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224251445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.269 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds