Wall clock time and date at job start Tue Mar 31 2020 15:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 H 1.08999 * 109.47456 * 54.99697 * 7 6 4 9 9 C 1.50695 * 109.47310 * 174.99936 * 7 6 4 10 10 H 1.08005 * 120.00302 * 239.99738 * 9 7 6 11 11 C 1.37884 * 120.00111 * 59.99751 * 9 7 6 12 12 N 1.31510 * 119.99863 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00101 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.47015 * 60.00321 * 13 11 9 15 15 H 1.48497 * 109.47272 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47349 * 300.00276 * 13 11 9 17 17 O 1.42906 * 109.46996 * 294.99650 * 7 6 4 18 18 C 1.42896 * 113.99694 * 149.99832 * 17 7 6 19 19 C 1.50705 * 109.46971 * 179.97438 * 18 17 7 20 20 N 1.29924 * 125.36747 * 90.00193 * 19 18 17 21 21 C 1.36095 * 108.47416 * 179.97438 * 20 19 18 22 22 C 1.47277 * 126.46103 * 180.02562 * 21 20 19 23 23 O 1.21531 * 120.00225 * 180.02562 * 22 21 20 24 24 O 1.34777 * 119.99587 * 0.02562 * 22 21 20 25 25 C 1.45198 * 116.99659 * 180.02562 * 24 22 21 26 26 C 1.36172 * 107.08442 * 359.97438 * 21 20 19 27 27 O 1.34051 * 125.37292 * 269.69829 * 19 18 17 28 28 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 29 29 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 34 34 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 35 35 H 0.96998 * 120.00236 * 180.02562 * 12 11 9 36 36 H 1.08995 * 109.47807 * 299.99993 * 18 17 7 37 37 H 1.09000 * 109.47500 * 60.00530 * 18 17 7 38 38 H 1.09001 * 109.47698 * 300.00278 * 25 24 22 39 39 H 1.09001 * 109.47379 * 60.00062 * 25 24 22 40 40 H 1.09003 * 109.47218 * 179.97438 * 25 24 22 41 41 H 1.08000 * 126.53427 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 1 5.7835 2.2522 -0.8318 9 6 6.0247 4.2448 -0.1070 10 1 6.6624 4.4958 -0.9418 11 6 5.7377 5.1940 0.8510 12 7 4.9616 4.8883 1.8678 13 14 6.4525 6.9137 0.7056 14 1 5.9940 7.5346 -0.5632 15 1 5.9966 7.7380 1.8536 16 1 7.9354 6.8356 0.7109 17 8 5.8902 2.2602 1.2315 18 6 7.1138 1.5316 1.1128 19 6 7.4833 0.9486 2.4524 20 7 7.1223 -0.2206 2.8892 21 6 7.6457 -0.3967 4.1331 22 6 7.4835 -1.5829 4.9909 23 8 8.0051 -1.6152 6.0881 24 8 6.7567 -2.6325 4.5591 25 6 6.6390 -3.7670 5.4575 26 6 8.3485 0.7299 4.4346 27 8 8.2410 1.5521 3.3790 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5878 3.4722 -0.8839 34 1 3.5816 3.4669 0.8960 35 1 4.7594 5.5562 2.5415 36 1 6.9889 0.7271 0.3880 37 1 7.9051 2.2024 0.7782 38 1 7.6307 -4.1656 5.6713 39 1 6.1680 -3.4471 6.3870 40 1 6.0296 -4.5398 4.9890 41 1 8.8922 0.9235 5.3475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224251445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:09 Heat of formation + Delta-G solvation = -209.833169 kcal Electronic energy + Delta-G solvation = -28059.903970 eV Core-core repulsion = 23713.995430 eV Total energy + Delta-G solvation = -4345.908540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.61962 -41.39377 -41.29991 -38.77232 -37.67657 -37.32042 -36.10879 -34.98534 -32.92462 -32.49234 -31.46699 -29.03084 -28.06780 -27.66327 -25.44916 -24.53332 -23.21562 -22.87591 -21.87267 -21.47404 -19.52359 -18.97001 -18.47024 -18.28670 -17.98159 -17.66050 -17.49595 -17.28319 -17.22287 -16.67213 -16.25217 -15.93923 -15.61503 -15.05782 -14.96850 -14.60648 -14.43254 -14.27628 -13.95465 -13.59829 -13.27216 -13.17914 -13.01524 -12.86786 -12.73194 -12.59212 -12.53351 -12.43768 -12.40250 -12.12208 -11.90694 -11.89933 -11.81672 -11.44208 -11.32164 -11.14496 -10.60505 -10.28401 -9.96888 -8.06757 -6.33250 -0.22688 0.57562 1.34125 1.42733 1.49490 1.51480 1.56418 1.58061 1.81610 1.93855 2.46343 2.67976 3.15568 3.51565 3.61778 3.78409 4.03743 4.05008 4.18586 4.21893 4.28555 4.29681 4.38169 4.39286 4.44964 4.59855 4.63700 4.67020 4.73949 4.80574 4.92100 4.95538 5.06667 5.07878 5.17283 5.46872 5.62333 5.78670 6.11949 6.24254 6.56835 6.57308 6.93092 7.00850 7.47377 8.93704 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008143 B = 0.004509 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.665073 B = 6208.158449 C = 9052.015242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 O -0.370 6.370 4 C 0.461 3.539 5 O -0.533 6.533 6 C -0.097 4.097 7 C 0.231 3.769 8 H 0.023 0.977 9 C -0.576 4.576 10 H 0.066 0.934 11 C 0.049 3.951 12 N -0.882 5.882 13 Si 0.950 3.050 14 H -0.266 1.266 15 H -0.288 1.288 16 H -0.274 1.274 17 O -0.383 6.383 18 C 0.165 3.835 19 C 0.214 3.786 20 N -0.456 5.456 21 C -0.100 4.100 22 C 0.565 3.435 23 O -0.515 6.515 24 O -0.354 6.354 25 C 0.027 3.973 26 C 0.054 3.946 27 O -0.188 6.188 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.263 0.737 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 -10.465 2.363 10.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 O -0.288 6.288 4 C 0.307 3.693 5 O -0.423 6.423 6 C -0.135 4.135 7 C 0.175 3.825 8 H 0.041 0.959 9 C -0.613 4.613 10 H 0.084 0.916 11 C -0.156 4.156 12 N -0.518 5.518 13 Si 0.776 3.224 14 H -0.191 1.191 15 H -0.213 1.213 16 H -0.199 1.199 17 O -0.302 6.302 18 C 0.087 3.913 19 C 0.005 3.995 20 N -0.188 5.188 21 C -0.218 4.218 22 C 0.410 3.590 23 O -0.405 6.405 24 O -0.269 6.269 25 C -0.065 4.065 26 C -0.021 4.021 27 O -0.073 6.073 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.149 0.851 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -0.884 -11.162 2.660 11.509 hybrid contribution 0.858 1.000 0.496 1.408 sum -0.026 -10.162 3.156 10.641 Atomic orbital electron populations 1.21800 0.90064 1.04355 1.03619 1.23228 0.97346 0.79892 1.01918 1.86546 1.24714 1.33326 1.84218 1.24643 0.80194 0.93704 0.70808 1.90571 1.60878 1.44069 1.46740 1.21695 0.96804 0.88599 1.06360 1.19433 0.89140 0.91508 0.82416 0.95876 1.21701 1.32921 0.96448 1.10276 0.91601 1.25647 0.94086 1.01752 0.94128 1.70013 1.35269 1.35113 1.11417 0.85749 0.78927 0.79930 0.77797 1.19064 1.21321 1.19937 1.88038 1.36921 1.68709 1.36508 1.20366 0.90798 0.95628 0.84525 1.26316 0.92010 0.87291 0.93916 1.70877 1.20874 1.17390 1.09630 1.20921 1.08568 0.97581 0.94742 1.19287 0.75076 0.81552 0.83098 1.90844 1.47372 1.81478 1.20774 1.86685 1.65065 1.26672 1.48518 1.23707 1.03991 0.85012 0.93812 1.26145 0.97669 0.86593 0.91646 1.84508 1.55202 1.43890 1.23656 0.90922 0.87895 0.91747 0.91316 0.92686 0.86989 0.86706 0.92713 0.89787 0.90021 0.90746 0.91226 0.85089 0.70730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 10.29 71.98 0.74 -2.16 16 2 C 0.05 1.47 6.19 71.98 0.45 1.92 16 3 O -0.37 -13.93 10.22 -51.41 -0.53 -14.46 16 4 C 0.46 20.01 7.84 71.23 0.56 20.57 16 5 O -0.53 -25.13 15.17 27.01 0.41 -24.72 16 6 C -0.10 -4.39 5.22 29.85 0.16 -4.24 16 7 C 0.23 11.13 1.82 29.85 0.05 11.19 16 8 H 0.02 1.08 7.60 -2.39 -0.02 1.06 16 9 C -0.58 -28.91 8.90 25.60 0.23 -28.68 16 10 H 0.07 3.19 7.81 -2.91 -0.02 3.17 16 11 C 0.05 2.45 5.24 84.66 0.44 2.89 16 12 N -0.88 -47.12 10.93 21.45 0.23 -46.89 16 13 Si 0.95 40.02 29.54 68.60 2.03 42.04 16 14 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 15 H -0.29 -12.10 7.11 99.48 0.71 -11.40 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 17 O -0.38 -19.28 8.59 -135.17 -1.16 -20.44 16 18 C 0.16 7.00 6.36 71.24 0.45 7.45 16 19 C 0.21 8.75 7.93 88.39 0.70 9.45 16 20 N -0.46 -18.78 11.36 -293.10 -3.33 -22.11 16 21 C -0.10 -3.49 7.04 40.38 0.28 -3.21 16 22 C 0.56 18.12 7.96 70.20 0.56 18.68 16 23 O -0.51 -16.19 16.68 19.73 0.33 -15.86 16 24 O -0.35 -10.71 10.58 -56.89 -0.60 -11.31 16 25 C 0.03 0.52 10.57 113.37 1.20 1.72 16 26 C 0.05 1.57 11.95 67.34 0.80 2.37 16 27 O -0.19 -6.77 10.72 0.62 0.01 -6.77 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 32 H 0.05 1.73 8.13 -2.38 -0.02 1.71 16 33 H 0.11 4.58 8.14 -2.38 -0.02 4.56 16 34 H 0.12 5.80 6.22 -2.39 -0.01 5.79 16 35 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 36 H 0.08 3.43 8.08 -2.39 -0.02 3.41 16 37 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.28 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -68.84 369.89 5.07 -63.77 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 1.06 Total: 18.77 kcal Atomic # 6 Polarization: 31.34 SS G_CDS: 6.63 Total: 37.96 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -3.10 Total: -69.00 kcal Atomic # 8 Polarization: -92.01 SS G_CDS: -1.54 Total: -93.55 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Total: -68.84 5.07 -63.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224251445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.060 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds