Wall clock time and date at job start Tue Mar 31 2020 15:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34755 * 116.99829 * 2 1 4 4 O 1.21511 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.47406 * 119.99761 * 180.02562 * 3 2 1 6 6 C 1.39822 * 120.17575 * 359.97208 * 5 3 2 7 7 C 1.37939 * 119.91907 * 180.02562 * 6 5 3 8 8 F 1.35097 * 119.86854 * 179.97438 * 7 6 5 9 9 C 1.38759 * 120.27108 * 359.97438 * 7 6 5 10 10 C 1.38196 * 120.35613 * 359.74548 * 9 7 6 11 11 F 1.35103 * 119.96130 * 180.25572 * 10 9 7 12 12 C 1.38901 * 120.07834 * 0.51214 * 10 9 7 13 13 O 1.35738 * 120.14109 * 179.76357 * 12 10 9 14 14 C 1.42895 * 117.00349 * 269.72592 * 13 12 10 15 15 C 1.53514 * 114.17121 * 209.99837 * 14 13 12 16 16 N 1.47483 * 87.92777 * 220.32774 * 15 14 13 17 17 C 1.46903 * 110.99717 * 138.70421 * 16 15 14 18 18 C 1.50694 * 109.47066 * 169.99804 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47480 * 87.83900 * 27.00973 * 16 15 14 27 27 H 1.09002 * 109.47496 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47319 * 300.00255 * 1 2 3 29 29 H 1.09004 * 109.47533 * 60.00400 * 1 2 3 30 30 H 1.08000 * 120.04207 * 359.97438 * 6 5 3 31 31 H 1.08001 * 119.81672 * 179.97438 * 9 7 6 32 32 H 1.09011 * 113.25486 * 342.94920 * 14 13 12 33 33 H 1.09000 * 113.47331 * 105.56452 * 15 14 13 34 34 H 1.08995 * 113.52785 * 335.10042 * 15 14 13 35 35 H 1.09007 * 109.47052 * 49.99488 * 17 16 15 36 36 H 1.09003 * 109.46808 * 290.00181 * 17 16 15 37 37 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 38 38 H 1.09004 * 113.47132 * 87.75237 * 26 16 15 39 39 H 1.09000 * 113.47538 * 218.21976 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5358 1.2778 -0.0006 6 6 4.3009 0.1075 -0.0005 7 6 5.6780 0.1859 -0.0005 8 9 6.4163 -0.9456 0.0000 9 6 6.3083 1.4220 -0.0011 10 6 5.5632 2.5859 -0.0070 11 9 6.1851 3.7852 -0.0127 12 6 4.1756 2.5241 -0.0016 13 8 3.4424 3.6665 -0.0025 14 6 3.0916 4.2133 1.2702 15 6 1.7645 4.9849 1.2786 16 7 2.4100 5.9795 2.1556 17 6 2.0326 7.3456 1.7692 18 6 2.5044 8.3142 2.8229 19 1 3.0315 7.9513 3.6928 20 6 2.2623 9.6637 2.6768 21 7 1.6200 10.1057 1.6176 22 14 2.8465 10.8642 3.9833 23 1 1.7846 11.0374 5.0068 24 1 4.0745 10.3344 4.6287 25 1 3.1449 12.1752 3.3528 26 6 3.6984 5.5955 1.5493 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.8142 -0.8566 0.0003 31 1 7.3870 1.4748 -0.0007 32 1 3.1995 3.5017 2.0889 33 1 0.9507 4.4436 1.7613 34 1 1.4860 5.3823 0.3027 35 1 0.9485 7.4104 1.6754 36 1 2.4953 7.5939 0.8140 37 1 1.4493 11.0550 1.5151 38 1 3.9367 6.1557 0.6451 39 1 4.5235 5.5720 2.2612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227752974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:49 Heat of formation + Delta-G solvation = -129.966427 kcal Electronic energy + Delta-G solvation = -27777.187802 eV Core-core repulsion = 23323.655028 eV Total energy + Delta-G solvation = -4453.532774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.42383 -49.21796 -41.03538 -39.82858 -38.83098 -36.88319 -36.41103 -32.85487 -31.97370 -30.16980 -28.94618 -28.03334 -25.47359 -25.27432 -24.76686 -23.14269 -21.80500 -21.37366 -19.53186 -19.02123 -18.24813 -18.04613 -17.07602 -16.76364 -16.53497 -16.40784 -16.24573 -16.12587 -15.75947 -15.35683 -15.03320 -14.64395 -14.43341 -14.32933 -14.03722 -13.63678 -13.50131 -13.03849 -12.75160 -12.56931 -12.34754 -12.17467 -12.05036 -11.89722 -11.66638 -11.33347 -11.03132 -10.93013 -10.71568 -10.53975 -10.22730 -9.80568 -9.63938 -9.47642 -9.21309 -8.96123 -8.41862 -7.93354 -6.01748 -4.03143 -0.07248 0.38536 2.04346 2.23787 2.83293 3.31172 3.33715 3.39093 3.43564 3.49659 3.81934 4.09944 4.30302 4.43600 4.46541 4.81211 4.82629 4.87075 4.94779 4.96803 5.07330 5.18604 5.24730 5.27603 5.33490 5.37381 5.47654 5.80250 6.03509 6.06875 6.09302 6.26796 6.29963 6.39289 6.57815 7.20315 7.37910 7.47190 7.65640 7.85613 8.10106 8.45158 9.03888 9.60631 11.09381 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.003144 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.705985 B = 8903.447874 C =10301.581957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.503 3.497 4 O -0.459 6.459 5 C -0.096 4.096 6 C -0.097 4.097 7 C 0.108 3.892 8 F -0.126 7.126 9 C -0.146 4.146 10 C 0.106 3.894 11 F -0.110 7.110 12 C 0.129 3.871 13 O -0.298 6.298 14 C 0.065 3.935 15 C 0.014 3.986 16 N -0.464 5.464 17 C 0.162 3.838 18 C -0.505 4.505 19 H 0.063 0.937 20 C 0.054 3.946 21 N -0.899 5.899 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.273 1.273 25 H -0.287 1.287 26 C -0.002 4.002 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.006 0.994 37 H 0.262 0.738 38 H 0.076 0.924 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -25.370 -5.344 26.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.345 3.655 4 O -0.344 6.344 5 C -0.098 4.098 6 C -0.116 4.116 7 C 0.089 3.911 8 F -0.104 7.104 9 C -0.165 4.165 10 C 0.085 3.915 11 F -0.088 7.088 12 C 0.082 3.918 13 O -0.213 6.213 14 C 0.010 3.990 15 C -0.115 4.115 16 N -0.189 5.189 17 C 0.036 3.964 18 C -0.544 4.544 19 H 0.082 0.918 20 C -0.147 4.147 21 N -0.539 5.539 22 Si 0.728 3.272 23 H -0.206 1.206 24 H -0.198 1.198 25 H -0.213 1.213 26 C -0.131 4.131 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.024 0.976 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.742 -24.739 -4.848 25.652 hybrid contribution 0.486 0.895 -0.181 1.035 sum 5.228 -23.844 -5.029 24.923 Atomic orbital electron populations 1.23317 0.75327 1.03802 1.03109 1.86503 1.24003 1.32280 1.84736 1.20546 0.88113 0.82106 0.74743 1.90995 1.65829 1.35288 1.42336 1.19067 0.90733 0.92516 1.07488 1.21362 0.91711 0.99644 0.98889 1.16987 0.88646 0.81917 1.03564 1.91565 1.76643 1.48359 1.93833 1.21245 1.02465 0.89846 1.02984 1.17474 0.89203 0.81556 1.03244 1.91620 1.81932 1.41920 1.93329 1.18749 0.88315 0.87078 0.97675 1.86181 1.69171 1.35335 1.30653 1.24477 0.98514 0.93787 0.82251 1.23950 0.95546 0.94124 0.97850 1.69033 1.02012 1.06563 1.41269 1.20275 0.96933 0.83407 0.95805 1.21092 1.36255 0.90721 1.06316 0.91828 1.25014 0.95406 0.98420 0.95902 1.69963 1.41426 1.14621 1.27879 0.86459 0.79115 0.80139 0.81470 1.20618 1.19820 1.21283 1.24315 0.96470 0.93191 0.99166 0.87913 0.91461 0.91553 0.82130 0.82220 0.88794 0.90002 0.90930 0.95107 0.97571 0.92890 0.90599 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.34 16 2 O -0.36 -3.46 9.81 -40.64 -0.40 -3.86 16 3 C 0.50 6.14 7.89 34.46 0.27 6.41 16 4 O -0.46 -7.00 13.72 -26.61 -0.36 -7.37 16 5 C -0.10 -1.08 5.88 -104.88 -0.62 -1.69 16 6 C -0.10 -0.81 9.59 -39.10 -0.37 -1.19 16 7 C 0.11 0.90 7.28 -39.50 -0.29 0.61 16 8 F -0.13 -1.03 17.26 2.25 0.04 -0.99 16 9 C -0.15 -1.26 9.98 -39.40 -0.39 -1.65 16 10 C 0.11 1.22 7.30 -39.35 -0.29 0.94 16 11 F -0.11 -1.47 17.11 2.25 0.04 -1.43 16 12 C 0.13 1.70 5.63 -38.64 -0.22 1.48 16 13 O -0.30 -4.90 8.39 -40.83 -0.34 -5.25 16 14 C 0.06 1.11 3.91 -26.20 -0.10 1.01 16 15 C 0.01 0.28 6.96 -7.53 -0.05 0.23 16 16 N -0.46 -10.56 6.32 -246.08 -1.55 -12.11 16 17 C 0.16 4.38 4.57 -4.98 -0.02 4.35 16 18 C -0.51 -14.73 9.39 -34.44 -0.32 -15.05 16 19 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 22 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.00 -0.04 7.55 -7.54 -0.06 -0.10 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.16 1.01 7.61 -52.49 -0.40 0.61 16 31 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.09 1.47 7.96 -51.92 -0.41 1.06 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.07 1.49 7.91 -51.93 -0.41 1.08 16 35 H 0.03 0.89 8.08 -51.92 -0.42 0.47 16 36 H 0.01 0.18 7.30 -51.93 -0.38 -0.20 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.08 1.59 7.42 -51.93 -0.39 1.21 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -32.85 349.87 -7.58 -40.43 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -4.49 Total: -3.37 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.49 Total: -1.85 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.82 Total: -38.68 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -1.11 Total: -16.47 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.08 Total: -2.42 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.85 -7.58 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227752974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.538 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds