Wall clock time and date at job start Tue Mar 31 2020 15:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34755 * 116.99829 * 2 1 4 4 O 1.21511 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.47406 * 119.99761 * 180.02562 * 3 2 1 6 6 C 1.39822 * 120.17575 * 359.97208 * 5 3 2 7 7 C 1.37939 * 119.91907 * 180.02562 * 6 5 3 8 8 F 1.35097 * 119.86854 * 179.97438 * 7 6 5 9 9 C 1.38759 * 120.27108 * 359.97438 * 7 6 5 10 10 C 1.38196 * 120.35613 * 359.74548 * 9 7 6 11 11 F 1.35103 * 119.96130 * 180.25572 * 10 9 7 12 12 C 1.38901 * 120.07834 * 0.51214 * 10 9 7 13 13 O 1.35738 * 120.14109 * 179.76357 * 12 10 9 14 14 C 1.42895 * 117.00349 * 269.72592 * 13 12 10 15 15 C 1.53514 * 114.17121 * 209.99837 * 14 13 12 16 16 N 1.47483 * 87.92777 * 220.32774 * 15 14 13 17 17 C 1.46903 * 110.99717 * 138.70421 * 16 15 14 18 18 C 1.50694 * 109.47066 * 169.99804 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47480 * 87.83900 * 27.00973 * 16 15 14 27 27 H 1.09002 * 109.47496 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47319 * 300.00255 * 1 2 3 29 29 H 1.09004 * 109.47533 * 60.00400 * 1 2 3 30 30 H 1.08000 * 120.04207 * 359.97438 * 6 5 3 31 31 H 1.08001 * 119.81672 * 179.97438 * 9 7 6 32 32 H 1.09011 * 113.25486 * 342.94920 * 14 13 12 33 33 H 1.09000 * 113.47331 * 105.56452 * 15 14 13 34 34 H 1.08995 * 113.52785 * 335.10042 * 15 14 13 35 35 H 1.09007 * 109.47052 * 49.99488 * 17 16 15 36 36 H 1.09003 * 109.46808 * 290.00181 * 17 16 15 37 37 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 38 38 H 1.09004 * 113.47132 * 87.75237 * 26 16 15 39 39 H 1.09000 * 113.47538 * 218.21976 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5358 1.2778 -0.0006 6 6 4.3009 0.1075 -0.0005 7 6 5.6780 0.1859 -0.0005 8 9 6.4163 -0.9456 0.0000 9 6 6.3083 1.4220 -0.0011 10 6 5.5632 2.5859 -0.0070 11 9 6.1851 3.7852 -0.0127 12 6 4.1756 2.5241 -0.0016 13 8 3.4424 3.6665 -0.0025 14 6 3.0916 4.2133 1.2702 15 6 1.7645 4.9849 1.2786 16 7 2.4100 5.9795 2.1556 17 6 2.0326 7.3456 1.7692 18 6 2.5044 8.3142 2.8229 19 1 3.0315 7.9513 3.6928 20 6 2.2623 9.6637 2.6768 21 7 1.6200 10.1057 1.6176 22 14 2.8465 10.8642 3.9833 23 1 1.7846 11.0374 5.0068 24 1 4.0745 10.3344 4.6287 25 1 3.1449 12.1752 3.3528 26 6 3.6984 5.5955 1.5493 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.8142 -0.8566 0.0003 31 1 7.3870 1.4748 -0.0007 32 1 3.1995 3.5017 2.0889 33 1 0.9507 4.4436 1.7613 34 1 1.4860 5.3823 0.3027 35 1 0.9485 7.4104 1.6754 36 1 2.4953 7.5939 0.8140 37 1 1.4493 11.0550 1.5151 38 1 3.9367 6.1557 0.6451 39 1 4.5235 5.5720 2.2612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227752974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:48 Heat of formation + Delta-G solvation = -151.570797 kcal Electronic energy + Delta-G solvation = -27778.124638 eV Core-core repulsion = 23323.655028 eV Total energy + Delta-G solvation = -4454.469609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.16445 -50.10854 -42.02363 -41.14126 -39.92800 -37.99873 -37.38111 -35.05225 -32.78444 -31.55935 -30.42352 -28.71521 -27.30142 -26.89269 -25.69268 -24.24519 -23.40000 -22.33896 -21.15137 -19.89489 -19.37804 -18.89102 -18.54372 -17.93256 -17.67748 -17.36324 -17.21818 -16.94671 -16.92399 -16.47078 -16.36608 -16.19353 -15.83347 -15.55149 -15.04137 -14.62135 -14.54278 -14.43808 -14.19856 -13.89024 -13.74782 -13.41046 -13.20804 -13.06813 -12.97210 -12.76777 -12.72760 -12.37060 -12.20913 -11.80600 -11.77433 -11.69287 -11.28960 -10.86617 -10.64661 -10.42836 -9.95129 -9.73016 -8.25451 -6.36919 -0.90082 -0.43587 1.19333 1.38913 1.41482 1.44686 1.52987 1.90199 2.35875 2.40282 2.65133 2.96611 3.06395 3.22895 3.29053 3.36723 3.61197 3.69139 3.79568 3.91396 4.22245 4.34464 4.37524 4.39012 4.41283 4.47848 4.55671 4.59327 4.63017 4.72328 4.77555 4.79802 4.81037 5.00363 5.22714 5.32119 5.50133 5.68777 5.99401 6.19802 6.32587 6.59776 6.76541 7.32614 8.86290 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.003144 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.705985 B = 8903.447874 C =10301.581957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.349 6.349 3 C 0.504 3.496 4 O -0.500 6.500 5 C -0.101 4.101 6 C -0.075 4.075 7 C 0.123 3.877 8 F -0.118 7.118 9 C -0.126 4.126 10 C 0.093 3.907 11 F -0.126 7.126 12 C 0.096 3.904 13 O -0.315 6.315 14 C 0.096 3.904 15 C 0.014 3.986 16 N -0.476 5.476 17 C 0.177 3.823 18 C -0.528 4.528 19 H 0.062 0.938 20 C 0.000 4.000 21 N -0.935 5.935 22 Si 0.976 3.024 23 H -0.270 1.270 24 H -0.264 1.264 25 H -0.279 1.279 26 C -0.005 4.005 27 H 0.139 0.861 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.188 0.812 31 H 0.187 0.813 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.003 0.997 36 H -0.021 1.021 37 H 0.266 0.734 38 H 0.057 0.943 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 -27.902 -4.412 29.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.266 6.266 3 C 0.348 3.652 4 O -0.388 6.388 5 C -0.102 4.102 6 C -0.094 4.094 7 C 0.104 3.896 8 F -0.096 7.096 9 C -0.145 4.145 10 C 0.073 3.927 11 F -0.104 7.104 12 C 0.050 3.950 13 O -0.230 6.230 14 C 0.040 3.960 15 C -0.115 4.115 16 N -0.200 5.200 17 C 0.050 3.950 18 C -0.566 4.566 19 H 0.081 0.919 20 C -0.198 4.198 21 N -0.575 5.575 22 Si 0.800 3.200 23 H -0.196 1.196 24 H -0.188 1.188 25 H -0.205 1.205 26 C -0.134 4.134 27 H 0.157 0.843 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.205 0.795 31 H 0.205 0.795 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.021 0.979 36 H -0.003 1.003 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.260 -27.325 -3.924 28.307 hybrid contribution 0.037 1.456 -0.560 1.560 sum 6.297 -25.870 -4.484 27.000 Atomic orbital electron populations 1.23602 0.73937 1.06030 1.02602 1.86501 1.25301 1.30750 1.84031 1.20784 0.88522 0.82226 0.73689 1.90984 1.66712 1.36654 1.44412 1.19007 0.90472 0.92624 1.08147 1.21566 0.91675 0.99631 0.96524 1.16921 0.88533 0.81889 1.02298 1.91602 1.76455 1.47935 1.93605 1.21442 1.03644 0.88754 1.00667 1.17582 0.88754 0.81923 1.04464 1.91581 1.82080 1.43082 1.93656 1.19023 0.88869 0.86579 1.00515 1.86139 1.69944 1.37093 1.29848 1.24009 0.95384 0.92928 0.83659 1.23896 0.97358 0.93781 0.96466 1.68912 1.04150 1.04664 1.42259 1.19928 0.94763 0.85971 0.94295 1.21400 1.36791 0.91748 1.06705 0.91938 1.26010 0.95154 1.00386 0.98291 1.70095 1.42234 1.15334 1.29843 0.85281 0.78976 0.77363 0.78378 1.19577 1.18773 1.20465 1.24294 0.95629 0.94976 0.98499 0.84258 0.92054 0.92094 0.79459 0.79522 0.86745 0.89003 0.92727 0.97933 1.00330 0.92492 0.92486 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.35 -6.07 9.81 -56.66 -0.56 -6.62 16 3 C 0.50 11.84 7.89 70.24 0.55 12.40 16 4 O -0.50 -15.45 13.72 26.81 0.37 -15.08 16 5 C -0.10 -2.09 5.88 -20.03 -0.12 -2.21 16 6 C -0.08 -1.01 9.59 22.58 0.22 -0.79 16 7 C 0.12 1.57 7.28 22.32 0.16 1.74 16 8 F -0.12 -1.42 17.26 44.97 0.78 -0.65 16 9 C -0.13 -1.79 9.98 22.38 0.22 -1.57 16 10 C 0.09 2.04 7.30 22.42 0.16 2.20 16 11 F -0.13 -3.33 17.11 44.97 0.77 -2.56 16 12 C 0.10 2.48 5.63 22.88 0.13 2.61 16 13 O -0.31 -10.61 8.39 -69.67 -0.58 -11.20 16 14 C 0.10 3.35 3.91 30.94 0.12 3.47 16 15 C 0.01 0.57 6.96 83.58 0.58 1.15 16 16 N -0.48 -22.55 6.32 -932.86 -5.89 -28.44 16 17 C 0.18 10.15 4.57 85.55 0.39 10.54 16 18 C -0.53 -31.69 9.39 25.60 0.24 -31.45 16 19 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 20 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 21 N -0.93 -58.26 13.29 21.45 0.28 -57.97 16 22 Si 0.98 45.63 29.54 68.60 2.03 47.66 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 C 0.00 -0.19 7.55 83.58 0.63 0.44 16 27 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.19 1.53 7.61 -2.91 -0.02 1.50 16 31 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.11 3.52 7.96 -2.38 -0.02 3.50 16 33 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 34 H 0.05 2.42 7.91 -2.39 -0.02 2.40 16 35 H 0.00 0.16 8.08 -2.38 -0.02 0.14 16 36 H -0.02 -1.29 7.30 -2.39 -0.02 -1.31 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.06 2.55 7.42 -2.39 -0.02 2.54 16 39 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -73.84 349.87 3.24 -70.60 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.09 Total: 3.69 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 4.96 Total: 0.57 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -5.61 Total: -86.41 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.77 Total: -32.90 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 1.55 Total: -3.21 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.84 3.24 -70.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227752974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.972 kcal (2) G-P(sol) polarization free energy of solvation -73.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds