Wall clock time and date at job start Tue Mar 31 2020 15:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34756 * 116.99873 * 2 1 4 4 O 1.21516 * 119.99793 * 0.02562 * 3 2 1 5 5 C 1.47402 * 120.00060 * 180.02562 * 3 2 1 6 6 C 1.39834 * 120.17734 * 5.76803 * 5 3 2 7 7 C 1.37936 * 119.91367 * 180.27242 * 6 5 3 8 8 F 1.35102 * 119.85947 * 179.76746 * 7 6 5 9 9 C 1.38746 * 120.27946 * 359.75193 * 7 6 5 10 10 C 1.38205 * 120.35677 * 0.02562 * 9 7 6 11 11 F 1.35098 * 119.96415 * 179.97438 * 10 9 7 12 12 C 1.38901 * 120.07325 * 359.95316 * 10 9 7 13 13 O 1.35737 * 120.13564 * 180.02562 * 12 10 9 14 14 C 1.42901 * 116.99768 * 276.78358 * 13 12 10 15 15 H 1.08999 * 110.88536 * 335.09263 * 14 13 12 16 16 C 1.55163 * 111.00463 * 211.21437 * 14 13 12 17 17 C 1.54326 * 102.94340 * 206.38422 * 16 14 13 18 18 N 1.47028 * 107.26918 * 22.19139 * 17 16 14 19 19 C 1.36932 * 125.64770 * 181.01746 * 18 17 16 20 20 H 1.07995 * 120.00158 * 182.98902 * 19 18 17 21 21 C 1.38813 * 119.99786 * 2.99025 * 19 18 17 22 22 N 1.31618 * 120.00008 * 210.84734 * 21 19 18 23 23 Si 1.86806 * 120.00081 * 31.12688 * 21 19 18 24 24 H 1.48499 * 109.46816 * 275.45062 * 23 21 19 25 25 H 1.48501 * 109.47162 * 35.45182 * 23 21 19 26 26 H 1.48500 * 109.47077 * 155.45460 * 23 21 19 27 27 C 1.47425 * 108.70341 * 1.28767 * 18 17 16 28 28 H 1.09008 * 109.47364 * 299.99286 * 1 2 3 29 29 H 1.08998 * 109.47569 * 59.99671 * 1 2 3 30 30 H 1.09000 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.03901 * 0.02562 * 6 5 3 32 32 H 1.07998 * 119.82339 * 179.97438 * 9 7 6 33 33 H 1.09001 * 110.71479 * 88.02379 * 16 14 13 34 34 H 1.08997 * 110.71870 * 324.74877 * 16 14 13 35 35 H 1.08994 * 109.88227 * 262.77601 * 17 16 14 36 36 H 1.08995 * 110.00567 * 141.67832 * 17 16 14 37 37 H 0.97005 * 120.00044 * 5.36014 * 22 21 19 38 38 H 1.09000 * 110.36786 * 94.47893 * 27 18 17 39 39 H 1.08995 * 110.36550 * 216.80306 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2198 0.0005 5 6 3.5357 1.2779 -0.0006 6 6 4.3006 0.1137 -0.1226 7 6 5.6777 0.1916 -0.1168 8 9 6.4157 -0.9344 -0.2301 9 6 6.3083 1.4216 0.0044 10 6 5.5635 2.5799 0.1211 11 9 6.1857 3.7732 0.2393 12 6 4.1758 2.5185 0.1166 13 8 3.4430 3.6554 0.2306 14 6 3.2208 4.1543 1.5511 15 1 3.2884 3.3521 2.2860 16 6 1.8545 4.8833 1.6476 17 6 2.0766 5.8822 2.8029 18 7 3.5264 6.0949 2.9233 19 6 4.1410 6.8994 3.8453 20 1 5.2131 7.0270 3.8212 21 6 3.3860 7.5508 4.8110 22 7 3.7800 8.7163 5.2788 23 14 1.8149 6.7698 5.4522 24 1 0.6903 7.0998 4.5404 25 1 1.9849 5.2959 5.5154 26 1 1.5207 7.2929 6.8105 27 6 4.2083 5.3037 1.8830 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8137 -0.8456 -0.2172 32 1 7.3870 1.4740 0.0085 33 1 1.0588 4.1800 1.8935 34 1 1.6321 5.4101 0.7197 35 1 1.6843 5.4680 3.7316 36 1 1.5806 6.8267 2.5796 37 1 4.5544 9.1565 4.8945 38 1 4.3919 5.9159 1.0001 39 1 5.1450 4.8995 2.2668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227753882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:57 Heat of formation + Delta-G solvation = -157.357938 kcal Electronic energy + Delta-G solvation = -28487.533632 eV Core-core repulsion = 24032.813074 eV Total energy + Delta-G solvation = -4454.720559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.21814 -50.13662 -41.93536 -40.63968 -39.42220 -37.89484 -37.38167 -34.63907 -32.81142 -31.74557 -30.65034 -29.58783 -28.68369 -26.07904 -25.60837 -23.98436 -22.72766 -22.48361 -21.97452 -19.92454 -19.63219 -19.32036 -18.89598 -17.94033 -17.69289 -17.38174 -17.27135 -17.10928 -16.94151 -16.61859 -16.38737 -15.92964 -15.63025 -15.36601 -15.17041 -14.92292 -14.81722 -14.37166 -14.28443 -14.19632 -13.61130 -13.34312 -13.15332 -13.06205 -12.96503 -12.89051 -12.82834 -12.41304 -11.90989 -11.78337 -11.76705 -11.61707 -11.25680 -11.00417 -10.64132 -10.45405 -9.85548 -9.23877 -8.74294 -5.44338 -0.92156 -0.46694 1.17232 1.39540 1.44186 1.49080 1.68960 1.85994 2.35487 2.51661 2.61301 2.89794 2.95012 3.28824 3.34738 3.48532 3.59639 3.67577 3.74160 3.83796 3.96117 4.18025 4.27532 4.36021 4.39101 4.40839 4.46994 4.53387 4.62162 4.69985 4.78217 4.78887 4.84905 4.89625 5.07960 5.22224 5.29541 5.49165 6.02831 6.16582 6.59488 6.74708 7.39115 8.04589 8.76503 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.004172 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.110130 B = 6709.683367 C = 8108.520866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.350 6.350 3 C 0.506 3.494 4 O -0.496 6.496 5 C -0.097 4.097 6 C -0.075 4.075 7 C 0.123 3.877 8 F -0.117 7.117 9 C -0.129 4.129 10 C 0.086 3.914 11 F -0.127 7.127 12 C 0.097 3.903 13 O -0.307 6.307 14 C 0.097 3.903 15 H 0.079 0.921 16 C -0.100 4.100 17 C 0.108 3.892 18 N -0.626 5.626 19 C -0.334 4.334 20 H 0.049 0.951 21 C -0.063 4.063 22 N -0.940 5.940 23 Si 1.093 2.907 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.300 1.300 27 C 0.124 3.876 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.138 0.862 31 H 0.191 0.809 32 H 0.184 0.816 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.252 0.748 38 H 0.030 0.970 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 -26.005 -14.550 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.267 6.267 3 C 0.350 3.650 4 O -0.384 6.384 5 C -0.099 4.099 6 C -0.094 4.094 7 C 0.104 3.896 8 F -0.096 7.096 9 C -0.149 4.149 10 C 0.066 3.934 11 F -0.105 7.105 12 C 0.050 3.950 13 O -0.222 6.222 14 C 0.041 3.959 15 H 0.097 0.903 16 C -0.137 4.137 17 C -0.017 4.017 18 N -0.355 5.355 19 C -0.461 4.461 20 H 0.067 0.933 21 C -0.259 4.259 22 N -0.582 5.582 23 Si 0.920 3.080 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.229 1.229 27 C -0.002 4.002 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.208 0.792 32 H 0.201 0.799 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.833 -25.363 -13.547 29.008 hybrid contribution 1.956 0.690 -0.800 2.223 sum -1.878 -24.673 -14.347 28.603 Atomic orbital electron populations 1.23621 0.73804 1.06057 1.02753 1.86509 1.25443 1.30720 1.84008 1.20684 0.88312 0.82291 0.73753 1.90949 1.66556 1.36549 1.44320 1.18985 0.90776 0.92192 1.07983 1.21584 0.91549 0.99640 0.96606 1.16923 0.88654 0.81970 1.02098 1.91602 1.76514 1.48321 1.93137 1.21442 1.03594 0.89086 1.00757 1.17714 0.89235 0.82124 1.04355 1.91583 1.82172 1.43617 1.93171 1.19005 0.88623 0.86823 1.00502 1.86084 1.70295 1.37831 1.28035 1.23553 0.96297 0.94788 0.81292 0.90292 1.22502 0.95758 0.97202 0.98272 1.21855 0.85286 0.97524 0.96985 1.44736 1.01801 1.53755 1.35207 1.19901 0.92518 1.22363 1.11354 0.93260 1.26897 1.06439 0.95226 0.97319 1.70995 1.26637 1.12484 1.48053 0.83497 0.73799 0.75094 0.75622 1.19367 1.20227 1.22850 1.22042 0.94917 0.91778 0.91497 0.92011 0.91710 0.84405 0.79222 0.79852 0.88331 0.89631 0.94869 0.94618 0.93914 0.95247 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.35 -5.86 9.83 -56.67 -0.56 -6.42 16 3 C 0.51 11.57 7.88 70.24 0.55 12.13 16 4 O -0.50 -14.42 14.46 26.78 0.39 -14.03 16 5 C -0.10 -2.08 5.88 -20.03 -0.12 -2.20 16 6 C -0.08 -1.08 9.59 22.58 0.22 -0.86 16 7 C 0.12 1.78 7.28 22.32 0.16 1.94 16 8 F -0.12 -1.60 17.26 44.97 0.78 -0.82 16 9 C -0.13 -2.15 9.98 22.38 0.22 -1.93 16 10 C 0.09 2.09 7.30 22.42 0.16 2.25 16 11 F -0.13 -3.77 15.92 44.97 0.72 -3.05 16 12 C 0.10 2.60 5.60 22.88 0.13 2.73 16 13 O -0.31 -10.27 7.92 -69.73 -0.55 -10.82 16 14 C 0.10 3.52 3.36 32.07 0.11 3.62 16 15 H 0.08 2.74 7.92 -2.39 -0.02 2.72 16 16 C -0.10 -3.62 6.40 31.79 0.20 -3.41 16 17 C 0.11 4.85 4.89 86.73 0.42 5.27 16 18 N -0.63 -32.50 3.34 -691.56 -2.31 -34.81 16 19 C -0.33 -20.17 10.41 84.03 0.87 -19.30 16 20 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 21 C -0.06 -3.85 5.42 84.86 0.46 -3.39 16 22 N -0.94 -61.07 13.70 21.65 0.30 -60.77 16 23 Si 1.09 54.27 24.67 68.60 1.69 55.96 16 24 H -0.27 -12.18 6.58 99.48 0.65 -11.53 16 25 H -0.28 -12.72 6.71 99.48 0.67 -12.06 16 26 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 27 C 0.12 5.43 6.21 86.93 0.54 5.97 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.14 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.19 1.64 7.62 -2.91 -0.02 1.62 16 32 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.10 3.13 8.14 -2.39 -0.02 3.12 16 34 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.03 1.51 3.99 -2.39 -0.01 1.50 16 36 H 0.04 1.68 7.52 -2.39 -0.02 1.66 16 37 H 0.25 16.45 8.73 -92.70 -0.81 15.64 16 38 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.83 7.75 -2.39 -0.02 1.81 16 Total: -1.00 -74.93 336.75 6.56 -68.38 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 0.97 Total: 2.01 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.14 Total: 4.38 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -2.01 Total: -95.58 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.72 Total: -31.27 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 1.49 Total: -3.87 kcal Atomic # 14 Polarization: 54.27 SS G_CDS: 1.69 Total: 55.96 kcal Total: -74.93 6.56 -68.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227753882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.979 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds