Wall clock time and date at job start Tue Mar 31 2020 15:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47109 * 2 1 4 4 C 1.34230 * 117.00018 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00046 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.47017 * 54.99761 * 7 6 4 9 9 C 1.50698 * 109.47721 * 174.99887 * 7 6 4 10 10 H 1.07994 * 120.00417 * 240.00789 * 9 7 6 11 11 C 1.37880 * 119.99699 * 59.99248 * 9 7 6 12 12 N 1.31511 * 120.00362 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99897 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.46945 * 90.00626 * 13 11 9 15 15 H 1.48505 * 109.47239 * 210.00624 * 13 11 9 16 16 H 1.48502 * 109.47052 * 330.00453 * 13 11 9 17 17 O 1.42903 * 109.47386 * 295.00166 * 7 6 4 18 18 C 1.34953 * 117.00486 * 149.99647 * 17 7 6 19 19 O 1.33902 * 127.14646 * 359.68648 * 18 17 7 20 20 N 1.20731 * 112.05868 * 179.78321 * 19 18 17 21 21 C 1.29845 * 112.71722 * 0.50520 * 20 19 18 22 22 C 1.39603 * 127.14683 * 179.97438 * 18 17 7 23 23 C 1.46672 * 128.39836 * 359.97438 * 22 18 17 24 24 O 1.21602 * 119.99894 * 359.97438 * 23 22 18 25 25 O 1.34840 * 119.99880 * 179.97438 * 23 22 18 26 26 C 1.45205 * 116.99879 * 179.97438 * 25 23 22 27 27 C 1.53004 * 109.46981 * 180.02562 * 26 25 23 28 28 H 1.08998 * 109.47698 * 59.99951 * 1 2 3 29 29 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47066 * 299.99718 * 1 2 3 31 31 H 1.09001 * 109.46829 * 239.99566 * 2 1 3 32 32 H 1.08998 * 109.47230 * 120.00301 * 2 1 3 33 33 H 1.09002 * 109.47060 * 299.99765 * 6 4 3 34 34 H 1.09001 * 109.47380 * 59.99853 * 6 4 3 35 35 H 0.96992 * 120.00719 * 179.97438 * 12 11 9 36 36 H 1.08000 * 126.84073 * 179.67851 * 21 20 19 37 37 H 1.08998 * 109.47244 * 299.99947 * 26 25 23 38 38 H 1.08997 * 109.46946 * 60.00115 * 26 25 23 39 39 H 1.08997 * 109.47022 * 59.99455 * 27 26 25 40 40 H 1.08999 * 109.47090 * 180.02562 * 27 26 25 41 41 H 1.09007 * 109.46944 * 300.00198 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7805 2.2499 -0.8423 9 6 6.0244 4.2445 -0.1234 10 1 6.6590 4.4932 -0.9611 11 6 5.7407 5.1961 0.8331 12 7 4.9681 4.8932 1.8533 13 14 6.4539 6.9158 0.6799 14 1 5.5189 7.7724 -0.0927 15 1 6.6497 7.4930 2.0342 16 1 7.7602 6.8491 -0.0233 17 8 5.8946 2.2632 1.2206 18 6 7.0454 1.5597 1.1751 19 8 7.8217 1.3478 0.1049 20 7 8.7923 0.6819 0.3736 21 6 8.8309 0.3334 1.6238 22 6 7.6707 0.8970 2.2328 23 6 7.2395 0.8035 3.6316 24 8 6.2136 1.3497 3.9894 25 8 7.9806 0.1118 4.5207 26 6 7.4934 0.0620 5.8877 27 6 8.4590 -0.7602 6.7436 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5844 3.4700 -0.8895 34 1 3.5852 3.4690 0.8905 35 1 4.7688 5.5625 2.5264 36 1 9.5902 -0.2642 2.1063 37 1 7.4265 1.0742 6.2867 38 1 6.5070 -0.4014 5.9052 39 1 9.4452 -0.2964 6.7259 40 1 8.0931 -0.7979 7.7697 41 1 8.5264 -1.7724 6.3447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228715385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:07 Heat of formation + Delta-G solvation = -156.619154 kcal Electronic energy + Delta-G solvation = -28871.530311 eV Core-core repulsion = 24527.929304 eV Total energy + Delta-G solvation = -4343.601007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.22745 -39.92406 -39.62706 -38.03900 -36.09243 -35.92325 -33.64758 -33.32642 -31.66470 -31.51482 -30.78618 -29.65293 -26.49551 -24.98617 -23.57965 -22.97959 -22.36248 -21.42919 -20.30605 -20.00609 -18.61105 -17.53959 -17.32804 -17.09912 -16.30347 -16.17755 -16.06602 -15.89077 -15.68791 -14.83460 -14.33408 -14.04168 -13.80367 -13.75823 -13.61598 -13.36575 -13.04414 -12.76624 -12.63317 -12.52952 -12.24372 -11.83094 -11.74042 -11.61142 -11.47577 -11.32985 -11.12241 -10.99559 -10.82012 -10.65038 -10.23249 -10.20726 -10.00897 -9.92276 -9.88868 -9.78845 -9.56679 -8.91038 -7.90919 -6.40887 -4.65066 1.89041 2.37771 2.81740 2.89221 3.10863 3.19986 3.22257 3.25182 3.43284 3.62078 4.08881 4.13626 4.75384 4.96351 5.02329 5.05793 5.06650 5.11132 5.25600 5.31967 5.34777 5.42262 5.47849 5.71987 5.82745 5.85186 5.87111 5.91312 6.01807 6.03646 6.13122 6.21308 6.36081 6.53743 6.84836 6.86988 7.08367 7.49803 7.61728 7.95868 8.37687 8.39158 8.51313 8.81158 9.14264 10.60154 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.007556 B = 0.005414 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3704.602266 B = 5170.641499 C = 7038.533513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.363 6.363 4 C 0.458 3.542 5 O -0.519 6.519 6 C -0.102 4.102 7 C 0.206 3.794 8 H 0.048 0.952 9 C -0.566 4.566 10 H 0.078 0.922 11 C 0.084 3.916 12 N -0.846 5.846 13 Si 0.903 3.097 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.269 1.269 17 O -0.203 6.203 18 C 0.317 3.683 19 O 0.054 5.946 20 N -0.377 5.377 21 C 0.071 3.929 22 C -0.338 4.338 23 C 0.553 3.447 24 O -0.495 6.495 25 O -0.361 6.361 26 C 0.064 3.936 27 C -0.150 4.150 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.145 0.855 35 H 0.274 0.726 36 H 0.197 0.803 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 -8.211 2.867 8.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.281 6.281 4 C 0.302 3.698 5 O -0.407 6.407 6 C -0.139 4.139 7 C 0.154 3.846 8 H 0.066 0.934 9 C -0.602 4.602 10 H 0.096 0.904 11 C -0.126 4.126 12 N -0.480 5.480 13 Si 0.729 3.271 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.193 1.193 17 O -0.109 6.109 18 C 0.203 3.797 19 O 0.004 5.996 20 N -0.100 5.100 21 C -0.111 4.111 22 C -0.346 4.346 23 C 0.398 3.602 24 O -0.383 6.383 25 O -0.279 6.279 26 C -0.010 4.010 27 C -0.207 4.207 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.162 0.838 35 H 0.084 0.916 36 H 0.214 0.786 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.065 -8.356 2.266 8.723 hybrid contribution -0.128 0.833 0.815 1.172 sum -1.193 -7.524 3.081 8.217 Atomic orbital electron populations 1.21779 0.93167 1.02404 1.03374 1.22887 0.94949 0.81547 1.02152 1.86556 1.25762 1.31208 1.84562 1.24792 0.79753 0.94101 0.71114 1.90598 1.60321 1.43697 1.46079 1.21834 0.95420 0.88649 1.07995 1.20255 0.89942 0.93570 0.80851 0.93377 1.21377 1.33789 0.93878 1.11206 0.90420 1.25161 0.93600 0.99621 0.94176 1.69845 1.32952 1.34949 1.10238 0.86402 0.79934 0.82832 0.77948 1.19859 1.20683 1.19320 1.86763 1.27338 1.57638 1.39131 1.23345 0.85541 0.85378 0.85427 1.84865 1.26528 1.54732 1.33516 1.73503 1.05072 1.13457 1.17934 1.24631 0.97435 0.99235 0.89847 1.18789 1.03512 1.19941 0.92403 1.19175 0.81207 0.75555 0.84269 1.90941 1.24122 1.43865 1.79365 1.86511 1.52519 1.68689 1.20221 1.22908 0.98100 1.01210 0.78782 1.21785 0.99832 1.00476 0.98592 0.91662 0.90766 0.91546 0.91764 0.91648 0.87013 0.83788 0.91617 0.78565 0.91378 0.91493 0.91588 0.90558 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 37.16 0.38 -1.24 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.36 -6.64 10.22 -39.26 -0.40 -7.04 16 4 C 0.46 9.62 7.84 36.01 0.28 9.90 16 5 O -0.52 -12.00 15.17 -24.05 -0.36 -12.36 16 6 C -0.10 -2.21 5.22 -27.88 -0.15 -2.35 16 7 C 0.21 4.96 1.76 -27.89 -0.05 4.91 16 8 H 0.05 1.13 7.21 -51.92 -0.37 0.75 16 9 C -0.57 -14.21 8.90 -34.44 -0.31 -14.52 16 10 H 0.08 1.91 7.81 -52.49 -0.41 1.50 16 11 C 0.08 2.12 5.24 -17.82 -0.09 2.03 16 12 N -0.85 -22.18 10.93 55.43 0.61 -21.57 16 13 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 14 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 O -0.20 -5.24 8.08 -46.62 -0.38 -5.62 16 18 C 0.32 7.55 8.00 31.24 0.25 7.80 16 19 O 0.05 1.21 10.30 -5.52 -0.06 1.15 16 20 N -0.38 -7.61 11.98 30.85 0.37 -7.24 16 21 C 0.07 1.29 12.11 -16.69 -0.20 1.09 16 22 C -0.34 -7.28 6.35 -104.29 -0.66 -7.95 16 23 C 0.55 11.78 7.93 34.14 0.27 12.05 16 24 O -0.50 -12.20 16.47 -20.80 -0.34 -12.55 16 25 O -0.36 -6.20 10.15 -40.87 -0.41 -6.62 16 26 C 0.06 0.89 6.20 37.16 0.23 1.12 16 27 C -0.15 -1.45 10.29 37.16 0.38 -1.06 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 32 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 33 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 34 H 0.14 3.42 6.22 -51.93 -0.32 3.10 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.20 2.64 8.06 -52.49 -0.42 2.22 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -31.07 367.63 -5.21 -36.28 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.31 Total: 2.57 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 0.57 Total: 12.87 kcal Atomic # 7 Polarization: -29.79 SS G_CDS: 0.98 Total: -28.81 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -1.96 Total: -43.04 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.07 -5.21 -36.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228715385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.342 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds