Wall clock time and date at job start Tue Mar 31 2020 15:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34786 * 117.00200 * 2 1 4 4 O 1.21546 * 119.99721 * 359.97438 * 3 2 1 5 5 C 1.47118 * 120.00018 * 180.02562 * 3 2 1 6 6 C 1.40104 * 120.19888 * 90.24647 * 5 3 2 7 7 F 1.35102 * 120.06858 * 0.02562 * 6 5 3 8 8 C 1.37996 * 119.85912 * 180.27463 * 6 5 3 9 9 C 1.38718 * 120.24895 * 359.72765 * 8 6 5 10 10 F 1.35109 * 119.80274 * 180.02562 * 9 8 6 11 11 C 1.38441 * 120.39801 * 0.02562 * 9 8 6 12 12 C 1.38499 * 120.13387 * 359.97438 * 11 9 8 13 13 O 1.35638 * 120.12378 * 179.97438 * 12 11 9 14 14 C 1.42898 * 116.99930 * 5.31292 * 13 12 11 15 15 H 1.08997 * 110.88931 * 38.46108 * 14 13 12 16 16 C 1.55164 * 111.00271 * 162.38109 * 14 13 12 17 17 C 1.54340 * 103.02033 * 153.38031 * 16 14 13 18 18 N 1.47019 * 107.26608 * 338.14327 * 17 16 14 19 19 C 1.36938 * 125.64740 * 178.84561 * 18 17 16 20 20 H 1.08004 * 119.99929 * 179.69044 * 19 18 17 21 21 C 1.38804 * 119.99729 * 359.42133 * 19 18 17 22 22 N 1.31621 * 120.00572 * 0.26651 * 21 19 18 23 23 Si 1.86808 * 119.99831 * 180.27526 * 21 19 18 24 24 H 1.48496 * 109.47234 * 59.99688 * 23 21 19 25 25 H 1.48500 * 109.47241 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47069 * 299.99712 * 23 21 19 27 27 C 1.47425 * 108.70295 * 358.58524 * 18 17 16 28 28 H 1.09005 * 109.46712 * 300.00127 * 1 2 3 29 29 H 1.08996 * 109.47103 * 59.99552 * 1 2 3 30 30 H 1.08991 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.87106 * 179.75072 * 8 6 5 32 32 H 1.07992 * 119.92897 * 180.02562 * 11 9 8 33 33 H 1.08995 * 110.72173 * 271.94283 * 16 14 13 34 34 H 1.08997 * 110.71599 * 35.03780 * 16 14 13 35 35 H 1.09001 * 109.99148 * 218.66323 * 17 16 14 36 36 H 1.09001 * 109.77476 * 97.49676 * 17 16 14 37 37 H 0.96995 * 120.00600 * 180.02562 * 22 21 19 38 38 H 1.09000 * 110.36868 * 143.20088 * 27 18 17 39 39 H 1.09000 * 110.36245 * 265.40612 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2009 0.0000 4 8 1.4020 2.2203 -0.0005 5 6 3.5331 1.2779 -0.0006 6 6 4.2361 1.3202 -1.2117 7 9 3.5663 1.2909 -2.3846 8 6 5.6145 1.3866 -1.2041 9 6 6.3060 1.4173 -0.0020 10 9 7.6555 1.4829 -0.0050 11 6 5.6217 1.3812 1.2009 12 6 4.2383 1.3145 1.2122 13 8 3.5681 1.2785 2.3908 14 6 4.3423 1.4302 3.5823 15 1 5.1340 2.1659 3.4403 16 6 3.4406 1.8080 4.7872 17 6 4.2317 1.2665 5.9968 18 7 5.1385 0.2242 5.4939 19 6 6.0305 -0.4897 6.2488 20 1 6.6517 -1.2410 5.7839 21 6 6.1401 -0.2439 7.6105 22 7 5.3832 0.6717 8.1772 23 14 7.3624 -1.2124 8.6390 24 1 8.7354 -0.9841 8.1214 25 1 7.2856 -0.7633 10.0524 26 1 7.0381 -2.6595 8.5607 27 6 4.9240 0.0706 4.0434 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 6.1568 1.4151 -2.1376 32 1 6.1676 1.4059 2.1324 33 1 3.3203 2.8891 4.8548 34 1 2.4703 1.3174 4.7113 35 1 3.5465 0.8399 6.7294 36 1 4.8085 2.0722 6.4508 37 1 5.4601 0.8438 9.1286 38 1 5.8697 -0.1282 3.5391 39 1 4.2144 -0.7334 3.8480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228907674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:02 Heat of formation + Delta-G solvation = -147.200134 kcal Electronic energy + Delta-G solvation = -28023.361061 eV Core-core repulsion = 23569.080978 eV Total energy + Delta-G solvation = -4454.280083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.46852 -49.31763 -40.92554 -39.93050 -37.89974 -36.48283 -36.29651 -32.51160 -31.43337 -30.51385 -29.33613 -27.89030 -27.54374 -24.81212 -24.32975 -23.21843 -21.53822 -20.69605 -20.27209 -19.05493 -18.22167 -17.91516 -17.27993 -17.00555 -16.88596 -16.33164 -16.19554 -15.87733 -15.63956 -15.23168 -15.15218 -14.78227 -14.66271 -14.14680 -14.03836 -13.59618 -13.22968 -12.94012 -12.62813 -12.54013 -12.28227 -12.23210 -12.18025 -11.84795 -11.53527 -11.06411 -10.91967 -10.87882 -10.77694 -10.49589 -10.44841 -10.19572 -10.07232 -9.81535 -9.20785 -8.73642 -8.69402 -7.00853 -5.83482 -3.19197 0.36023 0.74183 1.89752 2.46525 2.69837 2.95734 3.35005 3.39530 3.40615 3.54404 3.96724 4.35751 4.41204 4.47374 4.54634 4.66930 4.94035 4.97070 5.06601 5.11879 5.26850 5.36368 5.38157 5.43128 5.43426 5.51973 5.55154 5.68439 5.97236 6.12908 6.14169 6.25606 6.27327 6.37894 6.46304 7.16180 7.40133 7.42521 7.50794 7.68067 8.10072 9.07529 9.67092 10.29866 11.28136 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003527 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.824958 B = 7937.400359 C = 9217.768654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.346 6.346 3 C 0.534 3.466 4 O -0.488 6.488 5 C -0.202 4.202 6 C 0.208 3.792 7 F -0.118 7.118 8 C -0.236 4.236 9 C 0.199 3.801 10 F -0.119 7.119 11 C -0.255 4.255 12 C 0.244 3.756 13 O -0.287 6.287 14 C 0.058 3.942 15 H 0.089 0.911 16 C -0.133 4.133 17 C 0.178 3.822 18 N -0.600 5.600 19 C -0.235 4.235 20 H 0.080 0.920 21 C -0.003 4.003 22 N -0.921 5.921 23 Si 0.915 3.085 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.118 3.882 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.255 0.745 38 H 0.047 0.953 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.180 1.482 -18.318 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.262 6.262 3 C 0.376 3.624 4 O -0.374 6.374 5 C -0.205 4.205 6 C 0.188 3.812 7 F -0.096 7.096 8 C -0.256 4.256 9 C 0.179 3.821 10 F -0.098 7.098 11 C -0.275 4.275 12 C 0.194 3.806 13 O -0.198 6.198 14 C 0.002 3.998 15 H 0.107 0.893 16 C -0.172 4.172 17 C 0.054 3.946 18 N -0.328 5.328 19 C -0.363 4.363 20 H 0.098 0.902 21 C -0.200 4.200 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.210 1.210 27 C -0.009 4.009 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.554 1.753 -18.047 18.695 hybrid contribution 0.750 -0.414 0.428 0.958 sum -3.804 1.339 -17.619 18.075 Atomic orbital electron populations 1.23340 0.75815 1.03995 1.02741 1.86673 1.23690 1.32186 1.83641 1.20381 0.87949 0.81944 0.72139 1.90877 1.66323 1.36068 1.44122 1.18120 0.90837 1.20061 0.91496 1.16581 0.88757 0.96474 0.79355 1.91574 1.80383 1.93024 1.44586 1.20702 0.92207 1.13325 0.99321 1.17042 0.77168 0.95185 0.92740 1.91584 1.28198 1.92677 1.97300 1.21388 0.93398 1.12962 0.99740 1.18115 0.89117 0.88001 0.85341 1.86137 1.37099 1.84358 1.12180 1.24204 0.94644 1.00091 0.80844 0.89290 1.23069 0.99258 1.01160 0.93682 1.21247 0.91443 0.91556 0.90389 1.44316 1.44142 1.43387 1.00991 1.19005 1.13100 1.14451 0.89743 0.90224 1.24818 0.99620 0.98972 0.96610 1.69915 1.41414 1.34588 1.10897 0.86155 0.80626 0.79340 0.79364 1.21018 1.21482 1.21019 1.21993 0.98039 0.93196 0.87705 0.91453 0.91813 0.87773 0.82396 0.81749 0.90929 0.90920 0.92996 0.92723 0.93447 0.93524 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 101.05 1.07 1.41 16 2 O -0.35 -4.71 10.58 -40.73 -0.43 -5.14 16 3 C 0.53 8.10 6.56 34.33 0.23 8.32 16 4 O -0.49 -8.30 16.90 -19.30 -0.33 -8.63 16 5 C -0.20 -2.83 5.77 -104.81 -0.60 -3.44 16 6 C 0.21 2.49 7.29 -38.97 -0.28 2.21 16 7 F -0.12 -1.39 16.83 2.25 0.04 -1.35 16 8 C -0.24 -2.41 9.98 -39.49 -0.39 -2.80 16 9 C 0.20 2.26 7.30 -39.33 -0.29 1.97 16 10 F -0.12 -1.37 17.26 2.25 0.04 -1.33 16 11 C -0.26 -3.27 8.68 -39.41 -0.34 -3.61 16 12 C 0.24 3.50 6.65 -38.70 -0.26 3.24 16 13 O -0.29 -4.64 9.40 -18.61 -0.18 -4.82 16 14 C 0.06 0.98 2.82 -24.58 -0.07 0.91 16 15 H 0.09 1.39 6.61 -51.93 -0.34 1.05 16 16 C -0.13 -2.39 6.68 -24.88 -0.17 -2.56 16 17 C 0.18 4.08 5.38 -3.06 -0.02 4.07 16 18 N -0.60 -14.59 3.39 -170.07 -0.58 -15.16 16 19 C -0.24 -6.28 10.28 -15.06 -0.15 -6.44 16 20 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 21 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 22 N -0.92 -25.98 10.31 55.49 0.57 -25.40 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.12 2.30 6.59 -2.53 -0.02 2.29 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.17 2.12 5.29 -52.49 -0.28 1.84 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 1.32 7.53 -51.93 -0.39 0.93 16 36 H 0.05 1.37 7.36 -51.93 -0.38 0.98 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.05 0.86 7.24 -51.93 -0.38 0.48 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -30.35 342.65 -6.39 -36.74 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.27 Total: -1.78 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.40 Total: 5.38 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.00 Total: -40.57 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.93 Total: -18.58 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.35 -6.39 -36.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228907674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.459 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds