Wall clock time and date at job start Tue Mar 31 2020 15:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34786 * 117.00200 * 2 1 4 4 O 1.21546 * 119.99721 * 359.97438 * 3 2 1 5 5 C 1.47118 * 120.00018 * 180.02562 * 3 2 1 6 6 C 1.40104 * 120.19888 * 90.24647 * 5 3 2 7 7 F 1.35102 * 120.06858 * 0.02562 * 6 5 3 8 8 C 1.37996 * 119.85912 * 180.27463 * 6 5 3 9 9 C 1.38718 * 120.24895 * 359.72765 * 8 6 5 10 10 F 1.35109 * 119.80274 * 180.02562 * 9 8 6 11 11 C 1.38441 * 120.39801 * 0.02562 * 9 8 6 12 12 C 1.38499 * 120.13387 * 359.97438 * 11 9 8 13 13 O 1.35638 * 120.12378 * 179.97438 * 12 11 9 14 14 C 1.42898 * 116.99930 * 5.31292 * 13 12 11 15 15 H 1.08997 * 110.88931 * 38.46108 * 14 13 12 16 16 C 1.55164 * 111.00271 * 162.38109 * 14 13 12 17 17 C 1.54340 * 103.02033 * 153.38031 * 16 14 13 18 18 N 1.47019 * 107.26608 * 338.14327 * 17 16 14 19 19 C 1.36938 * 125.64740 * 178.84561 * 18 17 16 20 20 H 1.08004 * 119.99929 * 179.69044 * 19 18 17 21 21 C 1.38804 * 119.99729 * 359.42133 * 19 18 17 22 22 N 1.31621 * 120.00572 * 0.26651 * 21 19 18 23 23 Si 1.86808 * 119.99831 * 180.27526 * 21 19 18 24 24 H 1.48496 * 109.47234 * 59.99688 * 23 21 19 25 25 H 1.48500 * 109.47241 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47069 * 299.99712 * 23 21 19 27 27 C 1.47425 * 108.70295 * 358.58524 * 18 17 16 28 28 H 1.09005 * 109.46712 * 300.00127 * 1 2 3 29 29 H 1.08996 * 109.47103 * 59.99552 * 1 2 3 30 30 H 1.08991 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.87106 * 179.75072 * 8 6 5 32 32 H 1.07992 * 119.92897 * 180.02562 * 11 9 8 33 33 H 1.08995 * 110.72173 * 271.94283 * 16 14 13 34 34 H 1.08997 * 110.71599 * 35.03780 * 16 14 13 35 35 H 1.09001 * 109.99148 * 218.66323 * 17 16 14 36 36 H 1.09001 * 109.77476 * 97.49676 * 17 16 14 37 37 H 0.96995 * 120.00600 * 180.02562 * 22 21 19 38 38 H 1.09000 * 110.36868 * 143.20088 * 27 18 17 39 39 H 1.09000 * 110.36245 * 265.40612 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2009 0.0000 4 8 1.4020 2.2203 -0.0005 5 6 3.5331 1.2779 -0.0006 6 6 4.2361 1.3202 -1.2117 7 9 3.5663 1.2909 -2.3846 8 6 5.6145 1.3866 -1.2041 9 6 6.3060 1.4173 -0.0020 10 9 7.6555 1.4829 -0.0050 11 6 5.6217 1.3812 1.2009 12 6 4.2383 1.3145 1.2122 13 8 3.5681 1.2785 2.3908 14 6 4.3423 1.4302 3.5823 15 1 5.1340 2.1659 3.4403 16 6 3.4406 1.8080 4.7872 17 6 4.2317 1.2665 5.9968 18 7 5.1385 0.2242 5.4939 19 6 6.0305 -0.4897 6.2488 20 1 6.6517 -1.2410 5.7839 21 6 6.1401 -0.2439 7.6105 22 7 5.3832 0.6717 8.1772 23 14 7.3624 -1.2124 8.6390 24 1 8.7354 -0.9841 8.1214 25 1 7.2856 -0.7633 10.0524 26 1 7.0381 -2.6595 8.5607 27 6 4.9240 0.0706 4.0434 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 6.1568 1.4151 -2.1376 32 1 6.1676 1.4059 2.1324 33 1 3.3203 2.8891 4.8548 34 1 2.4703 1.3174 4.7113 35 1 3.5465 0.8399 6.7294 36 1 4.8085 2.0722 6.4508 37 1 5.4601 0.8438 9.1286 38 1 5.8697 -0.1282 3.5391 39 1 4.2144 -0.7334 3.8480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228907674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:01 Heat of formation + Delta-G solvation = -163.932029 kcal Electronic energy + Delta-G solvation = -28024.086611 eV Core-core repulsion = 23569.080978 eV Total energy + Delta-G solvation = -4455.005633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.39714 -50.23059 -42.04239 -41.09614 -39.17274 -37.76616 -37.56669 -34.35860 -32.50992 -31.66841 -30.96200 -29.26289 -28.62986 -26.62389 -25.32777 -24.39515 -22.63480 -22.21612 -21.85035 -20.15124 -19.29102 -19.18400 -18.64638 -18.29221 -18.01954 -17.29104 -17.19874 -16.95961 -16.72185 -16.56229 -16.45480 -16.18702 -15.71647 -15.63700 -15.29923 -14.92570 -14.42875 -14.24591 -13.99911 -13.92130 -13.66058 -13.40776 -13.15948 -13.04284 -12.94763 -12.77876 -12.61327 -12.20494 -12.09644 -11.92227 -11.90129 -11.89336 -11.69448 -11.56416 -10.72495 -10.18610 -9.75076 -8.97696 -7.87763 -5.25258 -0.61975 -0.22102 0.76588 1.47410 1.49182 1.50864 1.54405 1.58423 1.97712 2.47855 2.58262 2.98209 3.31512 3.38505 3.48547 3.49944 3.53935 3.67076 3.75871 3.85011 3.95198 4.23079 4.29648 4.38611 4.44777 4.47470 4.51513 4.59823 4.66839 4.75318 4.78558 4.89456 4.92090 5.10404 5.30540 5.42148 5.55584 5.68864 5.94325 6.15073 6.41411 7.05417 7.70308 8.32860 9.22397 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003527 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.824958 B = 7937.400359 C = 9217.768654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.354 6.354 3 C 0.532 3.468 4 O -0.515 6.515 5 C -0.215 4.215 6 C 0.209 3.791 7 F -0.116 7.116 8 C -0.209 4.209 9 C 0.204 3.796 10 F -0.116 7.116 11 C -0.254 4.254 12 C 0.226 3.774 13 O -0.298 6.298 14 C 0.078 3.922 15 H 0.105 0.895 16 C -0.122 4.122 17 C 0.186 3.814 18 N -0.621 5.621 19 C -0.247 4.247 20 H 0.086 0.914 21 C -0.059 4.059 22 N -0.949 5.949 23 Si 0.979 3.021 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.278 1.278 27 C 0.116 3.884 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.136 0.864 31 H 0.192 0.808 32 H 0.163 0.837 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.016 0.984 36 H 0.027 0.973 37 H 0.249 0.751 38 H 0.060 0.940 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 1.102 -20.489 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.375 3.625 4 O -0.404 6.404 5 C -0.217 4.217 6 C 0.188 3.812 7 F -0.094 7.094 8 C -0.229 4.229 9 C 0.184 3.816 10 F -0.095 7.095 11 C -0.273 4.273 12 C 0.178 3.822 13 O -0.209 6.209 14 C 0.021 3.979 15 H 0.123 0.877 16 C -0.160 4.160 17 C 0.062 3.938 18 N -0.349 5.349 19 C -0.376 4.376 20 H 0.104 0.896 21 C -0.252 4.252 22 N -0.598 5.598 23 Si 0.807 3.193 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.204 1.204 27 C -0.010 4.010 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.210 0.790 32 H 0.181 0.819 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.034 0.966 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.620 1.349 -20.269 20.634 hybrid contribution 0.426 -0.350 0.959 1.107 sum -3.194 0.999 -19.310 19.598 Atomic orbital electron populations 1.23680 0.73898 1.06195 1.02945 1.86665 1.25693 1.31497 1.83116 1.20661 0.88512 0.81965 0.71380 1.90853 1.67031 1.36890 1.45611 1.18261 0.90497 1.20748 0.92242 1.16607 0.89254 0.96535 0.78758 1.91584 1.80512 1.92996 1.44287 1.20964 0.91358 1.10312 1.00229 1.16999 0.77211 0.94793 0.92604 1.91601 1.27995 1.92583 1.97271 1.21357 0.92744 1.12818 1.00415 1.18151 0.89672 0.89753 0.84644 1.86094 1.37138 1.85256 1.12417 1.23830 0.94434 0.98493 0.81095 0.87732 1.22877 0.98689 1.02403 0.92072 1.20958 0.90650 0.90388 0.91848 1.44575 1.43916 1.43367 1.03051 1.19405 1.13245 1.14561 0.90376 0.89623 1.25631 1.01575 1.00225 0.97818 1.70128 1.42956 1.36109 1.10568 0.85153 0.78806 0.78076 0.77282 1.20041 1.22095 1.20420 1.22092 0.98749 0.94759 0.85373 0.91935 0.90987 0.84626 0.79031 0.81941 0.88557 0.90507 0.96554 0.95439 0.94170 0.92167 0.95392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 16 2 O -0.35 -9.30 10.58 -56.97 -0.60 -9.90 16 3 C 0.53 15.72 6.56 70.15 0.46 16.18 16 4 O -0.52 -17.37 16.90 19.69 0.33 -17.04 16 5 C -0.21 -5.71 5.77 -19.98 -0.12 -5.83 16 6 C 0.21 4.47 7.29 22.67 0.17 4.64 16 7 F -0.12 -2.46 16.83 44.97 0.76 -1.71 16 8 C -0.21 -3.53 9.98 22.33 0.22 -3.30 16 9 C 0.20 4.02 7.30 22.43 0.16 4.19 16 10 F -0.12 -2.30 17.26 44.97 0.78 -1.53 16 11 C -0.25 -5.98 8.68 22.38 0.19 -5.78 16 12 C 0.23 6.16 6.65 22.84 0.15 6.31 16 13 O -0.30 -9.32 9.40 -89.52 -0.84 -10.16 16 14 C 0.08 2.55 2.82 31.99 0.09 2.64 16 15 H 0.10 3.11 6.61 -2.39 -0.02 3.10 16 16 C -0.12 -4.35 6.68 31.79 0.21 -4.13 16 17 C 0.19 8.80 5.38 86.74 0.47 9.26 16 18 N -0.62 -30.54 3.39 -691.97 -2.35 -32.89 16 19 C -0.25 -13.32 10.28 84.03 0.86 -12.46 16 20 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 21 C -0.06 -3.24 5.49 84.86 0.47 -2.77 16 22 N -0.95 -55.13 10.31 21.65 0.22 -54.91 16 23 Si 0.98 44.21 29.55 68.60 2.03 46.24 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 27 C 0.12 4.49 6.59 86.85 0.57 5.06 16 28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.16 3.89 5.29 -2.91 -0.02 3.87 16 33 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.02 0.87 7.53 -2.39 -0.02 0.85 16 36 H 0.03 1.42 7.36 -2.39 -0.02 1.41 16 37 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.06 2.15 7.24 -2.39 -0.02 2.14 16 39 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -66.56 342.65 6.54 -60.02 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.10 Total: 6.19 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 5.11 Total: 15.67 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -2.13 Total: -87.79 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -1.11 Total: -37.10 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 1.53 Total: -3.23 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.56 6.54 -60.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228907674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.911 kcal (2) G-P(sol) polarization free energy of solvation -66.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds