Wall clock time and date at job start Tue Mar 31 2020 15:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34780 * 116.99953 * 2 1 4 4 O 1.21545 * 120.00355 * 0.02562 * 3 2 1 5 5 C 1.47117 * 119.99808 * 180.02562 * 3 2 1 6 6 C 1.40109 * 120.19478 * 90.02173 * 5 3 2 7 7 F 1.35096 * 120.06814 * 359.95731 * 6 5 3 8 8 C 1.37996 * 119.85615 * 179.97438 * 6 5 3 9 9 C 1.38720 * 120.25363 * 359.97438 * 8 6 5 10 10 F 1.35097 * 119.80284 * 179.97438 * 9 8 6 11 11 C 1.38440 * 120.39426 * 359.75123 * 9 8 6 12 12 C 1.38494 * 120.13458 * 0.50629 * 11 9 8 13 13 O 1.35651 * 120.12723 * 179.76689 * 12 11 9 14 14 C 1.42896 * 116.99625 * 5.81905 * 13 12 11 15 15 C 1.53516 * 114.17116 * 156.74490 * 14 13 12 16 16 N 1.47484 * 87.92835 * 87.62040 * 15 14 13 17 17 C 1.46905 * 110.99695 * 138.70624 * 16 15 14 18 18 C 1.50696 * 109.47315 * 169.99875 * 17 16 15 19 19 H 1.08007 * 119.99600 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00258 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00104 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47175 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.46808 * 299.99673 * 22 20 18 25 25 H 1.48494 * 109.47407 * 59.99483 * 22 20 18 26 26 C 1.47477 * 87.83584 * 27.01587 * 16 15 14 27 27 H 1.08999 * 109.47526 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46859 * 299.99800 * 1 2 3 29 29 H 1.08995 * 109.47058 * 59.99536 * 1 2 3 30 30 H 1.08004 * 119.87240 * 179.97438 * 8 6 5 31 31 H 1.08001 * 119.93347 * 180.25302 * 11 9 8 32 32 H 1.09008 * 113.26059 * 23.79575 * 14 13 12 33 33 H 1.09000 * 113.47171 * 332.85841 * 15 14 13 34 34 H 1.09000 * 113.53521 * 202.39680 * 15 14 13 35 35 H 1.08999 * 109.47314 * 49.99870 * 17 16 15 36 36 H 1.09002 * 109.46730 * 290.00258 * 17 16 15 37 37 H 0.97002 * 119.99985 * 179.97438 * 21 20 18 38 38 H 1.09001 * 113.47979 * 87.75250 * 26 16 15 39 39 H 1.09005 * 113.47437 * 218.22280 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2203 0.0005 5 6 3.5331 1.2779 -0.0006 6 6 4.2363 1.3154 -1.2118 7 9 3.5666 1.2802 -2.3846 8 6 5.6143 1.3881 -1.2042 9 6 6.3056 1.4247 -0.0021 10 9 7.6547 1.4954 -0.0053 11 6 5.6210 1.3939 1.2008 12 6 4.2384 1.3155 1.2121 13 8 3.5680 1.2806 2.3909 14 6 4.3390 1.4566 3.5810 15 6 3.5311 1.9624 4.7844 16 7 3.2214 0.5554 5.0999 17 6 3.3014 0.3103 6.5461 18 6 2.7460 -1.0559 6.8556 19 1 2.3714 -1.6800 6.0576 20 6 2.7170 -1.5097 8.1572 21 7 3.1745 -0.7504 9.1287 22 14 2.0291 -3.2036 8.5407 23 1 2.1100 -3.4513 10.0027 24 1 0.6110 -3.2721 8.1052 25 1 2.8188 -4.2335 7.8192 26 6 4.4826 0.1861 4.4307 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 6.1566 1.4167 -2.1378 31 1 6.1666 1.4268 2.1323 32 1 5.2731 1.9929 3.4134 33 1 2.6552 2.5475 4.5042 34 1 4.1409 2.4534 5.5427 35 1 2.7218 1.0666 7.0755 36 1 4.3422 0.3605 6.8660 37 1 3.1538 -1.0695 10.0445 38 1 5.3473 0.2028 5.0941 39 1 4.4131 -0.7342 3.8507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228909092.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:57 Heat of formation + Delta-G solvation = -129.339731 kcal Electronic energy + Delta-G solvation = -27600.458486 eV Core-core repulsion = 23146.952888 eV Total energy + Delta-G solvation = -4453.505598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.54039 -49.46795 -41.09548 -40.19604 -38.86183 -36.84080 -36.43887 -32.95369 -31.59871 -30.59808 -29.36445 -27.75412 -25.81359 -25.48859 -24.39999 -23.55638 -21.92952 -21.34864 -20.12262 -18.96784 -18.25235 -17.79503 -17.24552 -16.96376 -16.45399 -16.38049 -16.27642 -15.98166 -15.74919 -15.56606 -15.34520 -14.93134 -14.81229 -14.45890 -13.94479 -13.86223 -13.51491 -13.24576 -12.85690 -12.61981 -12.41092 -12.32292 -12.13720 -12.01910 -11.72051 -11.27057 -11.00862 -10.85195 -10.77376 -10.62610 -10.47201 -10.28819 -9.79685 -9.36237 -9.32541 -8.81037 -8.49447 -7.99788 -6.09623 -4.11081 0.25453 0.62390 1.91038 2.45564 2.51489 2.85721 3.30750 3.34486 3.38148 3.41538 3.83399 4.29417 4.32663 4.36067 4.36697 4.44036 4.55660 4.64247 4.94539 5.04798 5.16264 5.20857 5.25720 5.29201 5.36752 5.48858 5.50500 5.59927 5.71824 5.87766 5.98468 6.06574 6.16555 6.20171 6.45854 6.97513 7.05412 7.53174 7.54413 7.75604 8.00237 8.35921 8.96210 9.53534 11.01413 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.003271 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.368778 B = 8559.320063 C = 9770.226866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.344 6.344 3 C 0.532 3.468 4 O -0.487 6.487 5 C -0.197 4.197 6 C 0.211 3.789 7 F -0.116 7.116 8 C -0.235 4.235 9 C 0.198 3.802 10 F -0.121 7.121 11 C -0.260 4.260 12 C 0.241 3.759 13 O -0.258 6.258 14 C 0.035 3.965 15 C 0.003 3.997 16 N -0.456 5.456 17 C 0.156 3.844 18 C -0.506 4.506 19 H 0.063 0.937 20 C 0.055 3.945 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.275 1.275 25 H -0.276 1.276 26 C -0.004 4.004 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.159 0.841 31 H 0.162 0.838 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.031 0.969 36 H 0.005 0.995 37 H 0.263 0.737 38 H 0.082 0.918 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 5.110 -20.586 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.260 6.260 3 C 0.374 3.626 4 O -0.373 6.373 5 C -0.200 4.200 6 C 0.191 3.809 7 F -0.094 7.094 8 C -0.255 4.255 9 C 0.178 3.822 10 F -0.099 7.099 11 C -0.279 4.279 12 C 0.191 3.809 13 O -0.168 6.168 14 C -0.021 4.021 15 C -0.127 4.127 16 N -0.179 5.179 17 C 0.030 3.970 18 C -0.545 4.545 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.540 5.540 22 Si 0.728 3.272 23 H -0.213 1.213 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.133 4.133 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.177 0.823 31 H 0.180 0.820 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.023 0.977 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.227 5.063 -20.518 21.552 hybrid contribution 0.544 -0.519 0.647 0.992 sum 4.771 4.544 -19.871 20.934 Atomic orbital electron populations 1.23360 0.75547 1.04132 1.02776 1.86661 1.23908 1.31977 1.83478 1.20331 0.87868 0.82093 0.72317 1.90881 1.66257 1.36077 1.44093 1.18160 0.91094 1.19347 0.91389 1.16603 0.88752 0.96113 0.79433 1.91584 1.80378 1.92918 1.44498 1.20719 0.92238 1.13169 0.99381 1.17007 0.77088 0.95346 0.92767 1.91575 1.28268 1.92714 1.97310 1.21215 0.93330 1.13897 0.99459 1.18177 0.89143 0.88089 0.85441 1.86223 1.35561 1.83634 1.11359 1.24029 0.94968 1.00543 0.82545 1.24027 0.99617 0.96005 0.93026 1.69146 1.28804 1.04320 1.15632 1.20314 0.96369 0.98320 0.81964 1.21037 1.40359 1.00376 0.92728 0.91831 1.24996 0.95545 0.97876 0.96195 1.69937 1.46825 1.37122 1.00120 0.86521 0.79721 0.83986 0.76981 1.21308 1.20094 1.20200 1.24277 0.95258 0.97281 0.96489 0.87698 0.91209 0.91894 0.82331 0.82043 0.88731 0.89401 0.89817 0.95048 0.97690 0.92786 0.89971 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.45 16 2 O -0.34 -4.94 10.58 -40.71 -0.43 -5.37 16 3 C 0.53 8.16 6.56 34.33 0.23 8.39 16 4 O -0.49 -8.41 16.90 -19.30 -0.33 -8.74 16 5 C -0.20 -2.64 5.77 -104.80 -0.60 -3.24 16 6 C 0.21 2.35 7.29 -38.97 -0.28 2.07 16 7 F -0.12 -1.31 16.83 2.25 0.04 -1.27 16 8 C -0.24 -2.11 9.98 -39.49 -0.39 -2.51 16 9 C 0.20 1.87 7.30 -39.33 -0.29 1.58 16 10 F -0.12 -1.12 17.26 2.25 0.04 -1.08 16 11 C -0.26 -2.70 8.99 -39.41 -0.35 -3.05 16 12 C 0.24 3.14 6.69 -38.70 -0.26 2.88 16 13 O -0.26 -3.96 9.63 -18.65 -0.18 -4.14 16 14 C 0.04 0.50 4.06 -26.20 -0.11 0.39 16 15 C 0.00 0.04 7.52 -7.54 -0.06 -0.02 16 16 N -0.46 -9.56 6.32 -246.10 -1.55 -11.11 16 17 C 0.16 3.92 4.57 -4.98 -0.02 3.90 16 18 C -0.51 -14.18 9.39 -34.44 -0.32 -14.51 16 19 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 22 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.00 -0.06 7.55 -7.55 -0.06 -0.12 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.16 1.02 8.06 -52.48 -0.42 0.59 16 31 H 0.16 1.42 5.88 -52.49 -0.31 1.11 16 32 H 0.10 0.99 5.91 -51.92 -0.31 0.68 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 35 H 0.03 0.84 8.08 -51.93 -0.42 0.43 16 36 H 0.01 0.14 7.30 -51.93 -0.38 -0.24 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.08 1.33 7.42 -51.93 -0.39 0.95 16 39 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -32.36 350.72 -7.26 -39.62 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -4.29 Total: -2.83 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.55 Total: -1.32 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.82 Total: -36.67 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.94 Total: -18.25 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.08 Total: -2.35 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.36 -7.26 -39.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228909092.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.721 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds