Wall clock time and date at job start Tue Mar 31 2020 15:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34780 * 116.99953 * 2 1 4 4 O 1.21545 * 120.00355 * 0.02562 * 3 2 1 5 5 C 1.47117 * 119.99808 * 180.02562 * 3 2 1 6 6 C 1.40109 * 120.19478 * 90.02173 * 5 3 2 7 7 F 1.35096 * 120.06814 * 359.95731 * 6 5 3 8 8 C 1.37996 * 119.85615 * 179.97438 * 6 5 3 9 9 C 1.38720 * 120.25363 * 359.97438 * 8 6 5 10 10 F 1.35097 * 119.80284 * 179.97438 * 9 8 6 11 11 C 1.38440 * 120.39426 * 359.75123 * 9 8 6 12 12 C 1.38494 * 120.13458 * 0.50629 * 11 9 8 13 13 O 1.35651 * 120.12723 * 179.76689 * 12 11 9 14 14 C 1.42896 * 116.99625 * 5.81905 * 13 12 11 15 15 C 1.53516 * 114.17116 * 156.74490 * 14 13 12 16 16 N 1.47484 * 87.92835 * 87.62040 * 15 14 13 17 17 C 1.46905 * 110.99695 * 138.70624 * 16 15 14 18 18 C 1.50696 * 109.47315 * 169.99875 * 17 16 15 19 19 H 1.08007 * 119.99600 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00258 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00104 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47175 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.46808 * 299.99673 * 22 20 18 25 25 H 1.48494 * 109.47407 * 59.99483 * 22 20 18 26 26 C 1.47477 * 87.83584 * 27.01587 * 16 15 14 27 27 H 1.08999 * 109.47526 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46859 * 299.99800 * 1 2 3 29 29 H 1.08995 * 109.47058 * 59.99536 * 1 2 3 30 30 H 1.08004 * 119.87240 * 179.97438 * 8 6 5 31 31 H 1.08001 * 119.93347 * 180.25302 * 11 9 8 32 32 H 1.09008 * 113.26059 * 23.79575 * 14 13 12 33 33 H 1.09000 * 113.47171 * 332.85841 * 15 14 13 34 34 H 1.09000 * 113.53521 * 202.39680 * 15 14 13 35 35 H 1.08999 * 109.47314 * 49.99870 * 17 16 15 36 36 H 1.09002 * 109.46730 * 290.00258 * 17 16 15 37 37 H 0.97002 * 119.99985 * 179.97438 * 21 20 18 38 38 H 1.09001 * 113.47979 * 87.75250 * 26 16 15 39 39 H 1.09005 * 113.47437 * 218.22280 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2203 0.0005 5 6 3.5331 1.2779 -0.0006 6 6 4.2363 1.3154 -1.2118 7 9 3.5666 1.2802 -2.3846 8 6 5.6143 1.3881 -1.2042 9 6 6.3056 1.4247 -0.0021 10 9 7.6547 1.4954 -0.0053 11 6 5.6210 1.3939 1.2008 12 6 4.2384 1.3155 1.2121 13 8 3.5680 1.2806 2.3909 14 6 4.3390 1.4566 3.5810 15 6 3.5311 1.9624 4.7844 16 7 3.2214 0.5554 5.0999 17 6 3.3014 0.3103 6.5461 18 6 2.7460 -1.0559 6.8556 19 1 2.3714 -1.6800 6.0576 20 6 2.7170 -1.5097 8.1572 21 7 3.1745 -0.7504 9.1287 22 14 2.0291 -3.2036 8.5407 23 1 2.1100 -3.4513 10.0027 24 1 0.6110 -3.2721 8.1052 25 1 2.8188 -4.2335 7.8192 26 6 4.4826 0.1861 4.4307 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 6.1566 1.4167 -2.1378 31 1 6.1666 1.4268 2.1323 32 1 5.2731 1.9929 3.4134 33 1 2.6552 2.5475 4.5042 34 1 4.1409 2.4534 5.5427 35 1 2.7218 1.0666 7.0755 36 1 4.3422 0.3605 6.8660 37 1 3.1538 -1.0695 10.0445 38 1 5.3473 0.2028 5.0941 39 1 4.4131 -0.7342 3.8507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228909092.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:56 Heat of formation + Delta-G solvation = -151.093099 kcal Electronic energy + Delta-G solvation = -27601.401783 eV Core-core repulsion = 23146.952888 eV Total energy + Delta-G solvation = -4454.448895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.39555 -50.21242 -42.18346 -41.39424 -40.01846 -37.93115 -37.57666 -35.02794 -32.56084 -31.57827 -30.97551 -28.68881 -27.47058 -26.91390 -25.33454 -24.71495 -23.48655 -22.46644 -21.28709 -19.98878 -19.22871 -18.79119 -18.54121 -18.31387 -17.90902 -17.32574 -17.19719 -17.14918 -16.81001 -16.55979 -16.45628 -16.25243 -15.91356 -15.62380 -15.37487 -15.08616 -14.94317 -14.35502 -14.05331 -13.88002 -13.65903 -13.58038 -13.21990 -13.13456 -12.97726 -12.86017 -12.61433 -12.36412 -12.23022 -11.91713 -11.90985 -11.58405 -11.55538 -11.29515 -10.62200 -10.17415 -9.73646 -9.61213 -8.24003 -6.33639 -0.60522 -0.21315 0.77034 1.39472 1.42099 1.47608 1.50353 1.54116 1.98597 2.38554 2.57853 2.96197 3.08454 3.18192 3.26594 3.41064 3.46877 3.56787 3.69274 3.85490 4.20207 4.21538 4.27535 4.41101 4.41614 4.45968 4.51274 4.59185 4.62116 4.65069 4.73562 4.77593 4.92197 5.02720 5.11095 5.31359 5.56209 5.76755 5.97524 6.07991 6.40758 6.42500 6.79885 7.35933 8.86578 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.003271 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.368778 B = 8559.320063 C = 9770.226866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.528 3.472 4 O -0.518 6.518 5 C -0.218 4.218 6 C 0.206 3.794 7 F -0.119 7.119 8 C -0.212 4.212 9 C 0.207 3.793 10 F -0.113 7.113 11 C -0.248 4.248 12 C 0.223 3.777 13 O -0.286 6.286 14 C 0.062 3.938 15 C -0.001 4.001 16 N -0.490 5.490 17 C 0.172 3.828 18 C -0.528 4.528 19 H 0.054 0.946 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.966 3.034 23 H -0.280 1.280 24 H -0.272 1.272 25 H -0.267 1.267 26 C -0.006 4.006 27 H 0.134 0.866 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.191 0.809 31 H 0.181 0.819 32 H 0.142 0.858 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.002 0.998 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.092 0.908 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.005 4.621 -22.067 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.372 3.628 4 O -0.407 6.407 5 C -0.221 4.221 6 C 0.186 3.814 7 F -0.097 7.097 8 C -0.231 4.231 9 C 0.187 3.813 10 F -0.091 7.091 11 C -0.267 4.267 12 C 0.175 3.825 13 O -0.198 6.198 14 C 0.006 3.994 15 C -0.130 4.130 16 N -0.213 5.213 17 C 0.045 3.955 18 C -0.567 4.567 19 H 0.072 0.928 20 C -0.193 4.193 21 N -0.572 5.572 22 Si 0.790 3.210 23 H -0.205 1.205 24 H -0.198 1.198 25 H -0.192 1.192 26 C -0.135 4.135 27 H 0.152 0.848 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.208 0.792 31 H 0.198 0.802 32 H 0.159 0.841 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.020 0.980 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.939 4.567 -22.028 23.267 hybrid contribution 0.022 -0.350 1.000 1.059 sum 5.961 4.216 -21.028 22.260 Atomic orbital electron populations 1.23642 0.74066 1.06092 1.02770 1.86656 1.25579 1.31770 1.83097 1.20806 0.88866 0.81863 0.71294 1.90848 1.67181 1.36908 1.45724 1.18321 0.90169 1.20893 0.92682 1.16660 0.89416 0.96668 0.78636 1.91578 1.80645 1.93005 1.44445 1.20987 0.91156 1.10338 1.00621 1.16943 0.77256 0.94618 0.92528 1.91606 1.27752 1.92532 1.97258 1.21331 0.92111 1.12532 1.00771 1.18234 0.90073 0.89797 0.84381 1.86179 1.36810 1.84496 1.12269 1.23811 0.95739 0.98226 0.81581 1.24097 1.00373 0.93743 0.94797 1.69034 1.31773 1.07839 1.12644 1.19970 0.94658 0.96177 0.84695 1.21371 1.40713 1.01706 0.92867 0.92807 1.25847 0.95673 1.01781 0.95969 1.70043 1.47701 1.38913 1.00497 0.85491 0.79033 0.79355 0.77096 1.20477 1.19751 1.19186 1.24312 0.93743 0.98694 0.96778 0.84801 0.92384 0.90774 0.79212 0.80169 0.84092 0.89863 0.88251 0.97968 0.98893 0.92539 0.89031 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.57 113.37 1.20 1.79 16 2 O -0.36 -10.31 10.58 -56.92 -0.60 -10.91 16 3 C 0.53 16.45 6.56 70.15 0.46 16.91 16 4 O -0.52 -18.40 16.90 19.69 0.33 -18.07 16 5 C -0.22 -5.68 5.77 -19.98 -0.12 -5.80 16 6 C 0.21 4.22 7.29 22.67 0.17 4.39 16 7 F -0.12 -2.52 16.83 44.97 0.76 -1.76 16 8 C -0.21 -3.07 9.98 22.33 0.22 -2.85 16 9 C 0.21 3.15 7.30 22.43 0.16 3.31 16 10 F -0.11 -1.63 17.26 44.97 0.78 -0.86 16 11 C -0.25 -4.40 8.99 22.38 0.20 -4.20 16 12 C 0.22 5.50 6.69 22.84 0.15 5.66 16 13 O -0.29 -8.61 9.63 -89.66 -0.86 -9.47 16 14 C 0.06 1.65 4.06 30.94 0.13 1.77 16 15 C 0.00 -0.04 7.52 83.58 0.63 0.59 16 16 N -0.49 -20.90 6.32 -932.92 -5.89 -26.80 16 17 C 0.17 8.90 4.57 85.55 0.39 9.29 16 18 C -0.53 -30.25 9.39 25.60 0.24 -30.01 16 19 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 20 C 0.01 0.32 5.46 84.65 0.46 0.79 16 21 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 22 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 C -0.01 -0.20 7.55 83.58 0.63 0.43 16 27 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 31 H 0.18 2.42 5.88 -2.91 -0.02 2.40 16 32 H 0.14 2.43 5.91 -2.38 -0.01 2.42 16 33 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.10 2.92 7.91 -2.39 -0.02 2.91 16 35 H 0.00 0.12 8.08 -2.39 -0.02 0.11 16 36 H -0.01 -0.35 7.30 -2.39 -0.02 -0.37 16 37 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.09 2.87 7.42 -2.39 -0.02 2.86 16 39 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 Total: -1.00 -72.18 350.72 2.85 -69.33 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.10 Total: 4.98 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.93 Total: 2.08 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -5.61 Total: -81.63 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -1.13 Total: -38.45 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 1.53 Total: -2.62 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.18 2.85 -69.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228909092.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.764 kcal (2) G-P(sol) polarization free energy of solvation -72.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds