Wall clock time and date at job start Tue Mar 31 2020 15:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34738 * 116.99753 * 2 1 4 4 O 1.21503 * 120.00657 * 359.97438 * 3 2 1 5 5 C 1.47455 * 119.99926 * 179.97438 * 3 2 1 6 6 C 1.39813 * 120.12493 * 359.97438 * 5 3 2 7 7 C 1.37757 * 119.98929 * 180.02562 * 6 5 3 8 8 C 1.38676 * 120.24655 * 359.97438 * 7 6 5 9 9 F 1.35096 * 119.86941 * 180.02562 * 8 7 6 10 10 C 1.38884 * 120.25696 * 0.02562 * 8 7 6 11 11 O 1.36020 * 119.99897 * 179.97438 * 10 8 7 12 12 C 1.42900 * 116.99862 * 89.99774 * 11 10 8 13 13 H 1.09003 * 110.64381 * 330.70454 * 12 11 10 14 14 C 1.55165 * 110.72146 * 207.56014 * 12 11 10 15 15 C 1.54904 * 101.58246 * 206.13544 * 14 12 11 16 16 N 1.47426 * 104.83562 * 37.01075 * 15 14 12 17 17 C 1.36929 * 125.65336 * 155.83566 * 16 15 14 18 18 H 1.07993 * 120.00266 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99536 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00139 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99814 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46866 * 60.00218 * 21 19 17 23 23 H 1.48496 * 109.46787 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47041 * 300.00495 * 21 19 17 25 25 C 1.47323 * 108.73248 * 335.71509 * 16 15 14 26 26 C 1.38628 * 120.00729 * 359.76191 * 10 8 7 27 27 F 1.35092 * 120.12636 * 180.25946 * 26 10 8 28 28 H 1.09001 * 109.47157 * 59.99912 * 1 2 3 29 29 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47070 * 300.00070 * 1 2 3 31 31 H 1.07999 * 120.00340 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.87663 * 180.02562 * 7 6 5 33 33 H 1.08997 * 111.00166 * 324.21482 * 14 12 11 34 34 H 1.09002 * 111.00089 * 88.05825 * 14 12 11 35 35 H 1.08995 * 110.36599 * 155.84817 * 15 14 12 36 36 H 1.09002 * 110.36447 * 278.06273 * 15 14 12 37 37 H 0.97003 * 120.00185 * 179.97438 * 20 19 17 38 38 H 1.09003 * 110.06409 * 241.87559 * 25 16 15 39 39 H 1.08998 * 109.84916 * 120.61029 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5362 1.2778 0.0006 6 6 4.3003 0.1069 0.0017 7 6 5.6758 0.1823 0.0027 8 6 6.3077 1.4167 0.0022 9 9 7.6571 1.4817 0.0027 10 6 5.5588 2.5863 0.0011 11 8 6.1840 3.7942 0.0011 12 6 6.4833 4.3698 -1.2721 13 1 6.6430 3.5911 -2.0179 14 6 7.7211 5.3006 -1.1766 15 6 7.4634 6.2819 -2.3472 16 7 6.0040 6.4909 -2.3502 17 6 5.3553 7.5834 -2.8606 18 1 4.2780 7.6423 -2.8138 19 6 6.0825 8.6153 -3.4380 20 7 7.3954 8.5432 -3.4954 21 14 5.1974 10.1055 -4.1348 22 1 4.4244 10.7714 -3.0558 23 1 6.1927 11.0569 -4.6909 24 1 4.2716 9.6724 -5.2121 25 6 5.3583 5.3284 -1.7160 26 6 4.1740 2.5228 -0.0044 27 9 3.4431 3.6589 -0.0108 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8122 -0.8565 0.0017 32 1 6.2642 -0.7233 0.0031 33 1 7.7412 5.8272 -0.2225 34 1 8.6436 4.7410 -1.3317 35 1 7.9812 7.2249 -2.1725 36 1 7.7872 5.8410 -3.2900 37 1 7.9036 9.2641 -3.8992 38 1 4.7050 4.8276 -2.4306 39 1 4.7833 5.6521 -0.8485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233910533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:23 Heat of formation + Delta-G solvation = -143.406073 kcal Electronic energy + Delta-G solvation = -28088.057694 eV Core-core repulsion = 23633.942133 eV Total energy + Delta-G solvation = -4454.115560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -49.28839 -49.07146 -40.75106 -39.64348 -38.06689 -36.68098 -36.14728 -32.37899 -31.32950 -30.45569 -29.14865 -27.99219 -27.22809 -24.68594 -24.37047 -23.20497 -21.61219 -20.44928 -20.21477 -18.79335 -18.35225 -17.76593 -17.17261 -16.99420 -16.83770 -16.75150 -16.18063 -15.87673 -15.42653 -14.84322 -14.62659 -14.53474 -14.48575 -14.30999 -13.60940 -13.50288 -13.39216 -13.21353 -12.52848 -12.46615 -12.28486 -12.14035 -11.99195 -11.68405 -11.38438 -11.11381 -10.98867 -10.83817 -10.77241 -10.52295 -10.14997 -9.83523 -9.66098 -9.58008 -9.24132 -9.05761 -8.65583 -6.86453 -5.65946 -3.07904 0.01192 0.53163 2.01801 2.22515 2.94232 3.29717 3.42974 3.46412 3.48161 3.65740 3.91511 4.16702 4.34380 4.46557 4.49956 4.80255 4.89148 4.96859 5.17999 5.23327 5.25302 5.37690 5.40382 5.45689 5.49521 5.56177 5.59612 5.74981 5.94721 6.04181 6.28610 6.44171 6.50275 6.57647 6.70844 7.39559 7.42808 7.47830 7.61598 7.81809 8.33060 9.20863 9.80679 10.44171 11.38553 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.003580 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.063174 B = 7818.733939 C = 9518.867282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.510 3.490 4 O -0.484 6.484 5 C -0.171 4.171 6 C -0.014 4.014 7 C -0.169 4.169 8 C 0.149 3.851 9 F -0.113 7.113 10 C 0.025 3.975 11 O -0.305 6.305 12 C 0.074 3.926 13 H 0.069 0.931 14 C -0.135 4.135 15 C 0.153 3.847 16 N -0.601 5.601 17 C -0.222 4.222 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.925 5.925 21 Si 0.917 3.083 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.118 3.882 26 C 0.181 3.819 27 F -0.089 7.089 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.016 0.984 37 H 0.254 0.746 38 H 0.024 0.976 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 -22.839 8.245 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.353 3.647 4 O -0.372 6.372 5 C -0.173 4.173 6 C -0.032 4.032 7 C -0.188 4.188 8 C 0.128 3.872 9 F -0.091 7.091 10 C -0.022 4.022 11 O -0.221 6.221 12 C 0.019 3.981 13 H 0.087 0.913 14 C -0.173 4.173 15 C 0.029 3.971 16 N -0.328 5.328 17 C -0.350 4.350 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.573 5.573 21 Si 0.748 3.252 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.212 1.212 25 C -0.009 4.009 26 C 0.160 3.840 27 F -0.067 7.067 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.178 0.822 32 H 0.174 0.826 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.069 -22.153 8.279 24.416 hybrid contribution -0.609 0.876 -0.582 1.215 sum -6.678 -21.277 7.697 23.591 Atomic orbital electron populations 1.23323 0.75447 1.03862 1.02996 1.86496 1.23914 1.32113 1.84637 1.20641 0.88260 0.81957 0.73804 1.90961 1.66342 1.35640 1.44216 1.19060 0.90716 0.92982 1.14584 1.21158 0.92374 0.97834 0.91875 1.21111 0.95117 0.96630 1.05963 1.18119 0.77769 0.93123 0.98181 1.91580 1.27663 1.97103 1.92719 1.18523 0.88825 0.87330 1.07548 1.86291 1.75694 1.29002 1.31134 1.23856 0.97885 0.94777 0.81625 0.91277 1.23223 0.94203 0.97296 1.02625 1.21995 0.85431 0.98253 0.91462 1.44434 1.02041 1.17156 1.69175 1.19064 0.91117 0.94195 1.30656 0.90374 1.24791 0.95740 0.98842 1.01223 1.69742 1.04259 1.33209 1.50121 0.86106 0.78183 0.82147 0.78808 1.21045 1.21510 1.21179 1.21766 0.93612 0.89125 0.96367 1.17834 0.88016 0.82022 0.96163 1.91684 1.76092 1.47111 1.91812 0.91559 0.87770 0.91636 0.82210 0.82598 0.90643 0.91445 0.86778 0.96625 0.93576 0.95860 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.35 -3.35 9.81 -40.59 -0.40 -3.74 16 3 C 0.51 6.40 7.89 34.48 0.27 6.67 16 4 O -0.48 -7.78 15.12 -19.27 -0.29 -8.07 16 5 C -0.17 -2.02 5.88 -104.94 -0.62 -2.64 16 6 C -0.01 -0.11 9.61 -39.17 -0.38 -0.49 16 7 C -0.17 -1.37 10.00 -39.60 -0.40 -1.77 16 8 C 0.15 1.77 7.31 -39.18 -0.29 1.48 16 9 F -0.11 -1.44 17.10 2.25 0.04 -1.40 16 10 C 0.02 0.37 5.61 -39.20 -0.22 0.15 16 11 O -0.30 -5.51 9.50 -19.80 -0.19 -5.70 16 12 C 0.07 1.43 3.48 -24.89 -0.09 1.34 16 13 H 0.07 1.24 7.95 -51.93 -0.41 0.83 16 14 C -0.13 -2.70 6.81 -24.58 -0.17 -2.87 16 15 C 0.15 3.81 5.89 -2.53 -0.01 3.79 16 16 N -0.60 -16.15 3.40 -169.83 -0.58 -16.73 16 17 C -0.22 -6.43 10.28 -15.06 -0.15 -6.58 16 18 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -27.22 10.09 55.49 0.56 -26.66 16 21 Si 0.92 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.12 2.69 6.58 -2.90 -0.02 2.68 16 26 C 0.18 2.70 7.29 -38.82 -0.28 2.41 16 27 F -0.09 -1.62 14.46 2.25 0.03 -1.59 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.16 0.78 7.60 -52.49 -0.40 0.38 16 32 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.11 3.14 5.87 -51.93 -0.30 2.84 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.04 0.99 7.60 -51.93 -0.39 0.59 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -33.70 343.25 -6.49 -40.19 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -4.44 Total: -4.07 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.38 Total: 5.08 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.02 Total: -43.39 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.88 Total: -17.51 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.07 Total: -2.99 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.70 -6.49 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233910533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.217 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds