Wall clock time and date at job start Tue Mar 31 2020 15:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34738 * 116.99753 * 2 1 4 4 O 1.21503 * 120.00657 * 359.97438 * 3 2 1 5 5 C 1.47455 * 119.99926 * 179.97438 * 3 2 1 6 6 C 1.39813 * 120.12493 * 359.97438 * 5 3 2 7 7 C 1.37757 * 119.98929 * 180.02562 * 6 5 3 8 8 C 1.38676 * 120.24655 * 359.97438 * 7 6 5 9 9 F 1.35096 * 119.86941 * 180.02562 * 8 7 6 10 10 C 1.38884 * 120.25696 * 0.02562 * 8 7 6 11 11 O 1.36020 * 119.99897 * 179.97438 * 10 8 7 12 12 C 1.42900 * 116.99862 * 89.99774 * 11 10 8 13 13 H 1.09003 * 110.64381 * 330.70454 * 12 11 10 14 14 C 1.55165 * 110.72146 * 207.56014 * 12 11 10 15 15 C 1.54904 * 101.58246 * 206.13544 * 14 12 11 16 16 N 1.47426 * 104.83562 * 37.01075 * 15 14 12 17 17 C 1.36929 * 125.65336 * 155.83566 * 16 15 14 18 18 H 1.07993 * 120.00266 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99536 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00139 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99814 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46866 * 60.00218 * 21 19 17 23 23 H 1.48496 * 109.46787 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47041 * 300.00495 * 21 19 17 25 25 C 1.47323 * 108.73248 * 335.71509 * 16 15 14 26 26 C 1.38628 * 120.00729 * 359.76191 * 10 8 7 27 27 F 1.35092 * 120.12636 * 180.25946 * 26 10 8 28 28 H 1.09001 * 109.47157 * 59.99912 * 1 2 3 29 29 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47070 * 300.00070 * 1 2 3 31 31 H 1.07999 * 120.00340 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.87663 * 180.02562 * 7 6 5 33 33 H 1.08997 * 111.00166 * 324.21482 * 14 12 11 34 34 H 1.09002 * 111.00089 * 88.05825 * 14 12 11 35 35 H 1.08995 * 110.36599 * 155.84817 * 15 14 12 36 36 H 1.09002 * 110.36447 * 278.06273 * 15 14 12 37 37 H 0.97003 * 120.00185 * 179.97438 * 20 19 17 38 38 H 1.09003 * 110.06409 * 241.87559 * 25 16 15 39 39 H 1.08998 * 109.84916 * 120.61029 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5362 1.2778 0.0006 6 6 4.3003 0.1069 0.0017 7 6 5.6758 0.1823 0.0027 8 6 6.3077 1.4167 0.0022 9 9 7.6571 1.4817 0.0027 10 6 5.5588 2.5863 0.0011 11 8 6.1840 3.7942 0.0011 12 6 6.4833 4.3698 -1.2721 13 1 6.6430 3.5911 -2.0179 14 6 7.7211 5.3006 -1.1766 15 6 7.4634 6.2819 -2.3472 16 7 6.0040 6.4909 -2.3502 17 6 5.3553 7.5834 -2.8606 18 1 4.2780 7.6423 -2.8138 19 6 6.0825 8.6153 -3.4380 20 7 7.3954 8.5432 -3.4954 21 14 5.1974 10.1055 -4.1348 22 1 4.4244 10.7714 -3.0558 23 1 6.1927 11.0569 -4.6909 24 1 4.2716 9.6724 -5.2121 25 6 5.3583 5.3284 -1.7160 26 6 4.1740 2.5228 -0.0044 27 9 3.4431 3.6589 -0.0108 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8122 -0.8565 0.0017 32 1 6.2642 -0.7233 0.0031 33 1 7.7412 5.8272 -0.2225 34 1 8.6436 4.7410 -1.3317 35 1 7.9812 7.2249 -2.1725 36 1 7.7872 5.8410 -3.2900 37 1 7.9036 9.2641 -3.8992 38 1 4.7050 4.8276 -2.4306 39 1 4.7833 5.6521 -0.8485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233910533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:22 Heat of formation + Delta-G solvation = -164.373190 kcal Electronic energy + Delta-G solvation = -28088.966896 eV Core-core repulsion = 23633.942133 eV Total energy + Delta-G solvation = -4455.024763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.27067 -50.21791 -41.67087 -40.85812 -39.31154 -37.81121 -37.55119 -34.38816 -32.25589 -31.69424 -30.89523 -29.10112 -28.58311 -26.57842 -25.37675 -24.21193 -22.67728 -22.18378 -21.88773 -19.89293 -19.31010 -19.11241 -18.74917 -18.18982 -17.81755 -17.72995 -17.22254 -16.91672 -16.77262 -16.49685 -16.24014 -15.96943 -15.58544 -15.21035 -15.04427 -14.74558 -14.44161 -14.39372 -14.18265 -13.78396 -13.52851 -13.35391 -13.13485 -13.02550 -12.94494 -12.78063 -12.61566 -12.33177 -12.09369 -11.89290 -11.87259 -11.85391 -11.50656 -11.13681 -10.81557 -10.15061 -10.06645 -9.00853 -7.84648 -5.30803 -0.89345 -0.40454 1.10262 1.39730 1.43507 1.47507 1.54118 1.98550 2.32957 2.43934 2.53434 3.00299 3.25587 3.38549 3.47653 3.54360 3.62337 3.71387 3.88403 3.93136 4.07554 4.31049 4.33834 4.44306 4.49672 4.52010 4.63497 4.71412 4.76848 4.78374 4.80170 4.87730 4.91513 5.14664 5.32062 5.37249 5.50500 5.68923 6.13653 6.22688 6.50175 7.02775 7.66298 8.29834 9.17456 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.003580 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.063174 B = 7818.733939 C = 9518.867282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.341 6.341 3 C 0.512 3.488 4 O -0.531 6.531 5 C -0.176 4.176 6 C 0.018 3.982 7 C -0.138 4.138 8 C 0.149 3.851 9 F -0.117 7.117 10 C -0.011 4.011 11 O -0.318 6.318 12 C 0.090 3.910 13 H 0.087 0.913 14 C -0.120 4.120 15 C 0.156 3.844 16 N -0.623 5.623 17 C -0.251 4.251 18 H 0.074 0.926 19 C -0.060 4.060 20 N -0.946 5.946 21 Si 0.985 3.015 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.278 1.278 25 C 0.119 3.881 26 C 0.149 3.851 27 F -0.122 7.122 28 H 0.058 0.942 29 H 0.145 0.855 30 H 0.061 0.939 31 H 0.206 0.794 32 H 0.206 0.794 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.002 0.998 37 H 0.252 0.748 38 H 0.019 0.981 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 -26.567 8.510 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.256 6.256 3 C 0.357 3.643 4 O -0.422 6.422 5 C -0.179 4.179 6 C 0.000 4.000 7 C -0.157 4.157 8 C 0.129 3.871 9 F -0.095 7.095 10 C -0.057 4.057 11 O -0.234 6.234 12 C 0.035 3.965 13 H 0.105 0.895 14 C -0.159 4.159 15 C 0.031 3.969 16 N -0.351 5.351 17 C -0.379 4.379 18 H 0.092 0.908 19 C -0.253 4.253 20 N -0.594 5.594 21 Si 0.812 3.188 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.204 1.204 25 C -0.007 4.007 26 C 0.128 3.872 27 F -0.100 7.100 28 H 0.077 0.923 29 H 0.163 0.837 30 H 0.080 0.920 31 H 0.223 0.777 32 H 0.223 0.777 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.020 0.980 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.087 -25.933 8.563 27.981 hybrid contribution -0.690 1.837 -0.621 2.058 sum -6.777 -24.096 7.942 26.261 Atomic orbital electron populations 1.23662 0.73841 1.06358 1.02531 1.86486 1.25369 1.30012 1.83774 1.20855 0.88586 0.82178 0.72664 1.90948 1.67347 1.37367 1.46507 1.19219 0.90769 0.93060 1.14805 1.21713 0.92174 0.97959 0.88143 1.21631 0.95200 0.96475 1.02360 1.18318 0.77455 0.93339 0.98021 1.91574 1.28022 1.97157 1.92757 1.18806 0.89059 0.87094 1.10698 1.86250 1.76144 1.31085 1.29936 1.23508 0.95494 0.94456 0.83077 0.89532 1.23023 0.96112 0.96621 1.00098 1.21791 0.84260 0.98053 0.92753 1.44736 1.03211 1.17852 1.69284 1.19378 0.91383 0.95602 1.31547 0.90796 1.25657 0.96622 1.01465 1.01517 1.69979 1.05375 1.33781 1.50307 0.85071 0.77151 0.78444 0.78142 1.20438 1.21099 1.20368 1.21801 0.94782 0.88892 0.95213 1.18222 0.88225 0.82287 0.98455 1.91594 1.76843 1.49032 1.92537 0.92283 0.83674 0.92024 0.77665 0.77750 0.91219 0.88017 0.89762 0.97999 0.93834 0.96334 0.95865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.34 -5.49 9.81 -56.48 -0.55 -6.05 16 3 C 0.51 12.39 7.89 70.25 0.55 12.94 16 4 O -0.53 -17.65 15.12 19.83 0.30 -17.35 16 5 C -0.18 -3.88 5.88 -20.07 -0.12 -4.00 16 6 C 0.02 0.20 9.61 22.54 0.22 0.41 16 7 C -0.14 -1.51 10.00 22.26 0.22 -1.29 16 8 C 0.15 3.13 7.31 22.53 0.16 3.29 16 9 F -0.12 -2.65 17.10 44.97 0.77 -1.89 16 10 C -0.01 -0.31 5.61 22.52 0.13 -0.19 16 11 O -0.32 -11.66 9.50 -93.77 -0.89 -12.56 16 12 C 0.09 3.55 3.48 31.79 0.11 3.66 16 13 H 0.09 3.06 7.95 -2.39 -0.02 3.05 16 14 C -0.12 -4.86 6.81 31.99 0.22 -4.64 16 15 C 0.16 8.03 5.89 86.85 0.51 8.54 16 16 N -0.62 -35.00 3.40 -691.24 -2.35 -37.35 16 17 C -0.25 -15.08 10.28 84.04 0.86 -14.22 16 18 H 0.07 4.36 7.83 -2.91 -0.02 4.33 16 19 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 20 N -0.95 -57.29 10.09 21.65 0.22 -57.07 16 21 Si 0.98 47.25 29.55 68.60 2.03 49.27 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 C 0.12 5.73 6.58 86.67 0.57 6.30 16 26 C 0.15 4.51 7.29 22.76 0.17 4.68 16 27 F -0.12 -4.76 14.46 44.97 0.65 -4.11 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.15 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.21 0.53 7.60 -2.91 -0.02 0.51 16 32 H 0.21 0.40 8.06 -2.91 -0.02 0.37 16 33 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.10 3.39 8.14 -2.39 -0.02 3.38 16 35 H 0.08 4.85 5.87 -2.39 -0.01 4.84 16 36 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.02 1.19 7.60 -2.39 -0.02 1.17 16 Total: -1.00 -79.49 343.25 6.53 -72.95 By element: Atomic # 1 Polarization: -0.94 SS G_CDS: 1.09 Total: 0.15 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 5.27 Total: 13.99 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -2.13 Total: -94.42 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -1.15 Total: -35.95 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 1.42 Total: -6.00 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -79.49 6.53 -72.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233910533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.420 kcal (2) G-P(sol) polarization free energy of solvation -79.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds