Wall clock time and date at job start Tue Mar 31 2020 15:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34740 * 116.99876 * 2 1 4 4 O 1.21504 * 120.00325 * 359.97438 * 3 2 1 5 5 C 1.47455 * 120.00199 * 180.02562 * 3 2 1 6 6 C 1.39811 * 120.12309 * 359.97438 * 5 3 2 7 7 C 1.37755 * 119.99010 * 179.97438 * 6 5 3 8 8 C 1.38677 * 120.24503 * 0.28151 * 7 6 5 9 9 F 1.35098 * 119.86620 * 179.70109 * 8 7 6 10 10 C 1.38885 * 120.25230 * 359.44230 * 8 7 6 11 11 O 1.36028 * 119.99410 * 180.29787 * 10 8 7 12 12 C 1.42894 * 117.00164 * 270.25168 * 11 10 8 13 13 H 1.09004 * 110.64160 * 31.69505 * 12 11 10 14 14 C 1.55156 * 110.72035 * 155.02121 * 12 11 10 15 15 C 1.54911 * 101.58283 * 153.86814 * 14 12 11 16 16 N 1.47425 * 104.83101 * 322.98991 * 15 14 12 17 17 C 1.36940 * 125.65308 * 204.08892 * 16 15 14 18 18 H 1.07997 * 120.00116 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99477 * 0.04855 * 17 16 15 20 20 N 1.31618 * 120.00310 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47261 * 90.00132 * 21 19 17 23 23 H 1.48505 * 109.46943 * 209.99895 * 21 19 17 24 24 H 1.48503 * 109.47317 * 329.99775 * 21 19 17 25 25 C 1.47026 * 108.70116 * 24.13347 * 16 15 14 26 26 C 1.38620 * 120.01055 * 0.55494 * 10 8 7 27 27 F 1.35095 * 120.12489 * 179.74502 * 26 10 8 28 28 H 1.09006 * 109.47019 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47411 * 299.99908 * 1 2 3 30 30 H 1.09002 * 109.47359 * 60.00303 * 1 2 3 31 31 H 1.08002 * 120.00756 * 359.95934 * 6 5 3 32 32 H 1.08002 * 119.87411 * 179.97438 * 7 6 5 33 33 H 1.08994 * 111.01096 * 271.94548 * 14 12 11 34 34 H 1.09006 * 111.00300 * 35.79375 * 14 12 11 35 35 H 1.09009 * 110.36468 * 204.15909 * 15 14 12 36 36 H 1.08993 * 110.36585 * 81.83435 * 15 14 12 37 37 H 0.96998 * 120.00515 * 180.02562 * 20 19 17 38 38 H 1.09007 * 109.87822 * 239.51719 * 25 16 15 39 39 H 1.08995 * 109.88409 * 118.35410 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5362 1.2778 -0.0006 6 6 4.3003 0.1069 -0.0006 7 6 5.6758 0.1823 -0.0016 8 6 6.3077 1.4167 0.0032 9 9 7.6571 1.4817 0.0082 10 6 5.5587 2.5863 -0.0026 11 8 6.1840 3.7943 -0.0039 12 6 6.4831 4.3714 1.2686 13 1 6.6842 3.5938 2.0055 14 6 7.6806 5.3518 1.1589 15 6 7.4052 6.3128 2.3423 16 7 5.9390 6.4629 2.3732 17 6 5.2563 7.5239 2.9056 18 1 4.1767 7.5394 2.8792 19 6 5.9519 8.5795 3.4789 20 7 7.2675 8.5605 3.5111 21 14 5.0207 10.0271 4.2045 22 1 4.7342 9.7633 5.6375 23 1 5.8444 11.2568 4.0827 24 1 3.7433 10.2123 3.4702 25 6 5.3310 5.2842 1.7386 26 6 4.1739 2.5227 -0.0015 27 9 3.4431 3.6589 -0.0019 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.8122 -0.8565 0.0005 32 1 6.2642 -0.7234 -0.0012 33 1 8.6275 4.8287 1.2926 34 1 7.6622 5.8864 0.2091 35 1 7.8816 7.2774 2.1664 36 1 7.7618 5.8772 3.2756 37 1 7.7537 9.2980 3.9120 38 1 4.7298 5.5926 0.8831 39 1 4.7089 4.7544 2.4598 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233910534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:27 Heat of formation + Delta-G solvation = -143.571875 kcal Electronic energy + Delta-G solvation = -28110.620373 eV Core-core repulsion = 23656.497623 eV Total energy + Delta-G solvation = -4454.122750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -49.28784 -49.06715 -40.74689 -39.64446 -38.07306 -36.67716 -36.15993 -32.38140 -31.32666 -30.45801 -29.15807 -27.98748 -27.22485 -24.69233 -24.37165 -23.20185 -21.61357 -20.45191 -20.21379 -18.78564 -18.34981 -17.75597 -17.17931 -16.99727 -16.82820 -16.74753 -16.17887 -15.87540 -15.42366 -14.85133 -14.62436 -14.54897 -14.49068 -14.31127 -13.60512 -13.49625 -13.38911 -13.21209 -12.52322 -12.47039 -12.28162 -12.14353 -12.01003 -11.68103 -11.36334 -11.10940 -10.98431 -10.83417 -10.79494 -10.52402 -10.12157 -9.83707 -9.67399 -9.57957 -9.23827 -9.05415 -8.66096 -6.86447 -5.66371 -3.08319 0.01553 0.53472 2.02169 2.22943 2.94570 3.30074 3.41859 3.46660 3.49158 3.65935 3.91854 4.17020 4.34701 4.46847 4.49765 4.80636 4.89558 4.97066 5.18281 5.23597 5.25371 5.37729 5.40519 5.45977 5.49421 5.56499 5.59674 5.75015 5.95063 6.04460 6.28597 6.43851 6.50232 6.57376 6.71018 7.39959 7.42754 7.47601 7.62125 7.81542 8.32844 9.20622 9.80623 10.43873 11.38211 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.003625 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.846155 B = 7721.306593 C = 9445.588417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.510 3.490 4 O -0.484 6.484 5 C -0.171 4.171 6 C -0.014 4.014 7 C -0.169 4.169 8 C 0.148 3.852 9 F -0.113 7.113 10 C 0.025 3.975 11 O -0.305 6.305 12 C 0.073 3.927 13 H 0.069 0.931 14 C -0.134 4.134 15 C 0.153 3.847 16 N -0.601 5.601 17 C -0.221 4.221 18 H 0.079 0.921 19 C -0.011 4.011 20 N -0.924 5.924 21 Si 0.917 3.083 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.117 3.883 26 C 0.181 3.819 27 F -0.089 7.089 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.016 0.984 37 H 0.253 0.747 38 H 0.041 0.959 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 -22.768 -8.369 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.353 3.647 4 O -0.371 6.371 5 C -0.173 4.173 6 C -0.032 4.032 7 C -0.188 4.188 8 C 0.128 3.872 9 F -0.091 7.091 10 C -0.022 4.022 11 O -0.221 6.221 12 C 0.018 3.982 13 H 0.087 0.913 14 C -0.173 4.173 15 C 0.028 3.972 16 N -0.328 5.328 17 C -0.350 4.350 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.573 5.573 21 Si 0.747 3.253 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.010 4.010 26 C 0.160 3.840 27 F -0.067 7.067 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.178 0.822 32 H 0.174 0.826 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.756 -22.081 -8.413 24.321 hybrid contribution -0.616 0.851 0.610 1.215 sum -6.372 -21.230 -7.803 23.499 Atomic orbital electron populations 1.23323 0.75450 1.03859 1.02997 1.86495 1.23911 1.32115 1.84642 1.20642 0.88259 0.81958 0.73810 1.90962 1.66337 1.35641 1.44202 1.19057 0.90718 0.92981 1.14575 1.21158 0.92374 0.97833 0.91879 1.21110 0.95117 0.96628 1.05968 1.18121 0.77765 0.93131 0.98203 1.91579 1.27670 1.97105 1.92729 1.18521 0.88835 0.87317 1.07545 1.86292 1.75698 1.29005 1.31132 1.23852 0.97841 0.94782 0.81675 0.91256 1.23213 0.94575 0.96856 1.02622 1.22009 0.84975 0.98868 0.91320 1.44376 1.01927 1.17954 1.68531 1.19110 0.90686 0.95054 1.30109 0.90323 1.24792 0.95777 0.98800 1.01246 1.69751 1.04907 1.32429 1.50208 0.86030 0.78562 0.81787 0.78896 1.21598 1.21573 1.20591 1.21737 0.93753 0.89200 0.96266 1.17826 0.88012 0.82026 0.96136 1.91685 1.76093 1.47093 1.91805 0.87773 0.91557 0.91638 0.82210 0.82603 0.91417 0.90633 0.86765 0.96595 0.93626 0.94073 0.95967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.32 16 2 O -0.35 -3.36 9.81 -40.60 -0.40 -3.76 16 3 C 0.51 6.43 7.89 34.49 0.27 6.70 16 4 O -0.48 -7.81 15.12 -19.27 -0.29 -8.10 16 5 C -0.17 -2.03 5.88 -104.94 -0.62 -2.65 16 6 C -0.01 -0.11 9.61 -39.17 -0.38 -0.49 16 7 C -0.17 -1.38 10.00 -39.60 -0.40 -1.78 16 8 C 0.15 1.77 7.31 -39.18 -0.29 1.48 16 9 F -0.11 -1.44 17.10 2.25 0.04 -1.40 16 10 C 0.02 0.37 5.62 -39.20 -0.22 0.15 16 11 O -0.31 -5.51 9.50 -19.83 -0.19 -5.70 16 12 C 0.07 1.42 3.47 -24.90 -0.09 1.34 16 13 H 0.07 1.24 7.97 -51.93 -0.41 0.83 16 14 C -0.13 -2.69 6.81 -24.58 -0.17 -2.86 16 15 C 0.15 3.80 5.89 -2.53 -0.01 3.78 16 16 N -0.60 -16.15 3.39 -170.07 -0.58 -16.72 16 17 C -0.22 -6.41 10.27 -15.06 -0.15 -6.56 16 18 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 20 N -0.92 -27.20 10.09 55.49 0.56 -26.64 16 21 Si 0.92 22.55 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C 0.12 2.68 6.53 -3.06 -0.02 2.66 16 26 C 0.18 2.71 7.29 -38.83 -0.28 2.43 16 27 F -0.09 -1.62 14.23 2.25 0.03 -1.59 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.16 0.78 7.60 -52.49 -0.40 0.39 16 32 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.11 3.14 5.87 -51.92 -0.31 2.84 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.04 0.99 7.40 -51.93 -0.38 0.60 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -33.72 342.78 -6.49 -40.21 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -4.43 Total: -4.09 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -1.38 Total: 5.12 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.02 Total: -43.37 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.88 Total: -17.56 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.07 Total: -2.99 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.72 -6.49 -40.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233910534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.363 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds