Wall clock time and date at job start Tue Mar 31 2020 15:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34740 * 116.99876 * 2 1 4 4 O 1.21504 * 120.00325 * 359.97438 * 3 2 1 5 5 C 1.47455 * 120.00199 * 180.02562 * 3 2 1 6 6 C 1.39811 * 120.12309 * 359.97438 * 5 3 2 7 7 C 1.37755 * 119.99010 * 179.97438 * 6 5 3 8 8 C 1.38677 * 120.24503 * 0.28151 * 7 6 5 9 9 F 1.35098 * 119.86620 * 179.70109 * 8 7 6 10 10 C 1.38885 * 120.25230 * 359.44230 * 8 7 6 11 11 O 1.36028 * 119.99410 * 180.29787 * 10 8 7 12 12 C 1.42894 * 117.00164 * 270.25168 * 11 10 8 13 13 H 1.09004 * 110.64160 * 31.69505 * 12 11 10 14 14 C 1.55156 * 110.72035 * 155.02121 * 12 11 10 15 15 C 1.54911 * 101.58283 * 153.86814 * 14 12 11 16 16 N 1.47425 * 104.83101 * 322.98991 * 15 14 12 17 17 C 1.36940 * 125.65308 * 204.08892 * 16 15 14 18 18 H 1.07997 * 120.00116 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99477 * 0.04855 * 17 16 15 20 20 N 1.31618 * 120.00310 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47261 * 90.00132 * 21 19 17 23 23 H 1.48505 * 109.46943 * 209.99895 * 21 19 17 24 24 H 1.48503 * 109.47317 * 329.99775 * 21 19 17 25 25 C 1.47026 * 108.70116 * 24.13347 * 16 15 14 26 26 C 1.38620 * 120.01055 * 0.55494 * 10 8 7 27 27 F 1.35095 * 120.12489 * 179.74502 * 26 10 8 28 28 H 1.09006 * 109.47019 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47411 * 299.99908 * 1 2 3 30 30 H 1.09002 * 109.47359 * 60.00303 * 1 2 3 31 31 H 1.08002 * 120.00756 * 359.95934 * 6 5 3 32 32 H 1.08002 * 119.87411 * 179.97438 * 7 6 5 33 33 H 1.08994 * 111.01096 * 271.94548 * 14 12 11 34 34 H 1.09006 * 111.00300 * 35.79375 * 14 12 11 35 35 H 1.09009 * 110.36468 * 204.15909 * 15 14 12 36 36 H 1.08993 * 110.36585 * 81.83435 * 15 14 12 37 37 H 0.96998 * 120.00515 * 180.02562 * 20 19 17 38 38 H 1.09007 * 109.87822 * 239.51719 * 25 16 15 39 39 H 1.08995 * 109.88409 * 118.35410 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5362 1.2778 -0.0006 6 6 4.3003 0.1069 -0.0006 7 6 5.6758 0.1823 -0.0016 8 6 6.3077 1.4167 0.0032 9 9 7.6571 1.4817 0.0082 10 6 5.5587 2.5863 -0.0026 11 8 6.1840 3.7943 -0.0039 12 6 6.4831 4.3714 1.2686 13 1 6.6842 3.5938 2.0055 14 6 7.6806 5.3518 1.1589 15 6 7.4052 6.3128 2.3423 16 7 5.9390 6.4629 2.3732 17 6 5.2563 7.5239 2.9056 18 1 4.1767 7.5394 2.8792 19 6 5.9519 8.5795 3.4789 20 7 7.2675 8.5605 3.5111 21 14 5.0207 10.0271 4.2045 22 1 4.7342 9.7633 5.6375 23 1 5.8444 11.2568 4.0827 24 1 3.7433 10.2123 3.4702 25 6 5.3310 5.2842 1.7386 26 6 4.1739 2.5227 -0.0015 27 9 3.4431 3.6589 -0.0019 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.8122 -0.8565 0.0005 32 1 6.2642 -0.7234 -0.0012 33 1 8.6275 4.8287 1.2926 34 1 7.6622 5.8864 0.2091 35 1 7.8816 7.2774 2.1664 36 1 7.7618 5.8772 3.2756 37 1 7.7537 9.2980 3.9120 38 1 4.7298 5.5926 0.8831 39 1 4.7089 4.7544 2.4598 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233910534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:26 Heat of formation + Delta-G solvation = -164.576979 kcal Electronic energy + Delta-G solvation = -28111.531223 eV Core-core repulsion = 23656.497623 eV Total energy + Delta-G solvation = -4455.033600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.27129 -50.21866 -41.67152 -40.86370 -39.32134 -37.82011 -37.55274 -34.39162 -32.25720 -31.70306 -30.89786 -29.09814 -28.58458 -26.58804 -25.37832 -24.21319 -22.68466 -22.19010 -21.87722 -19.88900 -19.31064 -19.12045 -18.74382 -18.19738 -17.81573 -17.72784 -17.22464 -16.92059 -16.77651 -16.49587 -16.25736 -15.97655 -15.58778 -15.20728 -15.04214 -14.75320 -14.44238 -14.39665 -14.18349 -13.79165 -13.53599 -13.35367 -13.13224 -13.02523 -12.94524 -12.79082 -12.61558 -12.33097 -12.06274 -11.89920 -11.87322 -11.85518 -11.51186 -11.14258 -10.82318 -10.15108 -10.06578 -9.00824 -7.85110 -5.31237 -0.89335 -0.40462 1.10235 1.39718 1.43472 1.45945 1.55191 1.98566 2.33081 2.43671 2.53278 3.00289 3.25278 3.38541 3.47564 3.54915 3.62186 3.71021 3.88332 3.93294 4.07458 4.30991 4.33758 4.44230 4.49681 4.51826 4.63244 4.71348 4.76837 4.78263 4.80112 4.88000 4.91485 5.14609 5.32070 5.37346 5.50519 5.68759 6.13372 6.22556 6.50132 7.02626 7.66269 8.29555 9.17208 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.003625 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.846155 B = 7721.306593 C = 9445.588417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.340 6.340 3 C 0.512 3.488 4 O -0.531 6.531 5 C -0.176 4.176 6 C 0.018 3.982 7 C -0.138 4.138 8 C 0.149 3.851 9 F -0.117 7.117 10 C -0.010 4.010 11 O -0.318 6.318 12 C 0.090 3.910 13 H 0.087 0.913 14 C -0.120 4.120 15 C 0.156 3.844 16 N -0.623 5.623 17 C -0.249 4.249 18 H 0.074 0.926 19 C -0.060 4.060 20 N -0.945 5.945 21 Si 0.985 3.015 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.118 3.882 26 C 0.149 3.851 27 F -0.122 7.122 28 H 0.145 0.855 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.206 0.794 32 H 0.206 0.794 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.002 0.998 37 H 0.252 0.748 38 H 0.023 0.977 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 -26.501 -8.631 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.256 6.256 3 C 0.357 3.643 4 O -0.422 6.422 5 C -0.179 4.179 6 C 0.000 4.000 7 C -0.157 4.157 8 C 0.129 3.871 9 F -0.095 7.095 10 C -0.056 4.056 11 O -0.234 6.234 12 C 0.035 3.965 13 H 0.105 0.895 14 C -0.158 4.158 15 C 0.031 3.969 16 N -0.351 5.351 17 C -0.378 4.378 18 H 0.092 0.908 19 C -0.253 4.253 20 N -0.594 5.594 21 Si 0.812 3.188 22 H -0.209 1.209 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.008 4.008 26 C 0.128 3.872 27 F -0.100 7.100 28 H 0.163 0.837 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.223 0.777 32 H 0.223 0.777 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.020 0.980 37 H 0.062 0.938 38 H 0.041 0.959 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -5.728 -25.867 -8.693 27.883 hybrid contribution -0.708 1.814 0.651 2.053 sum -6.436 -24.053 -8.042 26.165 Atomic orbital electron populations 1.23662 0.73845 1.06360 1.02528 1.86486 1.25366 1.30007 1.83776 1.20858 0.88591 0.82178 0.72664 1.90948 1.67347 1.37375 1.46505 1.19218 0.90767 0.93066 1.14807 1.21713 0.92181 0.97952 0.88151 1.21632 0.95194 0.96481 1.02356 1.18317 0.77459 0.93339 0.98029 1.91574 1.28011 1.97157 1.92763 1.18804 0.89064 0.87094 1.10685 1.86251 1.76143 1.31073 1.29936 1.23509 0.95404 0.94545 0.83080 0.89500 1.23014 0.96535 0.96206 1.00036 1.21804 0.83843 0.98566 0.92670 1.44676 1.03043 1.18704 1.68637 1.19406 0.90925 0.96438 1.31028 0.90828 1.25653 0.96788 1.01216 1.01599 1.69983 1.06068 1.32958 1.50406 0.84998 0.77467 0.78222 0.78117 1.20895 1.21201 1.19900 1.21773 0.95029 0.88805 0.95149 1.18219 0.88234 0.82285 0.98448 1.91594 1.76852 1.49026 1.92535 0.83665 0.92292 0.92025 0.77663 0.77739 0.87972 0.91209 0.89748 0.97959 0.93836 0.95906 0.96456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.53 16 2 O -0.34 -5.54 9.81 -56.50 -0.55 -6.09 16 3 C 0.51 12.47 7.89 70.25 0.55 13.02 16 4 O -0.53 -17.75 15.12 19.82 0.30 -17.45 16 5 C -0.18 -3.90 5.88 -20.07 -0.12 -4.02 16 6 C 0.02 0.20 9.61 22.54 0.22 0.42 16 7 C -0.14 -1.52 10.00 22.26 0.22 -1.29 16 8 C 0.15 3.13 7.31 22.53 0.16 3.30 16 9 F -0.12 -2.65 17.10 44.97 0.77 -1.88 16 10 C -0.01 -0.31 5.62 22.52 0.13 -0.18 16 11 O -0.32 -11.66 9.50 -93.87 -0.89 -12.55 16 12 C 0.09 3.54 3.47 31.78 0.11 3.65 16 13 H 0.09 3.07 7.97 -2.38 -0.02 3.06 16 14 C -0.12 -4.83 6.81 31.99 0.22 -4.61 16 15 C 0.16 8.01 5.89 86.86 0.51 8.52 16 16 N -0.62 -35.00 3.39 -691.98 -2.35 -37.35 16 17 C -0.25 -15.01 10.27 84.03 0.86 -14.15 16 18 H 0.07 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 20 N -0.95 -57.24 10.09 21.65 0.22 -57.02 16 21 Si 0.98 47.29 29.55 68.60 2.03 49.31 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 25 C 0.12 5.70 6.53 86.73 0.57 6.27 16 26 C 0.15 4.53 7.29 22.76 0.17 4.70 16 27 F -0.12 -4.79 14.23 44.97 0.64 -4.15 16 28 H 0.15 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.21 0.54 7.60 -2.91 -0.02 0.52 16 32 H 0.21 0.40 8.06 -2.91 -0.02 0.38 16 33 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.07 2.88 8.14 -2.38 -0.02 2.87 16 35 H 0.08 4.86 5.87 -2.38 -0.01 4.84 16 36 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.02 1.18 7.40 -2.38 -0.02 1.16 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -79.56 342.78 6.52 -73.04 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: 1.10 Total: 0.03 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 5.27 Total: 14.11 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -2.13 Total: -94.36 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.15 Total: -36.09 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 1.41 Total: -6.03 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -79.56 6.52 -73.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233910534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.541 kcal (2) G-P(sol) polarization free energy of solvation -79.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds