Wall clock time and date at job start Tue Mar 31 2020 15:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34743 * 117.00393 * 2 1 4 4 O 1.21500 * 120.00121 * 359.97438 * 3 2 1 5 5 C 1.47454 * 120.00019 * 179.97438 * 3 2 1 6 6 C 1.39815 * 120.12466 * 0.02562 * 5 3 2 7 7 C 1.37760 * 119.98788 * 179.97438 * 6 5 3 8 8 C 1.38671 * 120.24432 * 359.74414 * 7 6 5 9 9 F 1.35113 * 119.86948 * 180.27548 * 8 7 6 10 10 C 1.38888 * 120.25804 * 0.50977 * 8 7 6 11 11 O 1.36026 * 119.99586 * 179.76157 * 10 8 7 12 12 C 1.42902 * 117.00380 * 269.72392 * 11 10 8 13 13 C 1.53507 * 114.17020 * 210.00446 * 12 11 10 14 14 N 1.47489 * 87.92897 * 220.32989 * 13 12 11 15 15 C 1.46904 * 110.99948 * 138.70309 * 14 13 12 16 16 C 1.50696 * 109.46794 * 169.99650 * 15 14 13 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99717 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47481 * 87.83412 * 27.01215 * 14 13 12 25 25 C 1.38616 * 120.00685 * 359.49536 * 10 8 7 26 26 F 1.35098 * 120.12370 * 180.23168 * 25 10 8 27 27 H 1.09000 * 109.46678 * 300.00136 * 1 2 3 28 28 H 1.09001 * 109.46736 * 59.99385 * 1 2 3 29 29 H 1.08993 * 109.47734 * 179.97438 * 1 2 3 30 30 H 1.07991 * 120.00725 * 359.97438 * 6 5 3 31 31 H 1.07992 * 119.87771 * 180.02562 * 7 6 5 32 32 H 1.09001 * 113.25573 * 342.95493 * 12 11 10 33 33 H 1.08997 * 113.47543 * 105.56799 * 13 12 11 34 34 H 1.08999 * 113.53382 * 335.09910 * 13 12 11 35 35 H 1.09005 * 109.47078 * 49.99935 * 15 14 13 36 36 H 1.09002 * 109.47005 * 290.00151 * 15 14 13 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.08990 * 113.47671 * 87.75950 * 24 14 13 39 39 H 1.09001 * 113.47203 * 218.22506 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5363 1.2776 0.0006 6 6 4.3003 0.1066 0.0006 7 6 5.6758 0.1819 0.0006 8 6 6.3077 1.4163 -0.0048 9 9 7.6573 1.4812 -0.0104 10 6 5.5589 2.5859 0.0005 11 8 6.1843 3.7939 0.0001 12 6 6.4825 4.3705 1.2731 13 6 6.4887 5.9056 1.2819 14 7 7.6725 5.8425 2.1594 15 6 8.6681 6.8514 1.7736 16 6 9.7424 6.9257 2.8278 17 1 9.6909 6.2871 3.6972 18 6 10.7916 7.8084 2.6818 19 7 11.7294 7.8729 3.6016 20 14 10.8809 8.9124 1.1777 21 1 11.6368 8.2228 0.1015 22 1 9.5066 9.2137 0.7025 23 1 11.5704 10.1787 1.5335 24 6 7.9830 4.5346 1.5528 25 6 4.1742 2.5225 0.0006 26 9 3.4434 3.6588 0.0010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.8121 -0.8567 0.0006 31 1 6.2641 -0.7237 0.0002 32 1 5.9194 3.9218 2.0914 33 1 5.6134 6.3405 1.7643 34 1 6.6945 6.3455 0.3061 35 1 8.1832 7.8231 1.6798 36 1 9.1147 6.5745 0.8185 37 1 12.4677 8.4936 3.4987 38 1 8.5877 4.6077 0.6490 39 1 8.3740 3.8077 2.2647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233910744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:13 Heat of formation + Delta-G solvation = -128.061227 kcal Electronic energy + Delta-G solvation = -27385.927846 eV Core-core repulsion = 22932.477688 eV Total energy + Delta-G solvation = -4453.450158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.37046 -49.30455 -40.91223 -40.20966 -39.00547 -37.11252 -36.76865 -32.82957 -31.50619 -30.80093 -29.59204 -28.10130 -25.72169 -25.46629 -24.62801 -23.40307 -21.82015 -21.30948 -19.75605 -19.01548 -18.48327 -18.07267 -17.21369 -17.11723 -16.96159 -16.78817 -16.42667 -16.01620 -15.59589 -15.44088 -14.87594 -14.77904 -14.52694 -14.45245 -14.04868 -13.75749 -13.54454 -13.34176 -13.04194 -12.63962 -12.44715 -12.36137 -12.29174 -12.12190 -11.93830 -11.66888 -11.25302 -11.09199 -10.93351 -10.67512 -10.08221 -9.82985 -9.69505 -9.40529 -9.38421 -9.25558 -8.60293 -8.15936 -6.07236 -4.05137 -0.13657 0.35801 1.86366 2.07827 2.77355 3.11181 3.26833 3.34543 3.36215 3.43929 3.75699 4.03200 4.18749 4.30195 4.39769 4.59089 4.67458 4.67941 4.76653 4.79863 5.00948 5.08062 5.18833 5.23087 5.25893 5.31589 5.41541 5.55765 5.80440 5.82489 5.89935 6.00677 6.12547 6.15351 6.33558 6.66806 7.17124 7.23600 7.24436 7.61427 7.74278 8.58760 9.02449 9.53412 11.05939 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.002640 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.908048 B =10603.519486 C =11249.206585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.511 3.489 4 O -0.488 6.488 5 C -0.171 4.171 6 C -0.011 4.011 7 C -0.168 4.168 8 C 0.155 3.845 9 F -0.108 7.108 10 C 0.021 3.979 11 O -0.302 6.302 12 C 0.048 3.952 13 C -0.002 4.002 14 N -0.449 5.449 15 C 0.130 3.870 16 C -0.508 4.508 17 H 0.081 0.919 18 C 0.068 3.932 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.267 1.267 23 H -0.284 1.284 24 C 0.000 4.000 25 C 0.178 3.822 26 F -0.095 7.095 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.031 0.969 36 H -0.001 1.001 37 H 0.264 0.736 38 H 0.077 0.923 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.161 -21.140 -9.870 30.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.355 3.645 4 O -0.375 6.375 5 C -0.174 4.174 6 C -0.029 4.029 7 C -0.186 4.186 8 C 0.134 3.866 9 F -0.086 7.086 10 C -0.026 4.026 11 O -0.218 6.218 12 C -0.007 4.007 13 C -0.132 4.132 14 N -0.173 5.173 15 C 0.003 3.997 16 C -0.546 4.546 17 H 0.099 0.901 18 C -0.134 4.134 19 N -0.537 5.537 20 Si 0.702 3.298 21 H -0.202 1.202 22 H -0.192 1.192 23 H -0.210 1.210 24 C -0.129 4.129 25 C 0.157 3.843 26 F -0.073 7.073 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.179 0.821 31 H 0.176 0.824 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.017 0.983 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.181 -20.453 -9.240 30.182 hybrid contribution 0.307 0.940 -1.499 1.796 sum -19.874 -19.513 -10.739 29.851 Atomic orbital electron populations 1.23334 0.75328 1.03995 1.02966 1.86503 1.24001 1.32032 1.84509 1.20628 0.88231 0.81969 0.73671 1.90944 1.66396 1.35697 1.44507 1.19043 0.90732 0.92953 1.14663 1.21197 0.92389 0.97911 0.91451 1.21171 0.95134 0.96807 1.05527 1.18149 0.77997 0.93081 0.97329 1.91625 1.27399 1.97066 1.92475 1.18457 0.88670 0.87180 1.08292 1.86317 1.75713 1.29105 1.30636 1.24644 0.97986 0.94881 0.83221 1.24157 0.98110 0.92786 0.98099 1.68998 1.04726 1.02748 1.40786 1.20754 0.91625 0.91339 0.95941 1.20928 1.04665 1.22243 1.06791 0.90103 1.24916 0.95411 0.96812 0.96228 1.69892 1.12113 1.37554 1.34174 0.86867 0.78627 0.80715 0.83611 1.20203 1.19199 1.20991 1.24294 0.94038 0.95285 0.99309 1.17748 0.87782 0.81922 0.96839 1.91652 1.76216 1.47314 1.92071 0.91558 0.91614 0.87669 0.82094 0.82395 0.87981 0.89338 0.90797 0.95150 0.98279 0.92594 0.90472 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.57 101.05 1.07 1.26 16 2 O -0.35 -2.77 9.81 -40.61 -0.40 -3.16 16 3 C 0.51 5.39 7.89 34.48 0.27 5.66 16 4 O -0.49 -6.70 15.12 -19.27 -0.29 -6.99 16 5 C -0.17 -1.68 5.88 -104.94 -0.62 -2.29 16 6 C -0.01 -0.07 9.61 -39.17 -0.38 -0.45 16 7 C -0.17 -1.15 10.00 -39.60 -0.40 -1.55 16 8 C 0.15 1.64 7.31 -39.18 -0.29 1.35 16 9 F -0.11 -1.32 17.10 2.25 0.04 -1.28 16 10 C 0.02 0.26 5.62 -39.20 -0.22 0.04 16 11 O -0.30 -4.63 9.82 -19.82 -0.19 -4.83 16 12 C 0.05 0.76 4.72 -26.20 -0.12 0.64 16 13 C 0.00 -0.04 7.52 -7.54 -0.06 -0.10 16 14 N -0.45 -9.62 6.32 -246.10 -1.55 -11.17 16 15 C 0.13 3.22 3.64 -4.98 -0.02 3.20 16 16 C -0.51 -14.78 9.94 -34.44 -0.34 -15.12 16 17 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 20 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.00 0.00 7.55 -7.54 -0.06 -0.06 16 25 C 0.18 2.18 7.29 -38.83 -0.28 1.90 16 26 F -0.09 -1.39 15.39 2.25 0.03 -1.35 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.16 0.57 7.60 -52.49 -0.40 0.17 16 31 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.10 1.48 7.96 -51.93 -0.41 1.07 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 35 H 0.03 0.76 7.14 -51.93 -0.37 0.39 16 36 H 0.00 -0.01 6.73 -51.93 -0.35 -0.36 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 39 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -34.36 348.63 -7.00 -41.35 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -4.45 Total: -4.21 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.53 Total: -3.61 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.78 Total: -38.22 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.88 Total: -14.98 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.07 Total: -2.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.36 -7.00 -41.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233910744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.710 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds