Wall clock time and date at job start Tue Mar 31 2020 15:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34743 * 117.00393 * 2 1 4 4 O 1.21500 * 120.00121 * 359.97438 * 3 2 1 5 5 C 1.47454 * 120.00019 * 179.97438 * 3 2 1 6 6 C 1.39815 * 120.12466 * 0.02562 * 5 3 2 7 7 C 1.37760 * 119.98788 * 179.97438 * 6 5 3 8 8 C 1.38671 * 120.24432 * 359.74414 * 7 6 5 9 9 F 1.35113 * 119.86948 * 180.27548 * 8 7 6 10 10 C 1.38888 * 120.25804 * 0.50977 * 8 7 6 11 11 O 1.36026 * 119.99586 * 179.76157 * 10 8 7 12 12 C 1.42902 * 117.00380 * 269.72392 * 11 10 8 13 13 C 1.53507 * 114.17020 * 210.00446 * 12 11 10 14 14 N 1.47489 * 87.92897 * 220.32989 * 13 12 11 15 15 C 1.46904 * 110.99948 * 138.70309 * 14 13 12 16 16 C 1.50696 * 109.46794 * 169.99650 * 15 14 13 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99717 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47481 * 87.83412 * 27.01215 * 14 13 12 25 25 C 1.38616 * 120.00685 * 359.49536 * 10 8 7 26 26 F 1.35098 * 120.12370 * 180.23168 * 25 10 8 27 27 H 1.09000 * 109.46678 * 300.00136 * 1 2 3 28 28 H 1.09001 * 109.46736 * 59.99385 * 1 2 3 29 29 H 1.08993 * 109.47734 * 179.97438 * 1 2 3 30 30 H 1.07991 * 120.00725 * 359.97438 * 6 5 3 31 31 H 1.07992 * 119.87771 * 180.02562 * 7 6 5 32 32 H 1.09001 * 113.25573 * 342.95493 * 12 11 10 33 33 H 1.08997 * 113.47543 * 105.56799 * 13 12 11 34 34 H 1.08999 * 113.53382 * 335.09910 * 13 12 11 35 35 H 1.09005 * 109.47078 * 49.99935 * 15 14 13 36 36 H 1.09002 * 109.47005 * 290.00151 * 15 14 13 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.08990 * 113.47671 * 87.75950 * 24 14 13 39 39 H 1.09001 * 113.47203 * 218.22506 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5363 1.2776 0.0006 6 6 4.3003 0.1066 0.0006 7 6 5.6758 0.1819 0.0006 8 6 6.3077 1.4163 -0.0048 9 9 7.6573 1.4812 -0.0104 10 6 5.5589 2.5859 0.0005 11 8 6.1843 3.7939 0.0001 12 6 6.4825 4.3705 1.2731 13 6 6.4887 5.9056 1.2819 14 7 7.6725 5.8425 2.1594 15 6 8.6681 6.8514 1.7736 16 6 9.7424 6.9257 2.8278 17 1 9.6909 6.2871 3.6972 18 6 10.7916 7.8084 2.6818 19 7 11.7294 7.8729 3.6016 20 14 10.8809 8.9124 1.1777 21 1 11.6368 8.2228 0.1015 22 1 9.5066 9.2137 0.7025 23 1 11.5704 10.1787 1.5335 24 6 7.9830 4.5346 1.5528 25 6 4.1742 2.5225 0.0006 26 9 3.4434 3.6588 0.0010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.8121 -0.8567 0.0006 31 1 6.2641 -0.7237 0.0002 32 1 5.9194 3.9218 2.0914 33 1 5.6134 6.3405 1.7643 34 1 6.6945 6.3455 0.3061 35 1 8.1832 7.8231 1.6798 36 1 9.1147 6.5745 0.8185 37 1 12.4677 8.4936 3.4987 38 1 8.5877 4.6077 0.6490 39 1 8.3740 3.8077 2.2647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233910744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:12 Heat of formation + Delta-G solvation = -152.801424 kcal Electronic energy + Delta-G solvation = -27387.000661 eV Core-core repulsion = 22932.477688 eV Total energy + Delta-G solvation = -4454.522973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.28147 -50.22279 -41.71535 -41.45065 -40.01469 -38.15639 -37.55417 -35.00147 -32.34527 -31.99405 -31.05553 -28.62364 -27.42930 -26.98125 -25.38082 -24.34123 -23.22707 -22.39103 -21.24328 -19.94961 -19.30324 -19.05013 -18.88916 -18.16867 -17.87827 -17.76668 -17.35856 -16.85541 -16.78637 -16.51511 -16.40432 -15.98995 -15.78013 -15.58085 -15.05984 -14.87069 -14.55580 -14.42603 -14.18317 -14.17325 -13.89631 -13.50783 -13.35024 -13.15101 -12.98930 -12.82915 -12.73009 -12.49744 -11.85752 -11.85626 -11.81639 -11.73294 -11.52681 -10.97678 -10.83722 -10.18546 -10.12538 -9.81864 -8.33526 -6.38170 -0.89991 -0.42125 1.09999 1.31368 1.33201 1.40204 1.43991 1.95897 2.29159 2.29971 2.48901 2.97639 2.99052 3.14870 3.19940 3.38388 3.54763 3.66143 3.76507 3.86684 4.25492 4.30933 4.32901 4.35657 4.42352 4.47482 4.50722 4.57615 4.65491 4.72517 4.73323 4.77066 4.79882 4.80361 5.16133 5.28225 5.36356 5.58694 5.85287 6.08616 6.44149 6.50455 6.67194 7.24841 8.83286 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.002640 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.908048 B =10603.519486 C =11249.206585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.343 6.343 3 C 0.513 3.487 4 O -0.528 6.528 5 C -0.175 4.175 6 C 0.018 3.982 7 C -0.142 4.142 8 C 0.145 3.855 9 F -0.121 7.121 10 C -0.007 4.007 11 O -0.315 6.315 12 C 0.072 3.928 13 C -0.003 4.003 14 N -0.475 5.475 15 C 0.141 3.859 16 C -0.521 4.521 17 H 0.035 0.965 18 C 0.008 3.992 19 N -0.945 5.945 20 Si 0.948 3.052 21 H -0.265 1.265 22 H -0.250 1.250 23 H -0.277 1.277 24 C -0.004 4.004 25 C 0.157 3.843 26 F -0.118 7.118 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.142 0.858 30 H 0.204 0.796 31 H 0.199 0.801 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.004 0.996 37 H 0.269 0.731 38 H 0.070 0.930 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.607 -23.620 -11.653 34.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.259 6.259 3 C 0.359 3.641 4 O -0.419 6.419 5 C -0.177 4.177 6 C 0.000 4.000 7 C -0.160 4.160 8 C 0.125 3.875 9 F -0.099 7.099 10 C -0.053 4.053 11 O -0.231 6.231 12 C 0.016 3.984 13 C -0.131 4.131 14 N -0.199 5.199 15 C 0.013 3.987 16 C -0.559 4.559 17 H 0.053 0.947 18 C -0.189 4.189 19 N -0.585 5.585 20 Si 0.771 3.229 21 H -0.190 1.190 22 H -0.174 1.174 23 H -0.202 1.202 24 C -0.133 4.133 25 C 0.137 3.863 26 F -0.096 7.096 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.160 0.840 30 H 0.221 0.779 31 H 0.216 0.784 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.022 0.978 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.650 -22.977 -11.028 33.441 hybrid contribution 0.660 1.473 -0.889 1.843 sum -20.991 -21.504 -11.917 32.327 Atomic orbital electron populations 1.23657 0.73774 1.06307 1.02634 1.86494 1.25429 1.30227 1.83725 1.20795 0.88478 0.82165 0.72671 1.90931 1.67269 1.37189 1.46523 1.19189 0.90777 0.93059 1.14668 1.21687 0.91980 0.98230 0.88061 1.21606 0.95383 0.96498 1.02508 1.18436 0.77422 0.93768 0.97922 1.91596 1.28425 1.97175 1.92718 1.18664 0.88985 0.86782 1.10900 1.86270 1.76127 1.30811 1.29875 1.24266 0.95789 0.94010 0.84334 1.24189 0.96843 0.94520 0.97584 1.68863 1.05392 1.03158 1.42497 1.20511 0.91210 0.92528 0.94425 1.21150 1.06501 1.21634 1.06604 0.94681 1.25887 0.94741 0.98484 0.99827 1.70045 1.13043 1.38791 1.36634 0.85697 0.79581 0.78419 0.79178 1.18990 1.17422 1.20246 1.24299 0.96249 0.93978 0.98747 1.17978 0.87664 0.82237 0.98451 1.91587 1.76697 1.48691 1.92579 0.92030 0.91954 0.83968 0.77901 0.78393 0.86659 0.87892 0.90595 0.95038 0.97786 0.92224 0.91184 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.57 113.37 1.20 1.43 16 2 O -0.34 -4.35 9.81 -56.53 -0.55 -4.90 16 3 C 0.51 10.01 7.89 70.25 0.55 10.57 16 4 O -0.53 -14.47 15.12 19.84 0.30 -14.17 16 5 C -0.17 -3.05 5.88 -20.07 -0.12 -3.17 16 6 C 0.02 0.15 9.61 22.54 0.22 0.37 16 7 C -0.14 -1.34 10.00 22.26 0.22 -1.12 16 8 C 0.14 2.78 7.31 22.53 0.16 2.95 16 9 F -0.12 -2.81 17.10 44.97 0.77 -2.05 16 10 C -0.01 -0.18 5.62 22.52 0.13 -0.05 16 11 O -0.32 -9.67 9.82 -93.84 -0.92 -10.59 16 12 C 0.07 2.28 4.72 30.94 0.15 2.43 16 13 C 0.00 -0.09 7.52 83.57 0.63 0.54 16 14 N -0.48 -20.72 6.32 -932.92 -5.89 -26.61 16 15 C 0.14 7.03 3.64 85.55 0.31 7.34 16 16 C -0.52 -31.32 9.94 25.60 0.25 -31.06 16 17 H 0.03 2.36 8.06 -2.91 -0.02 2.33 16 18 C 0.01 0.50 5.47 84.66 0.46 0.96 16 19 N -0.94 -60.12 13.96 21.45 0.30 -59.82 16 20 Si 0.95 44.87 27.47 68.60 1.88 46.76 16 21 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.25 -11.10 6.54 99.48 0.65 -10.44 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 24 C 0.00 -0.14 7.55 83.58 0.63 0.50 16 25 C 0.16 3.79 7.29 22.76 0.17 3.95 16 26 F -0.12 -3.53 15.39 44.97 0.69 -2.84 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.20 0.11 7.60 -2.92 -0.02 0.09 16 31 H 0.20 0.38 8.06 -2.91 -0.02 0.36 16 32 H 0.12 3.32 7.96 -2.39 -0.02 3.30 16 33 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.08 2.63 7.91 -2.39 -0.02 2.61 16 35 H 0.03 1.55 7.14 -2.38 -0.02 1.54 16 36 H 0.00 0.21 6.73 -2.39 -0.02 0.20 16 37 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 38 H 0.07 2.73 7.42 -2.39 -0.02 2.71 16 39 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -79.17 348.63 2.58 -76.59 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.04 Total: 2.01 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 4.97 Total: -4.37 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -5.59 Total: -86.44 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.18 Total: -29.67 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 1.46 Total: -4.89 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.76 kcal Total: -79.17 2.58 -76.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233910744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.210 kcal (2) G-P(sol) polarization free energy of solvation -79.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds