Wall clock time and date at job start Tue Mar 31 2020 15:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34784 * 116.99771 * 2 1 4 4 O 1.21541 * 119.99880 * 0.02562 * 3 2 1 5 5 C 1.47157 * 119.99701 * 179.97438 * 3 2 1 6 6 C 1.40124 * 120.13823 * 269.99799 * 5 3 2 7 7 F 1.35100 * 120.07154 * 0.02562 * 6 5 3 8 8 C 1.37943 * 119.85681 * 180.02562 * 6 5 3 9 9 C 1.38954 * 120.13875 * 359.97438 * 8 6 5 10 10 O 1.35710 * 119.85757 * 180.02562 * 9 8 6 11 11 C 1.42901 * 116.99810 * 5.75175 * 10 9 8 12 12 C 1.53512 * 114.16527 * 156.81516 * 11 10 9 13 13 N 1.47484 * 87.93058 * 87.81565 * 12 11 10 14 14 C 1.46901 * 111.00167 * 138.70453 * 13 12 11 15 15 C 1.50693 * 109.47205 * 169.99786 * 14 13 12 16 16 H 1.08003 * 120.00469 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00189 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99729 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00107 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46796 * 180.02562 * 19 17 15 21 21 H 1.48492 * 109.47469 * 300.00062 * 19 17 15 22 22 H 1.48502 * 109.47044 * 60.00684 * 19 17 15 23 23 C 1.47478 * 87.83897 * 27.00879 * 13 12 11 24 24 C 1.38950 * 120.28147 * 0.28065 * 9 8 6 25 25 C 1.37942 * 120.13728 * 359.48566 * 24 9 8 26 26 F 1.35107 * 120.06916 * 180.27531 * 25 24 9 27 27 H 1.09002 * 109.47408 * 299.99479 * 1 2 3 28 28 H 1.08998 * 109.47134 * 59.99956 * 1 2 3 29 29 H 1.09000 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.92928 * 180.02562 * 8 6 5 31 31 H 1.08996 * 113.25674 * 23.86697 * 11 10 9 32 32 H 1.09000 * 113.48204 * 333.04801 * 12 11 10 33 33 H 1.09000 * 113.52820 * 202.58214 * 12 11 10 34 34 H 1.09003 * 109.47095 * 49.99252 * 14 13 12 35 35 H 1.09006 * 109.46531 * 289.99738 * 14 13 12 36 36 H 0.97002 * 120.00185 * 180.02562 * 18 17 15 37 37 H 1.08998 * 113.47459 * 87.75636 * 23 13 12 38 38 H 1.08997 * 113.47680 * 218.22628 * 23 13 12 39 39 H 1.08006 * 119.92905 * 179.72323 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4018 2.2202 0.0005 5 6 3.5334 1.2780 0.0006 6 6 4.2355 1.3151 1.2127 7 9 3.5648 1.2797 2.3849 8 6 5.6130 1.3878 1.2064 9 6 6.3043 1.4237 0.0016 10 8 7.6595 1.4947 0.0021 11 6 8.3135 1.4015 1.2692 12 6 9.7726 0.9310 1.1903 13 7 10.1619 2.3422 1.0107 14 6 11.3691 2.6580 1.7860 15 6 11.8765 4.0213 1.3924 16 1 11.3547 4.5956 0.6411 17 6 13.0069 4.5356 1.9913 18 7 13.6425 3.8362 2.9058 19 14 13.6362 6.2252 1.5028 20 1 14.8565 6.5445 2.2867 21 1 13.9631 6.2320 0.0543 22 1 12.5898 7.2421 1.7790 23 6 8.9439 2.7146 1.7541 24 6 5.6136 1.3925 -1.2037 25 6 4.2364 1.3150 -1.2109 26 9 3.5665 1.2792 -2.3837 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 6.1553 1.4160 2.1399 31 1 7.7188 0.8866 2.0237 32 1 9.9819 0.3088 0.3201 33 1 10.1398 0.4942 2.1190 34 1 12.1371 1.9117 1.5826 35 1 11.1296 2.6525 2.8494 36 1 14.4376 4.1981 3.3274 37 1 9.0890 2.7539 2.8337 38 1 8.4506 3.6039 1.3618 39 1 6.1565 1.4252 -2.1369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233912960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:15 Heat of formation + Delta-G solvation = -129.415382 kcal Electronic energy + Delta-G solvation = -26911.472028 eV Core-core repulsion = 22457.963150 eV Total energy + Delta-G solvation = -4453.508878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.55512 -49.53052 -40.97578 -40.58976 -38.94979 -37.01040 -36.55600 -32.96333 -31.31888 -31.01420 -29.40400 -28.00129 -25.83233 -25.53892 -24.34068 -23.62817 -21.95526 -21.53850 -20.14272 -19.03139 -18.40168 -17.87325 -17.48166 -17.02330 -16.50493 -16.44527 -16.34941 -16.12723 -15.80013 -15.57379 -15.45085 -15.05137 -14.74091 -14.36601 -13.95619 -13.93050 -13.58768 -13.52458 -13.04356 -12.68303 -12.55324 -12.34625 -12.29558 -12.02789 -11.74066 -11.23356 -11.20097 -11.06865 -10.99302 -10.63818 -10.47682 -10.29905 -9.80600 -9.37364 -9.35112 -8.81380 -8.50284 -8.01677 -6.10494 -4.12001 0.34656 0.48047 1.59334 2.21156 2.57209 2.82108 3.29687 3.30561 3.34279 3.37958 3.83485 4.21874 4.26080 4.33335 4.35698 4.43415 4.54889 4.66718 4.72258 4.81038 4.91783 5.10440 5.20933 5.24842 5.25936 5.38526 5.50534 5.67968 5.72187 5.83780 5.86079 5.95747 6.03950 6.16963 6.44173 6.98566 7.06057 7.21461 7.52965 7.74208 7.99124 8.34635 8.95266 9.52676 11.00439 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.002274 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.493544 B =12311.902653 C =12452.734174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.347 6.347 3 C 0.526 3.474 4 O -0.483 6.483 5 C -0.233 4.233 6 C 0.215 3.785 7 F -0.118 7.118 8 C -0.259 4.259 9 C 0.226 3.774 10 O -0.255 6.255 11 C 0.034 3.966 12 C 0.003 3.997 13 N -0.457 5.457 14 C 0.156 3.844 15 C -0.507 4.507 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.275 1.275 22 H -0.277 1.277 23 C -0.005 4.005 24 C -0.200 4.200 25 C 0.212 3.788 26 F -0.116 7.116 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.163 0.837 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.032 0.968 35 H 0.005 0.995 36 H 0.263 0.737 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.666 -10.809 -3.921 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.264 6.264 3 C 0.367 3.633 4 O -0.369 6.369 5 C -0.237 4.237 6 C 0.195 3.805 7 F -0.096 7.096 8 C -0.279 4.279 9 C 0.177 3.823 10 O -0.165 6.165 11 C -0.022 4.022 12 C -0.126 4.126 13 N -0.180 5.180 14 C 0.031 3.969 15 C -0.545 4.545 16 H 0.082 0.918 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.728 3.272 20 H -0.213 1.213 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.134 4.134 24 C -0.219 4.219 25 C 0.192 3.808 26 F -0.094 7.094 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.180 0.820 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.023 0.977 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.461 -10.191 -4.617 25.093 hybrid contribution -0.043 0.690 0.941 1.167 sum -22.504 -9.501 -3.676 24.703 Atomic orbital electron populations 1.23375 0.75620 1.04141 1.02896 1.86675 1.23863 1.32157 1.83671 1.20526 0.88089 0.82027 0.72619 1.90900 1.66330 1.36026 1.43636 1.18691 0.90822 1.21054 0.93104 1.16702 0.88919 0.95526 0.79331 1.91583 1.80369 1.92857 1.44770 1.21233 0.92453 1.13842 1.00352 1.18552 0.84085 0.87767 0.91875 1.86237 1.13815 1.84181 1.32315 1.24003 0.94178 1.00620 0.83421 1.24019 0.90039 0.96154 1.02426 1.69138 1.02736 1.03181 1.42916 1.20310 0.87413 0.97980 0.91246 1.21034 1.10298 1.01145 1.22065 0.91830 1.25005 0.96586 0.98037 0.95051 1.69934 1.19391 1.37876 1.26752 0.86515 0.78091 0.83899 0.78667 1.21322 1.20084 1.20210 1.24280 0.93792 0.96803 0.98574 1.20211 0.91097 1.11432 0.99195 1.16586 0.88770 0.96123 0.79322 1.91589 1.80235 1.92932 1.44635 0.91540 0.91537 0.87607 0.82004 0.88851 0.89337 0.89942 0.95041 0.97719 0.92782 0.90046 0.89594 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.57 101.05 1.07 1.30 16 2 O -0.35 -3.73 10.58 -40.72 -0.43 -4.16 16 3 C 0.53 6.65 6.66 34.35 0.23 6.88 16 4 O -0.48 -7.15 16.90 -19.30 -0.33 -7.48 16 5 C -0.23 -2.76 5.76 -104.86 -0.60 -3.37 16 6 C 0.22 2.40 7.28 -38.98 -0.28 2.12 16 7 F -0.12 -1.35 16.83 2.25 0.04 -1.31 16 8 C -0.26 -2.68 8.98 -39.42 -0.35 -3.03 16 9 C 0.23 2.54 6.68 -39.05 -0.26 2.28 16 10 O -0.26 -3.40 10.18 -18.83 -0.19 -3.59 16 11 C 0.03 0.44 4.05 -26.20 -0.11 0.34 16 12 C 0.00 0.04 7.52 -7.53 -0.06 -0.01 16 13 N -0.46 -9.25 6.32 -246.08 -1.55 -10.80 16 14 C 0.16 3.86 4.57 -4.98 -0.02 3.84 16 15 C -0.51 -14.05 9.39 -34.44 -0.32 -14.38 16 16 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 17 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 19 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.01 -0.08 7.56 -7.53 -0.06 -0.14 16 24 C -0.20 -2.08 9.94 -39.43 -0.39 -2.47 16 25 C 0.21 2.34 7.28 -38.98 -0.28 2.05 16 26 F -0.12 -1.30 16.83 2.25 0.04 -1.26 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.16 1.42 5.86 -52.49 -0.31 1.11 16 31 H 0.09 0.91 5.89 -51.93 -0.31 0.60 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.18 7.91 -51.93 -0.41 0.77 16 34 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.01 0.13 7.30 -51.93 -0.38 -0.25 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -31.90 350.82 -7.26 -39.16 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -4.29 Total: -3.75 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.55 Total: -3.15 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.82 Total: -36.16 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.95 Total: -15.23 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.57 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.90 -7.26 -39.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233912960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.260 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds