Wall clock time and date at job start Tue Mar 31 2020 15:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34784 * 116.99771 * 2 1 4 4 O 1.21541 * 119.99880 * 0.02562 * 3 2 1 5 5 C 1.47157 * 119.99701 * 179.97438 * 3 2 1 6 6 C 1.40124 * 120.13823 * 269.99799 * 5 3 2 7 7 F 1.35100 * 120.07154 * 0.02562 * 6 5 3 8 8 C 1.37943 * 119.85681 * 180.02562 * 6 5 3 9 9 C 1.38954 * 120.13875 * 359.97438 * 8 6 5 10 10 O 1.35710 * 119.85757 * 180.02562 * 9 8 6 11 11 C 1.42901 * 116.99810 * 5.75175 * 10 9 8 12 12 C 1.53512 * 114.16527 * 156.81516 * 11 10 9 13 13 N 1.47484 * 87.93058 * 87.81565 * 12 11 10 14 14 C 1.46901 * 111.00167 * 138.70453 * 13 12 11 15 15 C 1.50693 * 109.47205 * 169.99786 * 14 13 12 16 16 H 1.08003 * 120.00469 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00189 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99729 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00107 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46796 * 180.02562 * 19 17 15 21 21 H 1.48492 * 109.47469 * 300.00062 * 19 17 15 22 22 H 1.48502 * 109.47044 * 60.00684 * 19 17 15 23 23 C 1.47478 * 87.83897 * 27.00879 * 13 12 11 24 24 C 1.38950 * 120.28147 * 0.28065 * 9 8 6 25 25 C 1.37942 * 120.13728 * 359.48566 * 24 9 8 26 26 F 1.35107 * 120.06916 * 180.27531 * 25 24 9 27 27 H 1.09002 * 109.47408 * 299.99479 * 1 2 3 28 28 H 1.08998 * 109.47134 * 59.99956 * 1 2 3 29 29 H 1.09000 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.92928 * 180.02562 * 8 6 5 31 31 H 1.08996 * 113.25674 * 23.86697 * 11 10 9 32 32 H 1.09000 * 113.48204 * 333.04801 * 12 11 10 33 33 H 1.09000 * 113.52820 * 202.58214 * 12 11 10 34 34 H 1.09003 * 109.47095 * 49.99252 * 14 13 12 35 35 H 1.09006 * 109.46531 * 289.99738 * 14 13 12 36 36 H 0.97002 * 120.00185 * 180.02562 * 18 17 15 37 37 H 1.08998 * 113.47459 * 87.75636 * 23 13 12 38 38 H 1.08997 * 113.47680 * 218.22628 * 23 13 12 39 39 H 1.08006 * 119.92905 * 179.72323 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4018 2.2202 0.0005 5 6 3.5334 1.2780 0.0006 6 6 4.2355 1.3151 1.2127 7 9 3.5648 1.2797 2.3849 8 6 5.6130 1.3878 1.2064 9 6 6.3043 1.4237 0.0016 10 8 7.6595 1.4947 0.0021 11 6 8.3135 1.4015 1.2692 12 6 9.7726 0.9310 1.1903 13 7 10.1619 2.3422 1.0107 14 6 11.3691 2.6580 1.7860 15 6 11.8765 4.0213 1.3924 16 1 11.3547 4.5956 0.6411 17 6 13.0069 4.5356 1.9913 18 7 13.6425 3.8362 2.9058 19 14 13.6362 6.2252 1.5028 20 1 14.8565 6.5445 2.2867 21 1 13.9631 6.2320 0.0543 22 1 12.5898 7.2421 1.7790 23 6 8.9439 2.7146 1.7541 24 6 5.6136 1.3925 -1.2037 25 6 4.2364 1.3150 -1.2109 26 9 3.5665 1.2792 -2.3837 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 6.1553 1.4160 2.1399 31 1 7.7188 0.8866 2.0237 32 1 9.9819 0.3088 0.3201 33 1 10.1398 0.4942 2.1190 34 1 12.1371 1.9117 1.5826 35 1 11.1296 2.6525 2.8494 36 1 14.4376 4.1981 3.3274 37 1 9.0890 2.7539 2.8337 38 1 8.4506 3.6039 1.3618 39 1 6.1565 1.4252 -2.1369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233912960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:15 Heat of formation + Delta-G solvation = -150.504889 kcal Electronic energy + Delta-G solvation = -26912.386538 eV Core-core repulsion = 22457.963150 eV Total energy + Delta-G solvation = -4454.423388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.42256 -50.39719 -41.98524 -41.57431 -40.08007 -37.98268 -37.54135 -35.00852 -32.29610 -31.87081 -31.03034 -28.67593 -27.43974 -26.86724 -25.31239 -24.67576 -23.45144 -22.57042 -21.25564 -19.98875 -19.30234 -18.81458 -18.55126 -18.36845 -17.90224 -17.37645 -17.34275 -17.02668 -16.85038 -16.66942 -16.46081 -16.34931 -16.01757 -15.49224 -15.19113 -15.05354 -14.99990 -14.40428 -14.08761 -13.84616 -13.65031 -13.55807 -13.37275 -13.20410 -13.00059 -12.79653 -12.58719 -12.33033 -12.19960 -11.99581 -11.96977 -11.55905 -11.50724 -11.26544 -10.60691 -10.18392 -9.74366 -9.57644 -8.22689 -6.31892 -0.53570 -0.35253 0.64224 1.40212 1.40594 1.42847 1.51004 1.61841 1.96483 2.39474 2.42436 2.96530 3.09801 3.23148 3.30488 3.41218 3.44703 3.47921 3.80482 3.86648 4.19356 4.23940 4.26303 4.36578 4.42193 4.48235 4.55755 4.64358 4.64623 4.65248 4.80242 4.86346 4.96355 5.01258 5.05542 5.21021 5.58819 5.79809 6.04531 6.12062 6.31156 6.45435 6.82052 7.37520 8.87631 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.002274 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.493544 B =12311.902653 C =12452.734174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.351 6.351 3 C 0.526 3.474 4 O -0.513 6.513 5 C -0.242 4.242 6 C 0.210 3.790 7 F -0.120 7.120 8 C -0.245 4.245 9 C 0.219 3.781 10 O -0.270 6.270 11 C 0.062 3.938 12 C 0.001 3.999 13 N -0.489 5.489 14 C 0.172 3.828 15 C -0.527 4.527 16 H 0.054 0.946 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.965 3.035 20 H -0.281 1.281 21 H -0.271 1.271 22 H -0.269 1.269 23 C -0.012 4.012 24 C -0.189 4.189 25 C 0.209 3.791 26 F -0.118 7.118 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.140 0.860 30 H 0.182 0.818 31 H 0.138 0.862 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.004 0.996 35 H -0.010 1.010 36 H 0.265 0.735 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.703 -11.240 -4.047 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.267 6.267 3 C 0.368 3.632 4 O -0.402 6.402 5 C -0.246 4.246 6 C 0.190 3.810 7 F -0.099 7.099 8 C -0.264 4.264 9 C 0.170 3.830 10 O -0.181 6.181 11 C 0.006 3.994 12 C -0.128 4.128 13 N -0.211 5.211 14 C 0.045 3.955 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.790 3.210 20 H -0.206 1.206 21 H -0.196 1.196 22 H -0.194 1.194 23 C -0.141 4.141 24 C -0.208 4.208 25 C 0.189 3.811 26 F -0.097 7.097 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.158 0.842 30 H 0.199 0.801 31 H 0.155 0.845 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.023 0.977 35 H 0.008 0.992 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -23.525 -10.648 -4.755 26.257 hybrid contribution 0.161 0.750 0.938 1.212 sum -23.365 -9.897 -3.816 25.660 Atomic orbital electron populations 1.23738 0.73617 1.06478 1.03066 1.86669 1.25886 1.31114 1.83014 1.20724 0.88465 0.82143 0.71821 1.90880 1.67014 1.36985 1.45287 1.18856 0.90696 1.21224 0.93785 1.16714 0.89189 0.96042 0.79014 1.91578 1.80500 1.92947 1.44834 1.21336 0.92019 1.12295 1.00783 1.18575 0.83324 0.88632 0.92444 1.86217 1.14844 1.84702 1.32361 1.23752 0.93642 0.97820 0.84185 1.24096 0.91740 0.93641 1.03357 1.69023 1.02195 1.06910 1.43016 1.19961 0.88872 0.95891 0.90806 1.21390 1.10659 1.02602 1.21880 0.92728 1.25855 0.96795 1.01845 0.94972 1.70039 1.19821 1.39560 1.27687 0.85500 0.77711 0.79388 0.78419 1.20626 1.19634 1.19392 1.24338 0.92537 0.98647 0.98589 1.20324 0.90759 1.10040 0.99713 1.16572 0.88927 0.96587 0.79041 1.91582 1.80339 1.93012 1.44725 0.91425 0.91390 0.84217 0.80116 0.84490 0.88749 0.88734 0.97745 0.99193 0.92603 0.89595 0.90272 0.80515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.57 113.37 1.20 1.49 16 2 O -0.35 -7.13 10.58 -56.95 -0.60 -7.73 16 3 C 0.53 12.92 6.66 70.16 0.47 13.39 16 4 O -0.51 -15.10 16.90 19.70 0.33 -14.77 16 5 C -0.24 -5.44 5.76 -20.02 -0.12 -5.56 16 6 C 0.21 4.31 7.28 22.66 0.17 4.47 16 7 F -0.12 -2.57 16.83 44.97 0.76 -1.81 16 8 C -0.25 -4.38 8.98 22.37 0.20 -4.18 16 9 C 0.22 4.37 6.68 22.61 0.15 4.52 16 10 O -0.27 -6.54 10.18 -90.31 -0.92 -7.46 16 11 C 0.06 1.45 4.05 30.94 0.13 1.58 16 12 C 0.00 0.02 7.52 83.58 0.63 0.64 16 13 N -0.49 -19.70 6.32 -932.86 -5.89 -25.59 16 14 C 0.17 8.65 4.57 85.55 0.39 9.04 16 15 C -0.53 -29.67 9.39 25.60 0.24 -29.43 16 16 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -54.61 13.29 21.45 0.28 -54.32 16 19 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 C -0.01 -0.37 7.56 83.58 0.63 0.26 16 24 C -0.19 -3.55 9.94 22.37 0.22 -3.33 16 25 C 0.21 4.31 7.28 22.66 0.17 4.48 16 26 F -0.12 -2.53 16.83 44.97 0.76 -1.78 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.18 2.47 5.86 -2.91 -0.02 2.45 16 31 H 0.14 2.07 5.89 -2.39 -0.01 2.06 16 32 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.09 2.56 7.91 -2.39 -0.02 2.54 16 34 H 0.00 0.24 8.08 -2.39 -0.02 0.22 16 35 H -0.01 -0.50 7.30 -2.38 -0.02 -0.52 16 36 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.09 2.65 7.42 -2.39 -0.02 2.64 16 38 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -69.70 350.82 2.78 -66.92 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: 1.10 Total: 2.44 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 4.93 Total: -1.96 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -5.61 Total: -79.92 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.19 Total: -29.95 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 1.51 Total: -3.59 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.70 2.78 -66.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233912960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.586 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds