Wall clock time and date at job start Tue Mar 31 2020 15:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34781 * 117.00078 * 2 1 4 4 O 1.21547 * 120.00080 * 359.97438 * 3 2 1 5 5 C 1.47158 * 120.00038 * 179.97438 * 3 2 1 6 6 C 1.40129 * 120.13589 * 269.99621 * 5 3 2 7 7 F 1.35099 * 120.07124 * 0.04339 * 6 5 3 8 8 C 1.37946 * 119.85390 * 180.02562 * 6 5 3 9 9 C 1.38950 * 120.14280 * 0.02562 * 8 6 5 10 10 O 1.35702 * 119.85737 * 179.97438 * 9 8 6 11 11 C 1.42905 * 117.00187 * 354.48299 * 10 9 8 12 12 H 1.08994 * 110.77620 * 321.85955 * 11 10 9 13 13 C 1.55151 * 110.71823 * 198.61970 * 11 10 9 14 14 C 1.55130 * 101.48415 * 205.96923 * 13 11 10 15 15 N 1.47427 * 104.72321 * 37.29795 * 14 13 11 16 16 C 1.36936 * 125.65226 * 155.81486 * 15 14 13 17 17 H 1.07997 * 119.99906 * 194.69099 * 16 15 14 18 18 C 1.38810 * 119.99674 * 14.69129 * 16 15 14 19 19 N 1.31624 * 120.00359 * 26.74275 * 18 16 15 20 20 Si 1.86801 * 120.00014 * 206.73875 * 18 16 15 21 21 H 1.48502 * 109.46848 * 60.00091 * 20 18 16 22 22 H 1.48494 * 109.47061 * 300.00217 * 20 18 16 23 23 H 1.48501 * 109.47165 * 180.02562 * 20 18 16 24 24 C 1.47025 * 108.70136 * 335.55498 * 15 14 13 25 25 C 1.38949 * 120.27785 * 0.25459 * 9 8 6 26 26 C 1.37938 * 120.14206 * 359.44635 * 25 9 8 27 27 F 1.35105 * 120.07370 * 180.29872 * 26 25 9 28 28 H 1.09003 * 109.47235 * 300.01003 * 1 2 3 29 29 H 1.09005 * 109.46763 * 60.00465 * 1 2 3 30 30 H 1.08994 * 109.47415 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.92564 * 180.02562 * 8 6 5 32 32 H 1.09000 * 111.00685 * 324.20899 * 13 11 10 33 33 H 1.08998 * 111.00342 * 88.02582 * 13 11 10 34 34 H 1.08998 * 110.50035 * 278.45708 * 14 13 11 35 35 H 1.08997 * 110.34339 * 156.05857 * 14 13 11 36 36 H 0.97003 * 119.99194 * 5.80720 * 19 18 16 37 37 H 1.08995 * 109.88485 * 120.70399 * 24 15 14 38 38 H 1.08998 * 109.88187 * 241.71643 * 24 15 14 39 39 H 1.08005 * 119.92679 * 179.72294 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5335 1.2779 0.0006 6 6 4.2355 1.3151 1.2127 7 9 3.5648 1.2794 2.3849 8 6 5.6131 1.3878 1.2065 9 6 6.3044 1.4247 0.0017 10 8 7.6595 1.4968 0.0023 11 6 8.3003 1.6532 1.2700 12 1 7.7253 2.3181 1.9145 13 6 9.7490 2.1791 1.0915 14 6 10.4330 1.6423 2.3763 15 7 9.8314 0.3141 2.5940 16 6 10.4049 -0.7178 3.2878 17 1 10.0057 -1.7172 3.1971 18 6 11.4992 -0.4792 4.1078 19 7 11.6740 0.7107 4.6426 20 14 12.7239 -1.8470 4.4524 21 1 13.3261 -2.3056 3.1747 22 1 12.0263 -2.9828 5.1066 23 1 13.7927 -1.3399 5.3500 24 6 8.5110 0.2830 1.9480 25 6 5.6137 1.3941 -1.2036 26 6 4.2366 1.3152 -1.2109 27 9 3.5667 1.2794 -2.3837 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 6.1554 1.4160 2.1400 32 1 10.2090 1.7609 0.1961 33 1 9.7688 3.2686 1.0659 34 1 10.2234 2.2969 3.2222 35 1 11.5083 1.5512 2.2233 36 1 10.9960 1.3958 4.5333 37 1 8.4830 -0.5091 1.1998 38 1 7.7364 0.1139 2.6959 39 1 6.1565 1.4276 -2.1367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233914003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:31 Heat of formation + Delta-G solvation = -149.892462 kcal Electronic energy + Delta-G solvation = -27531.765726 eV Core-core repulsion = 23077.368895 eV Total energy + Delta-G solvation = -4454.396831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.51976 -49.45500 -40.85080 -40.37969 -38.05255 -36.80710 -36.39057 -32.72278 -31.19162 -30.95381 -29.40407 -28.05416 -27.68418 -24.83399 -24.05362 -23.50612 -21.69758 -20.75310 -20.49491 -19.10820 -18.38821 -18.07416 -17.67621 -17.44926 -16.97369 -16.39712 -16.37080 -16.07323 -15.74461 -15.42226 -15.39358 -14.85817 -14.33492 -14.13386 -14.02226 -13.60341 -13.54100 -13.27099 -13.01623 -12.64674 -12.58114 -12.46985 -12.18174 -11.97464 -11.61326 -11.15402 -11.10504 -11.01143 -10.77818 -10.65954 -10.55663 -10.32624 -10.06652 -9.62079 -9.29184 -8.80030 -8.55074 -7.11977 -6.20936 -3.27214 0.39695 0.53536 1.63313 2.26759 2.66761 2.89183 3.36307 3.45197 3.49150 3.66863 3.90195 4.26758 4.32621 4.41923 4.50570 4.67941 4.76681 4.78682 4.85478 4.88707 5.12871 5.15618 5.21954 5.25832 5.32046 5.43968 5.47763 5.67344 5.77361 5.89001 5.93149 6.05481 6.09980 6.28088 6.35505 6.76350 6.81426 7.10144 7.25645 7.62838 8.35241 8.87373 9.67912 10.17673 11.12094 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002721 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.149711 B =10288.788179 C =10829.790478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.346 6.346 3 C 0.527 3.473 4 O -0.485 6.485 5 C -0.233 4.233 6 C 0.216 3.784 7 F -0.116 7.116 8 C -0.255 4.255 9 C 0.226 3.774 10 O -0.284 6.284 11 C 0.062 3.938 12 H 0.087 0.913 13 C -0.125 4.125 14 C 0.143 3.857 15 N -0.599 5.599 16 C -0.339 4.339 17 H 0.068 0.932 18 C -0.023 4.023 19 N -0.918 5.918 20 Si 1.067 2.933 21 H -0.292 1.292 22 H -0.292 1.292 23 H -0.284 1.284 24 C 0.116 3.884 25 C -0.202 4.202 26 C 0.210 3.790 27 F -0.117 7.117 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.163 0.837 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.064 0.936 36 H 0.269 0.731 37 H 0.041 0.959 38 H 0.031 0.969 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 2.039 -11.398 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.262 6.262 3 C 0.369 3.631 4 O -0.371 6.371 5 C -0.236 4.236 6 C 0.196 3.804 7 F -0.095 7.095 8 C -0.275 4.275 9 C 0.177 3.823 10 O -0.194 6.194 11 C 0.007 3.993 12 H 0.105 0.895 13 C -0.164 4.164 14 C 0.018 3.982 15 N -0.328 5.328 16 C -0.467 4.467 17 H 0.086 0.914 18 C -0.225 4.225 19 N -0.559 5.559 20 Si 0.896 3.104 21 H -0.220 1.220 22 H -0.219 1.219 23 H -0.210 1.210 24 C -0.010 4.010 25 C -0.222 4.222 26 C 0.190 3.810 27 F -0.095 7.095 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.181 0.819 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.564 1.875 -10.739 19.002 hybrid contribution -2.128 0.325 -0.455 2.200 sum -17.692 2.200 -11.194 21.051 Atomic orbital electron populations 1.23375 0.75632 1.04164 1.02841 1.86687 1.23853 1.32114 1.83581 1.20521 0.88073 0.82024 0.72514 1.90890 1.66361 1.36026 1.43834 1.18692 0.90841 1.21035 0.93075 1.16722 0.88914 0.95376 0.79377 1.91589 1.80302 1.92796 1.44763 1.21369 0.92586 1.13049 1.00465 1.18489 0.83978 0.87976 0.91812 1.86186 1.14353 1.84658 1.34228 1.23906 0.94454 0.99076 0.81897 0.89545 1.23035 0.91760 1.00188 1.01390 1.21669 0.97781 0.86975 0.91776 1.44443 1.13337 1.12125 1.62883 1.19765 1.15193 0.87249 1.24470 0.91389 1.25801 1.00054 1.02214 0.94397 1.70824 1.39068 1.05747 1.40253 0.83498 0.76480 0.74340 0.76100 1.21961 1.21913 1.20968 1.21804 0.90064 0.93450 0.95707 1.20175 0.91077 1.11914 0.98995 1.16569 0.88783 0.96345 0.79286 1.91580 1.80269 1.92989 1.44645 0.91542 0.91566 0.87595 0.81941 0.89969 0.90592 0.94975 0.91814 0.91957 0.94154 0.95136 0.82059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 101.05 1.07 1.33 16 2 O -0.35 -4.10 10.58 -40.71 -0.43 -4.53 16 3 C 0.53 7.15 6.66 34.35 0.23 7.38 16 4 O -0.48 -7.46 16.90 -19.30 -0.33 -7.79 16 5 C -0.23 -3.01 5.76 -104.86 -0.60 -3.62 16 6 C 0.22 2.79 7.28 -38.98 -0.28 2.50 16 7 F -0.12 -1.57 16.83 2.25 0.04 -1.53 16 8 C -0.26 -3.20 8.72 -39.42 -0.34 -3.55 16 9 C 0.23 2.83 6.63 -39.05 -0.26 2.57 16 10 O -0.28 -3.97 9.86 -18.81 -0.19 -4.15 16 11 C 0.06 0.96 2.76 -24.90 -0.07 0.90 16 12 H 0.09 1.20 6.58 -51.93 -0.34 0.86 16 13 C -0.13 -2.03 6.82 -24.47 -0.17 -2.19 16 14 C 0.14 3.07 5.24 -2.41 -0.01 3.06 16 15 N -0.60 -14.43 3.32 -169.93 -0.56 -14.99 16 16 C -0.34 -9.26 10.05 -15.06 -0.15 -9.42 16 17 H 0.07 1.86 7.96 -52.49 -0.42 1.44 16 18 C -0.02 -0.64 5.10 -17.43 -0.09 -0.73 16 19 N -0.92 -26.71 12.86 55.49 0.71 -25.99 16 20 Si 1.07 24.60 29.99 -169.99 -5.10 19.51 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.12 2.25 6.50 -3.06 -0.02 2.23 16 25 C -0.20 -2.22 9.94 -39.43 -0.39 -2.61 16 26 C 0.21 2.47 7.28 -38.99 -0.28 2.18 16 27 F -0.12 -1.36 16.83 2.25 0.04 -1.32 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.16 2.03 5.27 -52.49 -0.28 1.76 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.03 0.72 6.80 -51.93 -0.35 0.37 16 35 H 0.06 1.50 7.80 -51.93 -0.40 1.10 16 36 H 0.27 7.73 5.83 -40.82 -0.24 7.49 16 37 H 0.04 0.80 8.06 -51.93 -0.42 0.39 16 38 H 0.03 0.59 7.42 -51.93 -0.39 0.21 16 39 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -31.45 342.28 -6.20 -37.66 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.17 Total: -2.04 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.38 Total: 0.04 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.15 Total: -40.99 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.94 Total: -16.48 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.08 Total: -2.85 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.10 Total: 19.51 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.45 -6.20 -37.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233914003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.235 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds