Wall clock time and date at job start Tue Mar 31 2020 15:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34781 * 117.00078 * 2 1 4 4 O 1.21547 * 120.00080 * 359.97438 * 3 2 1 5 5 C 1.47158 * 120.00038 * 179.97438 * 3 2 1 6 6 C 1.40129 * 120.13589 * 269.99621 * 5 3 2 7 7 F 1.35099 * 120.07124 * 0.04339 * 6 5 3 8 8 C 1.37946 * 119.85390 * 180.02562 * 6 5 3 9 9 C 1.38950 * 120.14280 * 0.02562 * 8 6 5 10 10 O 1.35702 * 119.85737 * 179.97438 * 9 8 6 11 11 C 1.42905 * 117.00187 * 354.48299 * 10 9 8 12 12 H 1.08994 * 110.77620 * 321.85955 * 11 10 9 13 13 C 1.55151 * 110.71823 * 198.61970 * 11 10 9 14 14 C 1.55130 * 101.48415 * 205.96923 * 13 11 10 15 15 N 1.47427 * 104.72321 * 37.29795 * 14 13 11 16 16 C 1.36936 * 125.65226 * 155.81486 * 15 14 13 17 17 H 1.07997 * 119.99906 * 194.69099 * 16 15 14 18 18 C 1.38810 * 119.99674 * 14.69129 * 16 15 14 19 19 N 1.31624 * 120.00359 * 26.74275 * 18 16 15 20 20 Si 1.86801 * 120.00014 * 206.73875 * 18 16 15 21 21 H 1.48502 * 109.46848 * 60.00091 * 20 18 16 22 22 H 1.48494 * 109.47061 * 300.00217 * 20 18 16 23 23 H 1.48501 * 109.47165 * 180.02562 * 20 18 16 24 24 C 1.47025 * 108.70136 * 335.55498 * 15 14 13 25 25 C 1.38949 * 120.27785 * 0.25459 * 9 8 6 26 26 C 1.37938 * 120.14206 * 359.44635 * 25 9 8 27 27 F 1.35105 * 120.07370 * 180.29872 * 26 25 9 28 28 H 1.09003 * 109.47235 * 300.01003 * 1 2 3 29 29 H 1.09005 * 109.46763 * 60.00465 * 1 2 3 30 30 H 1.08994 * 109.47415 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.92564 * 180.02562 * 8 6 5 32 32 H 1.09000 * 111.00685 * 324.20899 * 13 11 10 33 33 H 1.08998 * 111.00342 * 88.02582 * 13 11 10 34 34 H 1.08998 * 110.50035 * 278.45708 * 14 13 11 35 35 H 1.08997 * 110.34339 * 156.05857 * 14 13 11 36 36 H 0.97003 * 119.99194 * 5.80720 * 19 18 16 37 37 H 1.08995 * 109.88485 * 120.70399 * 24 15 14 38 38 H 1.08998 * 109.88187 * 241.71643 * 24 15 14 39 39 H 1.08005 * 119.92679 * 179.72294 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5335 1.2779 0.0006 6 6 4.2355 1.3151 1.2127 7 9 3.5648 1.2794 2.3849 8 6 5.6131 1.3878 1.2065 9 6 6.3044 1.4247 0.0017 10 8 7.6595 1.4968 0.0023 11 6 8.3003 1.6532 1.2700 12 1 7.7253 2.3181 1.9145 13 6 9.7490 2.1791 1.0915 14 6 10.4330 1.6423 2.3763 15 7 9.8314 0.3141 2.5940 16 6 10.4049 -0.7178 3.2878 17 1 10.0057 -1.7172 3.1971 18 6 11.4992 -0.4792 4.1078 19 7 11.6740 0.7107 4.6426 20 14 12.7239 -1.8470 4.4524 21 1 13.3261 -2.3056 3.1747 22 1 12.0263 -2.9828 5.1066 23 1 13.7927 -1.3399 5.3500 24 6 8.5110 0.2830 1.9480 25 6 5.6137 1.3941 -1.2036 26 6 4.2366 1.3152 -1.2109 27 9 3.5667 1.2794 -2.3837 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 6.1554 1.4160 2.1400 32 1 10.2090 1.7609 0.1961 33 1 9.7688 3.2686 1.0659 34 1 10.2234 2.2969 3.2222 35 1 11.5083 1.5512 2.2233 36 1 10.9960 1.3958 4.5333 37 1 8.4830 -0.5091 1.1998 38 1 7.7364 0.1139 2.6959 39 1 6.1565 1.4276 -2.1367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233914003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:30 Heat of formation + Delta-G solvation = -167.650934 kcal Electronic energy + Delta-G solvation = -27532.535792 eV Core-core repulsion = 23077.368895 eV Total energy + Delta-G solvation = -4455.166896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.48457 -50.43631 -41.88003 -41.44887 -39.32490 -37.97101 -37.58718 -34.54970 -32.27962 -31.93429 -31.07270 -29.33570 -28.66449 -26.51907 -25.25409 -24.53844 -22.74630 -22.21529 -21.97662 -20.17752 -19.71788 -19.37174 -18.97696 -18.43267 -18.05170 -17.41383 -17.34723 -17.04067 -16.72147 -16.70521 -16.52025 -16.12631 -15.75698 -15.47598 -15.19767 -15.15964 -14.99368 -14.43131 -14.11274 -13.97560 -13.70038 -13.50563 -13.23572 -13.06744 -12.84309 -12.69797 -12.54602 -12.48357 -12.08177 -11.99565 -11.91118 -11.80662 -11.72532 -11.56825 -10.57947 -10.24014 -9.81740 -9.08736 -8.34789 -5.37248 -0.59171 -0.41237 0.60345 1.37416 1.56338 1.59760 1.66465 1.85467 1.92576 2.36524 2.62919 2.92280 3.16338 3.31352 3.36381 3.40316 3.48107 3.52825 3.68418 3.79249 3.87673 4.16435 4.23873 4.29898 4.34244 4.36674 4.40483 4.50721 4.62029 4.71168 4.76600 4.82118 4.86615 4.98007 5.00875 5.15444 5.22385 5.62158 5.96714 6.27643 6.29326 6.85288 7.65226 8.19469 8.98448 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002721 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.149711 B =10288.788179 C =10829.790478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.353 6.353 3 C 0.526 3.474 4 O -0.510 6.510 5 C -0.240 4.240 6 C 0.208 3.792 7 F -0.123 7.123 8 C -0.251 4.251 9 C 0.218 3.782 10 O -0.281 6.281 11 C 0.080 3.920 12 H 0.107 0.893 13 C -0.109 4.109 14 C 0.143 3.857 15 N -0.624 5.624 16 C -0.349 4.349 17 H 0.061 0.939 18 C -0.074 4.074 19 N -0.946 5.946 20 Si 1.115 2.885 21 H -0.280 1.280 22 H -0.276 1.276 23 H -0.291 1.291 24 C 0.111 3.889 25 C -0.181 4.181 26 C 0.211 3.789 27 F -0.115 7.115 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.138 0.862 31 H 0.162 0.838 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.020 0.980 35 H 0.032 0.968 36 H 0.259 0.741 37 H 0.036 0.964 38 H 0.030 0.970 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.655 1.817 -12.951 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.369 3.631 4 O -0.399 6.399 5 C -0.243 4.243 6 C 0.188 3.812 7 F -0.101 7.101 8 C -0.271 4.271 9 C 0.169 3.831 10 O -0.192 6.192 11 C 0.024 3.976 12 H 0.125 0.875 13 C -0.147 4.147 14 C 0.018 3.982 15 N -0.353 5.353 16 C -0.477 4.477 17 H 0.078 0.922 18 C -0.270 4.270 19 N -0.589 5.589 20 Si 0.939 3.061 21 H -0.206 1.206 22 H -0.202 1.202 23 H -0.217 1.217 24 C -0.014 4.014 25 C -0.201 4.201 26 C 0.191 3.809 27 F -0.093 7.093 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.156 0.844 31 H 0.180 0.820 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.360 1.638 -12.323 20.547 hybrid contribution -2.055 0.343 -0.028 2.083 sum -18.414 1.981 -12.352 22.262 Atomic orbital electron populations 1.23744 0.73518 1.06455 1.03160 1.86677 1.25998 1.31186 1.82983 1.20676 0.88369 0.82172 0.71881 1.90872 1.66932 1.36834 1.45253 1.18846 0.90836 1.20987 0.93614 1.16740 0.89042 0.96207 0.79224 1.91570 1.80464 1.92971 1.45144 1.21347 0.92396 1.12688 1.00625 1.18550 0.83355 0.88898 0.92271 1.86169 1.15057 1.85164 1.32796 1.23598 0.94726 0.96677 0.82604 0.87484 1.22892 0.91345 1.02157 0.98355 1.21598 0.96499 0.86006 0.94074 1.44689 1.15590 1.12387 1.62606 1.20002 1.15504 0.88060 1.24164 0.92152 1.27091 1.01825 1.03518 0.94553 1.70917 1.39275 1.06486 1.42221 0.82856 0.74446 0.72427 0.76377 1.20632 1.20182 1.21655 1.21921 0.87937 0.96041 0.95500 1.20337 0.90600 1.09670 0.99446 1.16548 0.88998 0.96387 0.78949 1.91590 1.80305 1.92962 1.44416 0.91466 0.91074 0.84366 0.82038 0.89598 0.87021 0.96269 0.94936 0.92999 0.94624 0.95177 0.79528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.57 113.37 1.20 1.54 16 2 O -0.35 -7.94 10.58 -56.93 -0.60 -8.54 16 3 C 0.53 13.83 6.66 70.16 0.47 14.29 16 4 O -0.51 -15.45 16.90 19.68 0.33 -15.12 16 5 C -0.24 -5.88 5.76 -20.02 -0.12 -6.00 16 6 C 0.21 5.13 7.28 22.66 0.17 5.30 16 7 F -0.12 -3.26 16.83 44.97 0.76 -2.50 16 8 C -0.25 -5.88 8.72 22.37 0.20 -5.68 16 9 C 0.22 4.86 6.63 22.61 0.15 5.01 16 10 O -0.28 -7.03 9.86 -90.23 -0.89 -7.92 16 11 C 0.08 2.30 2.76 31.78 0.09 2.39 16 12 H 0.11 2.69 6.58 -2.39 -0.02 2.67 16 13 C -0.11 -3.31 6.82 32.06 0.22 -3.09 16 14 C 0.14 6.18 5.24 86.93 0.46 6.63 16 15 N -0.62 -30.28 3.32 -691.55 -2.29 -32.57 16 16 C -0.35 -19.31 10.05 84.03 0.84 -18.47 16 17 H 0.06 3.34 7.96 -2.91 -0.02 3.31 16 18 C -0.07 -4.13 5.10 84.86 0.43 -3.69 16 19 N -0.95 -56.28 12.86 21.65 0.28 -56.01 16 20 Si 1.11 49.98 29.99 68.60 2.06 52.04 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 24 C 0.11 4.24 6.50 86.73 0.56 4.81 16 25 C -0.18 -3.43 9.94 22.37 0.22 -3.21 16 26 C 0.21 4.50 7.28 22.66 0.17 4.67 16 27 F -0.11 -2.42 16.83 44.97 0.76 -1.66 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.16 3.80 5.27 -2.91 -0.02 3.79 16 32 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.02 0.88 6.80 -2.39 -0.02 0.87 16 35 H 0.03 1.57 7.80 -2.39 -0.02 1.55 16 36 H 0.26 15.38 5.83 -92.71 -0.54 14.84 16 37 H 0.04 1.39 8.06 -2.39 -0.02 1.37 16 38 H 0.03 1.15 7.42 -2.39 -0.02 1.14 16 39 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -68.96 342.28 6.78 -62.17 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.33 Total: 5.62 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.05 Total: 4.50 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -2.01 Total: -88.58 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.16 Total: -31.58 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 1.51 Total: -4.17 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.06 Total: 52.04 kcal Total: -68.96 6.78 -62.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233914003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.477 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds