Wall clock time and date at job start Tue Mar 31 2020 15:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34780 * 116.99878 * 2 1 4 4 O 1.21546 * 120.00004 * 0.02562 * 3 2 1 5 5 C 1.47157 * 120.00102 * 179.97438 * 3 2 1 6 6 C 1.40121 * 120.14060 * 270.00336 * 5 3 2 7 7 F 1.35099 * 120.06907 * 0.04066 * 6 5 3 8 8 C 1.37946 * 119.85925 * 180.02562 * 6 5 3 9 9 C 1.38959 * 120.13742 * 0.02562 * 8 6 5 10 10 O 1.35695 * 119.85619 * 179.97438 * 9 8 6 11 11 C 1.42908 * 116.99840 * 185.53855 * 10 9 8 12 12 H 1.08993 * 110.88126 * 32.43632 * 11 10 9 13 13 C 1.55158 * 111.00209 * 156.31398 * 11 10 9 14 14 C 1.54330 * 102.93882 * 153.57599 * 13 11 10 15 15 N 1.47022 * 107.27225 * 337.81216 * 14 13 11 16 16 C 1.36940 * 125.64865 * 178.99353 * 15 14 13 17 17 H 1.07996 * 119.99904 * 179.97438 * 16 15 14 18 18 C 1.38809 * 119.99743 * 359.97397 * 16 15 14 19 19 N 1.31622 * 120.00326 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00104 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47066 * 59.99748 * 20 18 16 22 22 H 1.48493 * 109.47427 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46895 * 300.00168 * 20 18 16 24 24 C 1.47471 * 108.72265 * 358.96770 * 15 14 13 25 25 C 1.38952 * 120.28089 * 0.25389 * 9 8 6 26 26 C 1.37940 * 120.13977 * 359.44820 * 25 9 8 27 27 F 1.35107 * 120.07612 * 180.25483 * 26 25 9 28 28 H 1.08997 * 109.47056 * 300.00000 * 1 2 3 29 29 H 1.08998 * 109.47349 * 60.00060 * 1 2 3 30 30 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.93243 * 180.02562 * 8 6 5 32 32 H 1.08990 * 110.72160 * 271.94288 * 13 11 10 33 33 H 1.08998 * 110.71761 * 35.21677 * 13 11 10 34 34 H 1.09004 * 109.87753 * 97.22405 * 14 13 11 35 35 H 1.09001 * 109.88175 * 218.38655 * 14 13 11 36 36 H 0.96995 * 120.00304 * 179.97438 * 19 18 16 37 37 H 1.08996 * 110.35256 * 265.25904 * 24 15 14 38 38 H 1.09001 * 110.40322 * 142.91916 * 24 15 14 39 39 H 1.07998 * 119.93192 * 179.72642 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 0.0005 5 6 3.5334 1.2780 0.0006 6 6 4.2355 1.3150 1.2126 7 9 3.5648 1.2792 2.3848 8 6 5.6131 1.3878 1.2064 9 6 6.3043 1.4249 0.0015 10 8 7.6593 1.4970 0.0020 11 6 8.3011 1.6546 -1.2651 12 1 7.6801 2.2374 -1.9453 13 6 9.7032 2.2989 -1.1020 14 6 10.4684 1.7785 -2.3371 15 7 9.7891 0.5550 -2.7879 16 6 10.1464 -0.2035 -3.8706 17 1 9.5807 -1.0891 -4.1198 18 6 11.2356 0.1659 -4.6477 19 7 11.9247 1.2455 -4.3443 20 14 11.7235 -0.8691 -6.1243 21 1 10.5952 -0.9188 -7.0884 22 1 12.9098 -0.2649 -6.7821 23 1 12.0529 -2.2461 -5.6764 24 6 8.6595 0.2791 -1.8809 25 6 5.6136 1.3944 -1.2038 26 6 4.2364 1.3154 -1.2111 27 9 3.5664 1.2806 -2.3838 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 6.1554 1.4160 2.1398 32 1 9.6326 3.3863 -1.1221 33 1 10.1790 1.9591 -0.1822 34 1 10.4472 2.5273 -3.1289 35 1 11.4995 1.5517 -2.0659 36 1 12.6860 1.5035 -4.8871 37 1 8.9620 -0.4188 -1.1001 38 1 7.8122 -0.1189 -2.4393 39 1 6.1562 1.4280 -2.1369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233914004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:33 Heat of formation + Delta-G solvation = -146.631826 kcal Electronic energy + Delta-G solvation = -27486.802623 eV Core-core repulsion = 23032.547183 eV Total energy + Delta-G solvation = -4454.255439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.47768 -49.40031 -40.79082 -40.28493 -37.90850 -36.73775 -36.22529 -32.51798 -31.14198 -30.89022 -29.41065 -27.99154 -27.55344 -24.94094 -24.05749 -23.43089 -21.64439 -20.66464 -20.31251 -19.11809 -18.34460 -17.97257 -17.43809 -17.06967 -16.89619 -16.33245 -16.29447 -15.98517 -15.69670 -15.28911 -15.11632 -14.80843 -14.54815 -14.25716 -14.08327 -13.51746 -13.47157 -12.94281 -12.73772 -12.55434 -12.47737 -12.36617 -12.13890 -11.83274 -11.51831 -11.12691 -11.07024 -10.99013 -10.87054 -10.49368 -10.43460 -10.19947 -10.06769 -9.82277 -9.23711 -8.74334 -8.69471 -7.01398 -5.84227 -3.19783 0.45403 0.59106 1.67054 2.30558 2.74770 2.95142 3.34666 3.38878 3.40107 3.43016 3.96201 4.30807 4.37202 4.40676 4.51997 4.74045 4.79077 4.87734 4.94094 5.08241 5.17500 5.30129 5.32591 5.40021 5.42791 5.53140 5.55221 5.74761 5.92230 5.95546 6.11414 6.23595 6.25890 6.37366 6.46299 7.19091 7.29148 7.39590 7.41583 7.67594 8.09690 9.07123 9.66581 10.29153 11.27422 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.002809 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.118172 B = 9966.625050 C =10895.368664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.347 6.347 3 C 0.527 3.473 4 O -0.485 6.485 5 C -0.235 4.235 6 C 0.210 3.790 7 F -0.118 7.118 8 C -0.204 4.204 9 C 0.228 3.772 10 O -0.285 6.285 11 C 0.055 3.945 12 H 0.089 0.911 13 C -0.135 4.135 14 C 0.177 3.823 15 N -0.601 5.601 16 C -0.235 4.235 17 H 0.080 0.920 18 C -0.004 4.004 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.119 3.881 25 C -0.256 4.256 26 C 0.216 3.784 27 F -0.117 7.117 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.161 0.839 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.255 0.745 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.942 0.372 11.027 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.263 6.263 3 C 0.369 3.631 4 O -0.371 6.371 5 C -0.238 4.238 6 C 0.190 3.810 7 F -0.096 7.096 8 C -0.223 4.223 9 C 0.179 3.821 10 O -0.195 6.195 11 C -0.001 4.001 12 H 0.107 0.893 13 C -0.173 4.173 14 C 0.053 3.947 15 N -0.329 5.329 16 C -0.363 4.363 17 H 0.098 0.902 18 C -0.201 4.201 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.008 4.008 25 C -0.276 4.276 26 C 0.196 3.804 27 F -0.095 7.095 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.179 0.821 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.897 0.673 11.004 20.176 hybrid contribution -0.214 -0.476 -1.011 1.138 sum -17.111 0.197 9.994 19.817 Atomic orbital electron populations 1.23368 0.75693 1.04125 1.02828 1.86686 1.23806 1.32162 1.83611 1.20535 0.88104 0.81995 0.72479 1.90888 1.66380 1.36038 1.43841 1.18680 0.90770 1.21271 0.93098 1.16572 0.88790 0.96413 0.79263 1.91575 1.80247 1.93010 1.44734 1.20176 0.91036 1.12083 0.99019 1.18505 0.84087 0.87759 0.91742 1.86152 1.14229 1.84449 1.34663 1.24219 0.94365 0.99969 0.81543 0.89305 1.23083 0.92455 0.99793 1.01991 1.21244 0.94589 0.88407 0.90486 1.44329 1.30454 1.28036 1.30084 1.19007 1.10485 1.05052 1.01727 0.90227 1.24823 0.97882 0.97932 0.99459 1.69915 1.21232 1.25189 1.40522 0.86151 0.77817 0.79367 0.82133 1.21015 1.21489 1.21015 1.21947 0.92257 0.92883 0.93674 1.21368 0.92554 1.13013 1.00631 1.16730 0.88949 0.95373 0.79332 1.91590 1.80349 1.92808 1.44744 0.91589 0.91557 0.87630 0.82115 0.91012 0.90788 0.92864 0.92970 0.93445 0.94831 0.93603 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 101.05 1.07 1.33 16 2 O -0.35 -4.11 10.58 -40.71 -0.43 -4.54 16 3 C 0.53 7.19 6.66 34.35 0.23 7.42 16 4 O -0.49 -7.53 16.90 -19.30 -0.33 -7.86 16 5 C -0.23 -3.05 5.76 -104.86 -0.60 -3.66 16 6 C 0.21 2.47 7.28 -38.98 -0.28 2.19 16 7 F -0.12 -1.37 16.83 2.25 0.04 -1.34 16 8 C -0.20 -2.24 9.94 -39.42 -0.39 -2.63 16 9 C 0.23 2.86 6.68 -39.05 -0.26 2.60 16 10 O -0.28 -4.00 9.93 -18.79 -0.19 -4.19 16 11 C 0.06 0.87 2.80 -24.58 -0.07 0.81 16 12 H 0.09 1.32 6.20 -51.93 -0.32 1.00 16 13 C -0.13 -2.28 6.69 -24.89 -0.17 -2.44 16 14 C 0.18 3.97 5.37 -3.06 -0.02 3.96 16 15 N -0.60 -14.40 3.40 -170.03 -0.58 -14.98 16 16 C -0.23 -6.24 10.28 -15.06 -0.15 -6.40 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 18 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 19 N -0.92 -25.86 10.31 55.49 0.57 -25.29 16 20 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.12 2.27 6.86 -2.50 -0.02 2.26 16 25 C -0.26 -3.23 8.90 -39.43 -0.35 -3.58 16 26 C 0.22 2.80 7.28 -38.98 -0.28 2.52 16 27 F -0.12 -1.58 16.83 2.25 0.04 -1.55 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 35 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.84 7.80 -51.93 -0.41 0.43 16 39 H 0.17 2.08 5.61 -52.49 -0.29 1.79 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -30.09 343.75 -6.41 -36.50 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.30 Total: -2.39 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.40 Total: 4.16 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.01 Total: -40.27 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.94 Total: -16.59 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.09 -6.41 -36.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233914004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.131 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds