Wall clock time and date at job start Tue Mar 31 2020 15:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34780 * 116.99878 * 2 1 4 4 O 1.21546 * 120.00004 * 0.02562 * 3 2 1 5 5 C 1.47157 * 120.00102 * 179.97438 * 3 2 1 6 6 C 1.40121 * 120.14060 * 270.00336 * 5 3 2 7 7 F 1.35099 * 120.06907 * 0.04066 * 6 5 3 8 8 C 1.37946 * 119.85925 * 180.02562 * 6 5 3 9 9 C 1.38959 * 120.13742 * 0.02562 * 8 6 5 10 10 O 1.35695 * 119.85619 * 179.97438 * 9 8 6 11 11 C 1.42908 * 116.99840 * 185.53855 * 10 9 8 12 12 H 1.08993 * 110.88126 * 32.43632 * 11 10 9 13 13 C 1.55158 * 111.00209 * 156.31398 * 11 10 9 14 14 C 1.54330 * 102.93882 * 153.57599 * 13 11 10 15 15 N 1.47022 * 107.27225 * 337.81216 * 14 13 11 16 16 C 1.36940 * 125.64865 * 178.99353 * 15 14 13 17 17 H 1.07996 * 119.99904 * 179.97438 * 16 15 14 18 18 C 1.38809 * 119.99743 * 359.97397 * 16 15 14 19 19 N 1.31622 * 120.00326 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00104 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47066 * 59.99748 * 20 18 16 22 22 H 1.48493 * 109.47427 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46895 * 300.00168 * 20 18 16 24 24 C 1.47471 * 108.72265 * 358.96770 * 15 14 13 25 25 C 1.38952 * 120.28089 * 0.25389 * 9 8 6 26 26 C 1.37940 * 120.13977 * 359.44820 * 25 9 8 27 27 F 1.35107 * 120.07612 * 180.25483 * 26 25 9 28 28 H 1.08997 * 109.47056 * 300.00000 * 1 2 3 29 29 H 1.08998 * 109.47349 * 60.00060 * 1 2 3 30 30 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.93243 * 180.02562 * 8 6 5 32 32 H 1.08990 * 110.72160 * 271.94288 * 13 11 10 33 33 H 1.08998 * 110.71761 * 35.21677 * 13 11 10 34 34 H 1.09004 * 109.87753 * 97.22405 * 14 13 11 35 35 H 1.09001 * 109.88175 * 218.38655 * 14 13 11 36 36 H 0.96995 * 120.00304 * 179.97438 * 19 18 16 37 37 H 1.08996 * 110.35256 * 265.25904 * 24 15 14 38 38 H 1.09001 * 110.40322 * 142.91916 * 24 15 14 39 39 H 1.07998 * 119.93192 * 179.72642 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 0.0005 5 6 3.5334 1.2780 0.0006 6 6 4.2355 1.3150 1.2126 7 9 3.5648 1.2792 2.3848 8 6 5.6131 1.3878 1.2064 9 6 6.3043 1.4249 0.0015 10 8 7.6593 1.4970 0.0020 11 6 8.3011 1.6546 -1.2651 12 1 7.6801 2.2374 -1.9453 13 6 9.7032 2.2989 -1.1020 14 6 10.4684 1.7785 -2.3371 15 7 9.7891 0.5550 -2.7879 16 6 10.1464 -0.2035 -3.8706 17 1 9.5807 -1.0891 -4.1198 18 6 11.2356 0.1659 -4.6477 19 7 11.9247 1.2455 -4.3443 20 14 11.7235 -0.8691 -6.1243 21 1 10.5952 -0.9188 -7.0884 22 1 12.9098 -0.2649 -6.7821 23 1 12.0529 -2.2461 -5.6764 24 6 8.6595 0.2791 -1.8809 25 6 5.6136 1.3944 -1.2038 26 6 4.2364 1.3154 -1.2111 27 9 3.5664 1.2806 -2.3838 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 6.1554 1.4160 2.1398 32 1 9.6326 3.3863 -1.1221 33 1 10.1790 1.9591 -0.1822 34 1 10.4472 2.5273 -3.1289 35 1 11.4995 1.5517 -2.0659 36 1 12.6860 1.5035 -4.8871 37 1 8.9620 -0.4188 -1.1001 38 1 7.8122 -0.1189 -2.4393 39 1 6.1562 1.4280 -2.1369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233914004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:33 Heat of formation + Delta-G solvation = -163.085348 kcal Electronic energy + Delta-G solvation = -27487.516101 eV Core-core repulsion = 23032.547183 eV Total energy + Delta-G solvation = -4454.968918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.43324 -50.39604 -41.81329 -41.36465 -39.15989 -37.85258 -37.50422 -34.33807 -32.24668 -31.87101 -31.08582 -29.19924 -28.62998 -26.63454 -25.19344 -24.48601 -22.69681 -22.12608 -21.83802 -20.17666 -19.34737 -19.19347 -18.71185 -18.38385 -17.97420 -17.32117 -17.28168 -16.97139 -16.74960 -16.67525 -16.37805 -16.19099 -15.81160 -15.63338 -15.13685 -14.94383 -14.40226 -14.25847 -13.95320 -13.91137 -13.75095 -13.53543 -13.20400 -12.99320 -12.93022 -12.80015 -12.58794 -12.15189 -12.08645 -12.03645 -11.97066 -11.84748 -11.62746 -11.49971 -10.71033 -10.18784 -9.74960 -8.94923 -7.87044 -5.23703 -0.53817 -0.35906 0.63732 1.41195 1.48373 1.50584 1.56520 1.64468 1.98091 2.40813 2.51008 2.98081 3.32325 3.40289 3.41753 3.47368 3.57567 3.71448 3.81675 3.90967 4.00815 4.19051 4.26031 4.35583 4.40435 4.53485 4.57935 4.63990 4.65668 4.78939 4.85919 4.95290 5.00706 5.01847 5.22414 5.44172 5.61304 5.72931 6.03840 6.18357 6.30809 7.07625 7.72737 8.34602 9.22908 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.002809 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.118172 B = 9966.625050 C =10895.368664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.352 6.352 3 C 0.526 3.474 4 O -0.512 6.512 5 C -0.241 4.241 6 C 0.211 3.789 7 F -0.116 7.116 8 C -0.182 4.182 9 C 0.220 3.780 10 O -0.281 6.281 11 C 0.075 3.925 12 H 0.102 0.898 13 C -0.121 4.121 14 C 0.183 3.817 15 N -0.623 5.623 16 C -0.246 4.246 17 H 0.084 0.916 18 C -0.061 4.061 19 N -0.949 5.949 20 Si 0.977 3.023 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.278 1.278 24 C 0.115 3.885 25 C -0.251 4.251 26 C 0.208 3.792 27 F -0.124 7.124 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.138 0.862 31 H 0.187 0.813 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.023 0.977 35 H 0.016 0.984 36 H 0.249 0.751 37 H 0.034 0.966 38 H 0.054 0.946 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.253 -0.153 12.154 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.369 3.631 4 O -0.400 6.400 5 C -0.244 4.244 6 C 0.190 3.810 7 F -0.094 7.094 8 C -0.201 4.201 9 C 0.171 3.829 10 O -0.191 6.191 11 C 0.018 3.982 12 H 0.120 0.880 13 C -0.159 4.159 14 C 0.058 3.942 15 N -0.351 5.351 16 C -0.375 4.375 17 H 0.102 0.898 18 C -0.254 4.254 19 N -0.597 5.597 20 Si 0.805 3.195 21 H -0.202 1.202 22 H -0.221 1.221 23 H -0.204 1.204 24 C -0.011 4.011 25 C -0.271 4.271 26 C 0.188 3.812 27 F -0.102 7.102 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.204 0.796 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.034 0.966 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.251 0.121 12.160 21.932 hybrid contribution 0.055 -0.384 -1.285 1.342 sum -18.196 -0.263 10.875 21.200 Atomic orbital electron populations 1.23737 0.73583 1.06436 1.03119 1.86676 1.25939 1.31189 1.82995 1.20695 0.88409 0.82148 0.71828 1.90871 1.66966 1.36877 1.45297 1.18836 0.90756 1.21195 0.93647 1.16552 0.89008 0.96468 0.78923 1.91584 1.80284 1.92985 1.44511 1.20335 0.90547 1.09790 0.99471 1.18557 0.83411 0.88706 0.92214 1.86133 1.14972 1.85001 1.33038 1.23812 0.94323 0.97627 0.82413 0.88022 1.22886 0.92311 1.01273 0.99435 1.20988 0.93849 0.87452 0.91909 1.44594 1.32074 1.28222 1.30223 1.19392 1.10311 1.05363 1.02387 0.89805 1.25617 0.98306 0.99255 1.02238 1.70126 1.21523 1.26680 1.41410 0.85175 0.77211 0.77947 0.79131 1.20236 1.22091 1.20394 1.22088 0.90960 0.94989 0.93085 1.21341 0.92353 1.12607 1.00774 1.16745 0.89074 0.96205 0.79171 1.91571 1.80512 1.92982 1.45123 0.91132 0.91506 0.84354 0.79568 0.88362 0.89705 0.95883 0.96553 0.94195 0.94847 0.92773 0.81845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.57 113.37 1.20 1.54 16 2 O -0.35 -7.88 10.58 -56.91 -0.60 -8.48 16 3 C 0.53 13.84 6.66 70.16 0.47 14.30 16 4 O -0.51 -15.58 16.90 19.69 0.33 -15.25 16 5 C -0.24 -5.91 5.76 -20.02 -0.12 -6.02 16 6 C 0.21 4.48 7.28 22.66 0.17 4.64 16 7 F -0.12 -2.44 16.83 44.97 0.76 -1.68 16 8 C -0.18 -3.43 9.94 22.37 0.22 -3.21 16 9 C 0.22 4.88 6.68 22.61 0.15 5.03 16 10 O -0.28 -7.03 9.93 -90.14 -0.90 -7.93 16 11 C 0.07 2.21 2.80 31.99 0.09 2.30 16 12 H 0.10 2.79 6.20 -2.39 -0.01 2.77 16 13 C -0.12 -3.88 6.69 31.79 0.21 -3.67 16 14 C 0.18 8.32 5.37 86.73 0.47 8.79 16 15 N -0.62 -29.99 3.40 -691.86 -2.35 -32.34 16 16 C -0.25 -13.16 10.28 84.03 0.86 -12.29 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 18 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 19 N -0.95 -54.78 10.31 21.65 0.22 -54.56 16 20 Si 0.98 44.23 29.55 68.60 2.03 46.25 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 C 0.11 4.23 6.86 86.85 0.60 4.82 16 25 C -0.25 -5.85 8.90 22.37 0.20 -5.66 16 26 C 0.21 5.12 7.28 22.66 0.17 5.29 16 27 F -0.12 -3.27 16.83 44.97 0.76 -2.51 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.19 2.56 8.06 -2.91 -0.02 2.53 16 32 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.08 2.55 8.14 -2.39 -0.02 2.54 16 34 H 0.02 1.17 7.38 -2.39 -0.02 1.15 16 35 H 0.02 0.84 7.51 -2.39 -0.02 0.82 16 36 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 37 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 1.90 7.80 -2.39 -0.02 1.88 16 39 H 0.16 3.85 5.61 -2.91 -0.02 3.83 16 Total: -1.00 -65.81 343.75 6.50 -59.31 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.10 Total: 4.18 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 5.15 Total: 13.00 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.13 Total: -86.90 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.16 Total: -31.66 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 1.51 Total: -4.19 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.81 6.50 -59.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233914004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.772 kcal (2) G-P(sol) polarization free energy of solvation -65.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds