Wall clock time and date at job start Tue Mar 31 2020 15:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34753 * 116.99596 * 2 1 4 4 O 1.21505 * 120.00108 * 0.02562 * 3 2 1 5 5 C 1.47474 * 119.99872 * 180.02562 * 3 2 1 6 6 C 1.39775 * 120.07975 * 180.02562 * 5 3 2 7 7 C 1.37911 * 119.92164 * 179.97438 * 6 5 3 8 8 F 1.35101 * 119.96362 * 180.02562 * 7 6 5 9 9 C 1.39112 * 120.07641 * 359.97281 * 7 6 5 10 10 O 1.35808 * 119.91831 * 180.02562 * 9 7 6 11 11 C 1.42904 * 116.99879 * 90.00000 * 10 9 7 12 12 C 1.53514 * 114.17059 * 210.00059 * 11 10 9 13 13 N 1.47483 * 87.92777 * 220.13896 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 C 1.39110 * 120.16302 * 0.29654 * 9 7 6 25 25 F 1.35102 * 119.96160 * 179.72680 * 24 9 7 26 26 C 1.37910 * 120.07596 * 359.45136 * 24 9 7 27 27 H 1.09000 * 109.47442 * 299.99415 * 1 2 3 28 28 H 1.08999 * 109.47650 * 60.00100 * 1 2 3 29 29 H 1.09010 * 109.46665 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.04136 * 359.97438 * 6 5 3 31 31 H 1.09002 * 113.25611 * 342.95675 * 11 10 9 32 32 H 1.09000 * 113.47331 * 105.37574 * 12 11 10 33 33 H 1.08995 * 113.52785 * 334.91164 * 12 11 10 34 34 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 35 35 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 38 38 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 39 39 H 1.08007 * 120.03685 * 180.27067 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2197 0.0005 5 6 3.5364 1.2780 -0.0006 6 6 4.1726 2.5225 0.0000 7 6 5.5500 2.5909 0.0000 8 9 6.1659 3.7934 0.0010 9 6 6.3061 1.4232 0.0000 10 8 7.6623 1.4944 0.0005 11 6 8.3097 1.5281 1.2741 12 6 9.6372 2.2989 1.2842 13 7 10.1791 1.2479 2.1655 14 6 11.5539 0.8981 1.7838 15 6 12.1587 0.0114 2.8415 16 1 11.5800 -0.2645 3.7106 17 6 13.4515 -0.4470 2.7003 18 7 14.1565 -0.1107 1.6422 19 14 14.2014 -1.5456 4.0118 20 1 15.5911 -1.8992 3.6259 21 1 14.2156 -0.8266 5.3110 22 1 13.3934 -2.7848 4.1407 23 6 9.2092 0.3172 1.5589 24 6 5.6764 0.1828 -0.0062 25 9 6.4146 -0.9487 -0.0117 26 6 4.2994 0.1067 -0.0010 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.5863 3.4295 0.0004 31 1 7.6371 1.7865 2.0920 32 1 9.5687 3.2752 1.7640 33 1 10.1230 2.3415 0.3094 34 1 12.1473 1.8077 1.6892 35 1 11.5431 0.3706 0.8300 36 1 15.0660 -0.4328 1.5430 37 1 9.5803 -0.1697 0.6570 38 1 8.7781 -0.3860 2.2715 39 1 3.8111 -0.8567 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234011105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:18 Heat of formation + Delta-G solvation = -134.276892 kcal Electronic energy + Delta-G solvation = -27024.881527 eV Core-core repulsion = 22571.161837 eV Total energy + Delta-G solvation = -4453.719689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.29080 -49.22202 -41.07595 -40.15880 -38.92818 -37.20135 -36.73096 -32.91710 -31.23109 -30.92132 -29.27554 -28.08515 -25.62848 -25.40923 -24.42420 -23.45741 -21.96378 -21.47759 -19.67678 -19.12872 -18.42627 -18.12653 -17.24803 -16.93800 -16.72839 -16.56837 -16.28592 -15.97673 -15.57614 -15.50033 -15.28987 -14.58581 -14.45434 -14.38353 -14.24059 -13.88390 -13.32481 -13.08937 -12.96022 -12.80825 -12.52386 -12.27558 -12.16439 -12.06850 -11.61339 -11.45478 -11.31537 -11.15711 -10.93388 -10.63706 -10.29038 -9.87749 -9.65464 -9.32287 -9.29306 -9.24326 -8.46501 -8.03297 -6.05876 -4.07655 -0.20006 0.43713 1.77122 2.04150 2.78328 3.14272 3.32886 3.36446 3.39684 3.49249 3.78084 4.10036 4.22805 4.39466 4.40844 4.63038 4.66649 4.72532 4.80181 4.81751 4.95463 5.06343 5.10043 5.25141 5.29319 5.38058 5.49166 5.63988 5.77524 5.93424 5.97016 6.09498 6.21904 6.24960 6.47214 7.11282 7.15201 7.21026 7.57931 7.78465 8.03700 8.38448 8.98897 9.56346 11.05147 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.002424 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.302857 B =11546.930721 C =12298.495295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.516 3.484 4 O -0.496 6.496 5 C -0.085 4.085 6 C -0.089 4.089 7 C 0.102 3.898 8 F -0.113 7.113 9 C 0.076 3.924 10 O -0.307 6.307 11 C 0.050 3.950 12 C 0.002 3.998 13 N -0.461 5.461 14 C 0.162 3.838 15 C -0.507 4.507 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.276 1.276 22 H -0.277 1.277 23 C 0.000 4.000 24 C 0.103 3.897 25 F -0.110 7.110 26 C -0.095 4.095 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.162 0.838 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.007 0.993 36 H 0.263 0.737 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.081 1.652 -5.354 27.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.361 3.639 4 O -0.384 6.384 5 C -0.087 4.087 6 C -0.108 4.108 7 C 0.082 3.918 8 F -0.091 7.091 9 C 0.029 3.971 10 O -0.222 6.222 11 C -0.005 4.005 12 C -0.127 4.127 13 N -0.185 5.185 14 C 0.036 3.964 15 C -0.546 4.546 16 H 0.082 0.918 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.729 3.271 20 H -0.213 1.213 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.129 4.129 24 C 0.083 3.917 25 F -0.089 7.089 26 C -0.114 4.114 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.179 0.821 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -26.864 2.012 -4.859 27.374 hybrid contribution 0.660 -0.682 -0.152 0.962 sum -26.203 1.329 -5.011 26.711 Atomic orbital electron populations 1.23363 0.75211 1.04191 1.02915 1.86549 1.24117 1.32002 1.84089 1.20719 0.88375 0.81809 0.73033 1.90883 1.66473 1.35929 1.45162 1.18489 0.89729 0.93012 1.07420 1.21144 0.92134 0.98920 0.98579 1.17451 0.89898 0.80697 1.03801 1.91595 1.82825 1.41187 1.93486 1.19066 0.85955 0.90413 1.01636 1.86214 1.12273 1.92846 1.30912 1.24695 0.92939 1.00253 0.82570 1.24102 0.91904 0.98450 0.98264 1.69062 1.05571 1.03053 1.40849 1.20289 0.83379 0.96819 0.95924 1.21032 0.97972 1.29308 1.06283 0.91842 1.25014 0.97068 0.96680 0.95951 1.69948 1.10360 1.45538 1.27980 0.86504 0.77995 0.80798 0.81788 1.21311 1.20122 1.20215 1.24283 0.93617 0.95711 0.99297 1.17581 0.88900 0.82019 1.03201 1.91619 1.76541 1.47359 1.93333 1.21419 0.91204 1.00253 0.98545 0.91515 0.91532 0.87598 0.82058 0.88105 0.89624 0.90698 0.95013 0.97513 0.92776 0.90455 0.89964 0.81941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.17 10.56 101.05 1.07 1.24 16 2 O -0.35 -2.64 9.81 -40.64 -0.40 -3.04 16 3 C 0.52 4.71 7.89 34.49 0.27 4.98 16 4 O -0.50 -5.55 16.13 -19.27 -0.31 -5.86 16 5 C -0.08 -0.75 5.87 -104.98 -0.62 -1.37 16 6 C -0.09 -0.82 9.56 -39.13 -0.37 -1.19 16 7 C 0.10 1.14 7.30 -39.38 -0.29 0.85 16 8 F -0.11 -1.39 17.10 2.25 0.04 -1.35 16 9 C 0.08 0.97 5.63 -38.93 -0.22 0.75 16 10 O -0.31 -4.72 9.82 -19.14 -0.19 -4.91 16 11 C 0.05 0.80 4.71 -26.20 -0.12 0.68 16 12 C 0.00 0.03 7.52 -7.53 -0.06 -0.02 16 13 N -0.46 -10.02 6.32 -246.08 -1.55 -11.58 16 14 C 0.16 4.24 4.57 -4.98 -0.02 4.21 16 15 C -0.51 -14.48 9.39 -34.44 -0.32 -14.80 16 16 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 19 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 C 0.00 0.00 7.56 -7.54 -0.06 -0.05 16 24 C 0.10 1.16 7.30 -39.38 -0.29 0.87 16 25 F -0.11 -1.42 17.10 2.25 0.04 -1.38 16 26 C -0.10 -0.82 9.58 -39.12 -0.37 -1.19 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.11 0.23 8.14 -51.92 -0.42 -0.20 16 30 H 0.16 1.30 7.64 -52.49 -0.40 0.90 16 31 H 0.10 1.44 7.96 -51.93 -0.41 1.03 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.07 1.38 7.91 -51.93 -0.41 0.97 16 34 H 0.03 0.88 8.08 -51.92 -0.42 0.46 16 35 H 0.01 0.19 7.30 -51.93 -0.38 -0.19 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.08 1.55 7.42 -51.93 -0.39 1.16 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.16 1.06 7.60 -52.48 -0.40 0.66 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -32.14 354.06 -7.29 -39.42 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -4.47 Total: -3.72 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.50 Total: -3.60 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.82 Total: -37.67 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.90 Total: -13.81 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.08 Total: -2.74 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.14 -7.29 -39.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234011105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.852 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds