Wall clock time and date at job start Tue Mar 31 2020 15:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34753 * 116.99596 * 2 1 4 4 O 1.21505 * 120.00108 * 0.02562 * 3 2 1 5 5 C 1.47474 * 119.99872 * 180.02562 * 3 2 1 6 6 C 1.39775 * 120.07975 * 180.02562 * 5 3 2 7 7 C 1.37911 * 119.92164 * 179.97438 * 6 5 3 8 8 F 1.35101 * 119.96362 * 180.02562 * 7 6 5 9 9 C 1.39112 * 120.07641 * 359.97281 * 7 6 5 10 10 O 1.35808 * 119.91831 * 180.02562 * 9 7 6 11 11 C 1.42904 * 116.99879 * 90.00000 * 10 9 7 12 12 C 1.53514 * 114.17059 * 210.00059 * 11 10 9 13 13 N 1.47483 * 87.92777 * 220.13896 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 C 1.39110 * 120.16302 * 0.29654 * 9 7 6 25 25 F 1.35102 * 119.96160 * 179.72680 * 24 9 7 26 26 C 1.37910 * 120.07596 * 359.45136 * 24 9 7 27 27 H 1.09000 * 109.47442 * 299.99415 * 1 2 3 28 28 H 1.08999 * 109.47650 * 60.00100 * 1 2 3 29 29 H 1.09010 * 109.46665 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.04136 * 359.97438 * 6 5 3 31 31 H 1.09002 * 113.25611 * 342.95675 * 11 10 9 32 32 H 1.09000 * 113.47331 * 105.37574 * 12 11 10 33 33 H 1.08995 * 113.52785 * 334.91164 * 12 11 10 34 34 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 35 35 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 38 38 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 39 39 H 1.08007 * 120.03685 * 180.27067 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2197 0.0005 5 6 3.5364 1.2780 -0.0006 6 6 4.1726 2.5225 0.0000 7 6 5.5500 2.5909 0.0000 8 9 6.1659 3.7934 0.0010 9 6 6.3061 1.4232 0.0000 10 8 7.6623 1.4944 0.0005 11 6 8.3097 1.5281 1.2741 12 6 9.6372 2.2989 1.2842 13 7 10.1791 1.2479 2.1655 14 6 11.5539 0.8981 1.7838 15 6 12.1587 0.0114 2.8415 16 1 11.5800 -0.2645 3.7106 17 6 13.4515 -0.4470 2.7003 18 7 14.1565 -0.1107 1.6422 19 14 14.2014 -1.5456 4.0118 20 1 15.5911 -1.8992 3.6259 21 1 14.2156 -0.8266 5.3110 22 1 13.3934 -2.7848 4.1407 23 6 9.2092 0.3172 1.5589 24 6 5.6764 0.1828 -0.0062 25 9 6.4146 -0.9487 -0.0117 26 6 4.2994 0.1067 -0.0010 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.5863 3.4295 0.0004 31 1 7.6371 1.7865 2.0920 32 1 9.5687 3.2752 1.7640 33 1 10.1230 2.3415 0.3094 34 1 12.1473 1.8077 1.6892 35 1 11.5431 0.3706 0.8300 36 1 15.0660 -0.4328 1.5430 37 1 9.5803 -0.1697 0.6570 38 1 8.7781 -0.3860 2.2715 39 1 3.8111 -0.8567 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234011105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:17 Heat of formation + Delta-G solvation = -155.436255 kcal Electronic energy + Delta-G solvation = -27025.799066 eV Core-core repulsion = 22571.161837 eV Total energy + Delta-G solvation = -4454.637228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.20289 -50.15516 -41.82104 -41.43475 -39.99332 -38.23205 -37.51895 -35.05510 -32.18541 -31.77051 -31.00765 -28.62957 -27.34039 -26.93922 -25.42254 -24.28664 -23.65515 -22.34183 -21.19848 -19.95979 -19.46893 -19.00372 -18.53679 -18.02302 -17.71478 -17.46691 -17.39345 -16.87728 -16.83151 -16.50097 -16.44294 -16.24848 -15.92217 -15.73057 -14.92479 -14.61296 -14.47120 -14.39175 -14.21323 -13.90373 -13.80249 -13.73003 -13.24185 -13.03490 -12.96837 -12.91208 -12.66482 -12.41700 -12.20426 -11.89660 -11.84210 -11.76907 -11.31325 -10.96568 -10.63687 -10.21346 -10.12364 -9.81412 -8.24946 -6.35977 -1.03115 -0.35741 0.98164 1.39813 1.42086 1.43547 1.51700 1.92229 2.24342 2.38532 2.53543 2.96600 3.06868 3.16936 3.25587 3.40583 3.52191 3.64630 3.77498 3.89824 4.14735 4.32327 4.35294 4.38769 4.40169 4.42757 4.55260 4.57129 4.61025 4.73218 4.75685 4.79473 4.81695 4.99313 5.17344 5.19639 5.50535 5.69029 5.99248 6.08135 6.32395 6.48824 6.77202 7.33452 8.86272 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.002424 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.302857 B =11546.930721 C =12298.495295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.522 3.478 4 O -0.518 6.518 5 C -0.077 4.077 6 C -0.075 4.075 7 C 0.099 3.901 8 F -0.122 7.122 9 C 0.052 3.948 10 O -0.321 6.321 11 C 0.078 3.922 12 C -0.002 4.002 13 N -0.475 5.475 14 C 0.177 3.823 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.974 3.026 20 H -0.281 1.281 21 H -0.267 1.267 22 H -0.267 1.267 23 C -0.004 4.004 24 C 0.095 3.905 25 F -0.123 7.123 26 C -0.072 4.072 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.135 0.865 30 H 0.175 0.825 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.006 0.994 35 H -0.019 1.019 36 H 0.266 0.734 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.458 0.857 -4.486 29.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.367 3.633 4 O -0.409 6.409 5 C -0.079 4.079 6 C -0.094 4.094 7 C 0.079 3.921 8 F -0.100 7.100 9 C 0.005 3.995 10 O -0.237 6.237 11 C 0.023 3.977 12 C -0.130 4.130 13 N -0.199 5.199 14 C 0.050 3.950 15 C -0.567 4.567 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.798 3.202 20 H -0.206 1.206 21 H -0.192 1.192 22 H -0.192 1.192 23 C -0.133 4.133 24 C 0.075 3.925 25 F -0.101 7.101 26 C -0.091 4.091 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.153 0.847 30 H 0.193 0.807 31 H 0.143 0.857 32 H 0.123 0.877 33 H 0.082 0.918 34 H 0.024 0.976 35 H -0.002 1.002 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -29.274 1.213 -3.997 29.571 hybrid contribution 1.203 -0.433 -0.498 1.373 sum -28.071 0.780 -4.495 28.439 Atomic orbital electron populations 1.23678 0.73498 1.06202 1.03046 1.86543 1.25752 1.30878 1.83472 1.20642 0.88176 0.82009 0.72472 1.90884 1.66879 1.36774 1.46323 1.18555 0.89962 0.92883 1.06482 1.21251 0.91246 0.99776 0.97139 1.17449 0.90366 0.79914 1.04352 1.91573 1.83127 1.41636 1.93650 1.19279 0.84697 0.91580 1.03935 1.86179 1.14263 1.92893 1.30331 1.24318 0.92554 0.96976 0.83846 1.24136 0.92942 0.98685 0.97284 1.68932 1.03623 1.05287 1.42067 1.19936 0.85834 0.94914 0.94307 1.21370 0.98623 1.29998 1.06718 0.91992 1.25982 0.97490 0.98060 0.98283 1.70076 1.10776 1.46628 1.29894 0.85368 0.77177 0.78865 0.78811 1.20630 1.19174 1.19160 1.24271 0.93734 0.96700 0.98618 1.17681 0.89667 0.81116 1.04006 1.91589 1.77056 1.47925 1.93567 1.21583 0.89875 1.01320 0.96291 0.91448 0.91403 0.84713 0.80716 0.85719 0.87660 0.91807 0.97630 1.00161 0.92510 0.92303 0.89061 0.79408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 113.37 1.20 1.39 16 2 O -0.35 -4.23 9.81 -56.64 -0.56 -4.78 16 3 C 0.52 8.17 7.89 70.26 0.55 8.72 16 4 O -0.52 -10.49 16.13 19.82 0.32 -10.17 16 5 C -0.08 -1.17 5.87 -20.10 -0.12 -1.29 16 6 C -0.08 -1.23 9.56 22.56 0.22 -1.01 16 7 C 0.10 2.08 7.30 22.40 0.16 2.24 16 8 F -0.12 -2.88 17.10 44.97 0.77 -2.11 16 9 C 0.05 1.25 5.63 22.69 0.13 1.38 16 10 O -0.32 -9.83 9.82 -91.39 -0.90 -10.73 16 11 C 0.08 2.47 4.71 30.94 0.15 2.62 16 12 C 0.00 -0.06 7.52 83.58 0.63 0.57 16 13 N -0.48 -21.14 6.32 -932.86 -5.89 -27.04 16 14 C 0.18 9.69 4.57 85.55 0.39 10.08 16 15 C -0.53 -30.86 9.39 25.60 0.24 -30.62 16 16 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 17 C 0.00 0.00 5.46 84.66 0.46 0.47 16 18 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 19 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 C 0.00 -0.15 7.56 83.58 0.63 0.48 16 24 C 0.10 2.00 7.30 22.40 0.16 2.17 16 25 F -0.12 -3.08 17.10 44.97 0.77 -2.31 16 26 C -0.07 -1.05 9.58 22.57 0.22 -0.84 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.13 0.11 8.14 -2.38 -0.02 0.09 16 30 H 0.18 2.42 7.64 -2.91 -0.02 2.40 16 31 H 0.13 3.34 7.96 -2.39 -0.02 3.33 16 32 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 33 H 0.06 2.46 7.91 -2.39 -0.02 2.44 16 34 H 0.01 0.33 8.08 -2.38 -0.02 0.31 16 35 H -0.02 -1.14 7.30 -2.39 -0.02 -1.15 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.06 2.47 7.42 -2.39 -0.02 2.46 16 38 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.19 1.79 7.60 -2.91 -0.02 1.77 16 Total: -1.00 -70.47 354.06 2.94 -67.53 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.09 Total: 3.12 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 5.02 Total: -3.65 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -5.61 Total: -83.72 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -1.13 Total: -25.69 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 1.54 Total: -4.42 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -70.47 2.94 -67.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234011105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.905 kcal (2) G-P(sol) polarization free energy of solvation -70.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds