Wall clock time and date at job start Tue Mar 31 2020 15:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34768 * 117.00144 * 2 1 4 4 O 1.21534 * 119.99890 * 359.97438 * 3 2 1 5 5 C 1.47248 * 120.00491 * 179.97438 * 3 2 1 6 6 C 1.40052 * 120.20776 * 89.97009 * 5 3 2 7 7 F 1.35096 * 120.06690 * 0.05367 * 6 5 3 8 8 C 1.38075 * 119.87042 * 180.02562 * 6 5 3 9 9 C 1.38462 * 120.29518 * 0.02562 * 8 6 5 10 10 C 1.38271 * 120.42494 * 359.73800 * 9 8 6 11 11 F 1.35100 * 119.94233 * 180.28041 * 10 9 8 12 12 C 1.38822 * 120.11799 * 0.51191 * 10 9 8 13 13 O 1.35702 * 120.14574 * 179.76462 * 12 10 9 14 14 C 1.42895 * 117.00450 * 269.72489 * 13 12 10 15 15 C 1.53514 * 114.17121 * 210.00274 * 14 13 12 16 16 N 1.47483 * 87.92777 * 220.32774 * 15 14 13 17 17 C 1.46903 * 110.99717 * 138.70421 * 16 15 14 18 18 C 1.50694 * 109.47066 * 169.99804 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47480 * 87.83900 * 27.00973 * 16 15 14 27 27 H 1.08996 * 109.46808 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47297 * 300.00449 * 1 2 3 29 29 H 1.09000 * 109.46545 * 60.00383 * 1 2 3 30 30 H 1.07994 * 119.85150 * 180.02562 * 8 6 5 31 31 H 1.08002 * 119.78526 * 179.97438 * 9 8 6 32 32 H 1.09011 * 113.25486 * 342.95357 * 14 13 12 33 33 H 1.09000 * 113.47331 * 105.56452 * 15 14 13 34 34 H 1.08995 * 113.52785 * 335.10042 * 15 14 13 35 35 H 1.09007 * 109.47052 * 49.99488 * 17 16 15 36 36 H 1.09003 * 109.46808 * 290.00181 * 17 16 15 37 37 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 38 38 H 1.09004 * 113.47132 * 87.75237 * 26 16 15 39 39 H 1.09000 * 113.47538 * 218.21976 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5343 1.2779 0.0006 6 6 4.2385 1.3140 -1.2095 7 9 3.5700 1.2791 -2.3829 8 6 5.6174 1.3858 -1.2008 9 6 6.3074 1.4218 -0.0009 10 6 5.6243 1.3918 1.2008 11 9 6.3071 1.4331 2.3659 12 6 4.2382 1.3144 1.2125 13 8 3.5675 1.2801 2.3916 14 6 3.3125 -0.0078 2.9558 15 6 2.0300 -0.0832 3.7962 16 7 2.7716 -0.9231 4.7552 17 6 2.4471 -0.5534 6.1394 18 6 3.0233 -1.5789 7.0814 19 1 3.5750 -2.4212 6.6909 20 6 2.8453 -1.4423 8.4418 21 7 2.1730 -0.4168 8.9174 22 14 3.5589 -2.7138 9.6094 23 1 2.5622 -3.7906 9.8381 24 1 4.7892 -3.2960 9.0155 25 1 3.8928 -2.0655 10.9031 26 6 4.0048 -0.2517 4.3040 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 6.1601 1.4140 -2.1341 31 1 7.3860 1.4776 -0.0038 32 1 3.4250 -0.8215 2.2392 33 1 1.2150 -0.6087 3.2984 34 1 1.7226 0.8780 4.2080 35 1 1.3645 -0.5158 6.2612 36 1 2.8721 0.4251 6.3632 37 1 2.0475 -0.3209 9.8744 38 1 4.2251 0.6650 4.8511 39 1 4.8633 -0.9199 4.2368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234304362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:51 Heat of formation + Delta-G solvation = -131.417779 kcal Electronic energy + Delta-G solvation = -28041.405435 eV Core-core repulsion = 23587.809726 eV Total energy + Delta-G solvation = -4453.595709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.50500 -49.16256 -40.99369 -39.97292 -38.93853 -36.94177 -36.62716 -32.92166 -31.83497 -30.28796 -29.12617 -27.99192 -25.60253 -25.43512 -24.68750 -23.23565 -21.78172 -21.53960 -19.68353 -18.96240 -18.46482 -18.13420 -17.51644 -17.00869 -16.49969 -16.34968 -16.27193 -16.09432 -15.82741 -15.39682 -14.87576 -14.62075 -14.51359 -14.36597 -14.03893 -13.80744 -13.32790 -13.15823 -12.89829 -12.62585 -12.38818 -12.18611 -12.11075 -11.99813 -11.81321 -11.44062 -11.01661 -10.98130 -10.90310 -10.59629 -10.30485 -9.89680 -9.69505 -9.58806 -9.28709 -8.98877 -8.46942 -8.04197 -6.06360 -4.08135 0.15184 0.35243 1.72700 2.28195 2.59139 3.08856 3.31026 3.36698 3.40950 3.62196 3.79265 4.10188 4.27190 4.38909 4.41319 4.61601 4.71300 4.79639 4.92888 5.03412 5.07695 5.15469 5.28328 5.29266 5.34684 5.38668 5.45338 5.66589 5.91971 5.96755 6.00575 6.07894 6.21828 6.23757 6.46167 7.10845 7.20135 7.34520 7.57036 7.78083 8.03065 8.37753 8.98830 9.56037 11.04756 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.003256 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.596451 B = 8596.235555 C = 9754.120815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.346 6.346 3 C 0.525 3.475 4 O -0.478 6.478 5 C -0.142 4.142 6 C 0.142 3.858 7 F -0.122 7.122 8 C -0.133 4.133 9 C -0.091 4.091 10 C 0.079 3.921 11 F -0.114 7.114 12 C 0.143 3.857 13 O -0.311 6.311 14 C 0.050 3.950 15 C 0.001 3.999 16 N -0.458 5.458 17 C 0.161 3.839 18 C -0.507 4.507 19 H 0.064 0.936 20 C 0.055 3.945 21 N -0.899 5.899 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.273 1.273 25 H -0.287 1.287 26 C 0.001 3.999 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.007 0.993 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 3.135 -23.519 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.262 6.262 3 C 0.366 3.634 4 O -0.364 6.364 5 C -0.145 4.145 6 C 0.122 3.878 7 F -0.101 7.101 8 C -0.151 4.151 9 C -0.110 4.110 10 C 0.059 3.941 11 F -0.092 7.092 12 C 0.096 3.904 13 O -0.227 6.227 14 C -0.005 4.005 15 C -0.128 4.128 16 N -0.183 5.183 17 C 0.035 3.965 18 C -0.545 4.545 19 H 0.082 0.918 20 C -0.147 4.147 21 N -0.538 5.538 22 Si 0.729 3.271 23 H -0.206 1.206 24 H -0.198 1.198 25 H -0.213 1.213 26 C -0.128 4.128 27 H 0.126 0.874 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.796 2.925 -23.188 23.859 hybrid contribution 0.147 0.279 0.878 0.932 sum 4.943 3.204 -22.311 23.075 Atomic orbital electron populations 1.23406 0.75199 1.04362 1.02958 1.86648 1.24190 1.31718 1.83600 1.20434 0.87908 0.82344 0.72737 1.90907 1.65915 1.36016 1.43544 1.19235 0.91333 1.10894 0.92989 1.17293 0.89916 1.01010 0.79564 1.91570 1.80604 1.93385 1.44499 1.20915 0.91164 1.03121 0.99929 1.21132 1.01866 0.98440 0.89534 1.17842 0.88463 1.04930 0.82881 1.91604 1.78731 1.93443 1.45419 1.18307 0.88555 0.97827 0.85669 1.86190 1.73662 1.30918 1.31919 1.24747 0.99450 0.81984 0.94313 1.24103 0.95841 0.98326 0.94545 1.69063 1.01703 1.41003 1.06511 1.20300 0.97336 0.95945 0.82901 1.21069 1.34212 1.08913 0.90345 0.91753 1.25011 0.95438 0.95885 0.98345 1.69958 1.41094 1.29334 1.13446 0.86448 0.79449 0.81234 0.79999 1.20587 1.19784 1.21257 1.24276 0.96887 0.98976 0.92677 0.87415 0.91177 0.91691 0.82342 0.82282 0.87661 0.89806 0.90849 0.95051 0.97502 0.92829 0.90445 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 101.05 1.07 1.40 16 2 O -0.35 -4.40 10.58 -40.68 -0.43 -4.83 16 3 C 0.52 7.54 6.57 34.39 0.23 7.77 16 4 O -0.48 -7.95 16.90 -19.29 -0.33 -8.27 16 5 C -0.14 -1.82 5.77 -104.82 -0.60 -2.42 16 6 C 0.14 1.45 7.29 -38.96 -0.28 1.16 16 7 F -0.12 -1.29 16.83 2.25 0.04 -1.25 16 8 C -0.13 -0.93 10.00 -39.56 -0.40 -1.33 16 9 C -0.09 -0.68 10.00 -39.49 -0.39 -1.07 16 10 C 0.08 0.90 7.30 -39.35 -0.29 0.61 16 11 F -0.11 -1.48 17.11 2.25 0.04 -1.44 16 12 C 0.14 1.93 5.63 -38.63 -0.22 1.71 16 13 O -0.31 -5.03 9.42 -18.81 -0.18 -5.21 16 14 C 0.05 0.81 4.71 -26.20 -0.12 0.69 16 15 C 0.00 0.02 7.52 -7.53 -0.06 -0.04 16 16 N -0.46 -9.95 6.32 -246.08 -1.55 -11.51 16 17 C 0.16 4.22 4.57 -4.98 -0.02 4.20 16 18 C -0.51 -14.43 9.39 -34.44 -0.32 -14.76 16 19 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 20 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 22 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 C 0.00 0.02 7.55 -7.54 -0.06 -0.04 16 27 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.11 1.55 7.96 -51.92 -0.41 1.13 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.39 7.91 -51.93 -0.41 0.98 16 35 H 0.03 0.87 8.08 -51.92 -0.42 0.45 16 36 H 0.01 0.20 7.30 -51.93 -0.38 -0.18 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.08 1.57 7.42 -51.93 -0.39 1.18 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -33.31 355.23 -7.42 -40.73 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -4.51 Total: -3.54 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.57 Total: -0.66 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.82 Total: -37.61 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.93 Total: -18.31 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.08 Total: -2.69 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.31 -7.42 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234304362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.686 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds