Wall clock time and date at job start Tue Mar 31 2020 15:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34768 * 117.00144 * 2 1 4 4 O 1.21534 * 119.99890 * 359.97438 * 3 2 1 5 5 C 1.47248 * 120.00491 * 179.97438 * 3 2 1 6 6 C 1.40052 * 120.20776 * 89.97009 * 5 3 2 7 7 F 1.35096 * 120.06690 * 0.05367 * 6 5 3 8 8 C 1.38075 * 119.87042 * 180.02562 * 6 5 3 9 9 C 1.38462 * 120.29518 * 0.02562 * 8 6 5 10 10 C 1.38271 * 120.42494 * 359.73800 * 9 8 6 11 11 F 1.35100 * 119.94233 * 180.28041 * 10 9 8 12 12 C 1.38822 * 120.11799 * 0.51191 * 10 9 8 13 13 O 1.35702 * 120.14574 * 179.76462 * 12 10 9 14 14 C 1.42895 * 117.00450 * 269.72489 * 13 12 10 15 15 C 1.53514 * 114.17121 * 210.00274 * 14 13 12 16 16 N 1.47483 * 87.92777 * 220.32774 * 15 14 13 17 17 C 1.46903 * 110.99717 * 138.70421 * 16 15 14 18 18 C 1.50694 * 109.47066 * 169.99804 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47480 * 87.83900 * 27.00973 * 16 15 14 27 27 H 1.08996 * 109.46808 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47297 * 300.00449 * 1 2 3 29 29 H 1.09000 * 109.46545 * 60.00383 * 1 2 3 30 30 H 1.07994 * 119.85150 * 180.02562 * 8 6 5 31 31 H 1.08002 * 119.78526 * 179.97438 * 9 8 6 32 32 H 1.09011 * 113.25486 * 342.95357 * 14 13 12 33 33 H 1.09000 * 113.47331 * 105.56452 * 15 14 13 34 34 H 1.08995 * 113.52785 * 335.10042 * 15 14 13 35 35 H 1.09007 * 109.47052 * 49.99488 * 17 16 15 36 36 H 1.09003 * 109.46808 * 290.00181 * 17 16 15 37 37 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 38 38 H 1.09004 * 113.47132 * 87.75237 * 26 16 15 39 39 H 1.09000 * 113.47538 * 218.21976 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5343 1.2779 0.0006 6 6 4.2385 1.3140 -1.2095 7 9 3.5700 1.2791 -2.3829 8 6 5.6174 1.3858 -1.2008 9 6 6.3074 1.4218 -0.0009 10 6 5.6243 1.3918 1.2008 11 9 6.3071 1.4331 2.3659 12 6 4.2382 1.3144 1.2125 13 8 3.5675 1.2801 2.3916 14 6 3.3125 -0.0078 2.9558 15 6 2.0300 -0.0832 3.7962 16 7 2.7716 -0.9231 4.7552 17 6 2.4471 -0.5534 6.1394 18 6 3.0233 -1.5789 7.0814 19 1 3.5750 -2.4212 6.6909 20 6 2.8453 -1.4423 8.4418 21 7 2.1730 -0.4168 8.9174 22 14 3.5589 -2.7138 9.6094 23 1 2.5622 -3.7906 9.8381 24 1 4.7892 -3.2960 9.0155 25 1 3.8928 -2.0655 10.9031 26 6 4.0048 -0.2517 4.3040 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 6.1601 1.4140 -2.1341 31 1 7.3860 1.4776 -0.0038 32 1 3.4250 -0.8215 2.2392 33 1 1.2150 -0.6087 3.2984 34 1 1.7226 0.8780 4.2080 35 1 1.3645 -0.5158 6.2612 36 1 2.8721 0.4251 6.3632 37 1 2.0475 -0.3209 9.8744 38 1 4.2251 0.6650 4.8511 39 1 4.8633 -0.9199 4.2368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234304362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:51 Heat of formation + Delta-G solvation = -154.312791 kcal Electronic energy + Delta-G solvation = -28042.398237 eV Core-core repulsion = 23587.809726 eV Total energy + Delta-G solvation = -4454.588511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.29430 -50.07603 -42.06476 -41.28581 -40.03746 -38.07955 -37.67993 -35.06321 -32.71370 -31.52759 -30.61454 -28.82676 -27.35690 -26.99441 -25.66498 -24.32156 -23.39388 -22.52376 -21.23039 -19.98126 -19.41134 -19.02640 -18.61897 -18.51276 -17.92167 -17.44810 -17.26294 -17.04950 -16.92821 -16.58261 -16.35071 -15.98694 -15.84697 -15.55441 -14.95904 -14.87764 -14.49181 -14.37889 -14.20052 -14.03924 -13.81818 -13.40619 -13.35599 -13.29158 -12.93269 -12.79673 -12.77799 -12.41540 -12.22943 -11.97240 -11.95438 -11.80216 -11.31567 -11.02145 -10.64809 -10.43715 -9.93382 -9.76349 -8.25684 -6.36956 -0.64768 -0.45125 0.66274 1.39931 1.40124 1.41962 1.53485 1.73784 2.15930 2.38303 2.80593 2.90698 3.06290 3.15884 3.23396 3.35126 3.53823 3.62926 3.76228 3.84060 4.16876 4.20893 4.25436 4.35481 4.44663 4.47913 4.51618 4.58596 4.64347 4.69167 4.71848 4.79359 4.82814 4.98064 5.02819 5.33726 5.48335 5.67376 5.97446 6.05729 6.29830 6.30808 6.76614 7.32823 8.85958 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.003256 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.596451 B = 8596.235555 C = 9754.120815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.349 6.349 3 C 0.522 3.478 4 O -0.513 6.513 5 C -0.161 4.161 6 C 0.138 3.862 7 F -0.125 7.125 8 C -0.101 4.101 9 C -0.065 4.065 10 C 0.067 3.933 11 F -0.128 7.128 12 C 0.110 3.890 13 O -0.329 6.329 14 C 0.079 3.921 15 C -0.002 4.002 16 N -0.469 5.469 17 C 0.176 3.824 18 C -0.528 4.528 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.935 5.935 22 Si 0.975 3.025 23 H -0.271 1.271 24 H -0.263 1.263 25 H -0.281 1.281 26 C -0.002 4.002 27 H 0.138 0.862 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.206 0.794 31 H 0.202 0.798 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.005 0.995 36 H -0.021 1.021 37 H 0.266 0.734 38 H 0.057 0.943 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.584 1.877 -25.701 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C 0.365 3.635 4 O -0.402 6.402 5 C -0.163 4.163 6 C 0.118 3.882 7 F -0.104 7.104 8 C -0.119 4.119 9 C -0.083 4.083 10 C 0.047 3.953 11 F -0.107 7.107 12 C 0.064 3.936 13 O -0.245 6.245 14 C 0.023 3.977 15 C -0.131 4.131 16 N -0.193 5.193 17 C 0.049 3.951 18 C -0.566 4.566 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.575 5.575 22 Si 0.799 3.201 23 H -0.196 1.196 24 H -0.187 1.187 25 H -0.206 1.206 26 C -0.131 4.131 27 H 0.156 0.844 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.223 0.777 31 H 0.219 0.781 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.023 0.977 36 H -0.003 1.003 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.121 1.656 -25.402 26.433 hybrid contribution -0.567 0.724 1.393 1.669 sum 6.554 2.380 -24.008 25.000 Atomic orbital electron populations 1.23703 0.73764 1.06374 1.02913 1.86647 1.25732 1.31046 1.83068 1.20866 0.88776 0.82227 0.71650 1.90877 1.66880 1.37054 1.45377 1.19287 0.90496 1.12577 0.93982 1.17553 0.91050 1.01105 0.78524 1.91568 1.80988 1.93410 1.44394 1.21443 0.89552 0.99363 1.01589 1.21603 1.03699 0.95327 0.87700 1.18141 0.87713 1.05717 0.83775 1.91570 1.78787 1.93690 1.46616 1.18510 0.89506 1.00934 0.84666 1.86151 1.74398 1.30412 1.33580 1.24348 0.96525 0.83253 0.93537 1.24119 0.97458 0.97310 0.94234 1.68937 1.03864 1.42036 1.04448 1.19952 0.95235 0.94263 0.85635 1.21394 1.34581 1.09309 0.91321 0.91826 1.25986 0.95551 0.98026 1.00176 1.70089 1.42147 1.31227 1.14053 0.85299 0.78986 0.78405 0.77432 1.19610 1.18712 1.20608 1.24252 0.96434 0.98135 0.94275 0.84366 0.92137 0.90920 0.77707 0.78070 0.85528 0.87844 0.92428 0.97690 1.00307 0.92515 0.92433 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 16 2 O -0.35 -8.80 10.58 -56.79 -0.60 -9.40 16 3 C 0.52 15.13 6.57 70.19 0.46 15.59 16 4 O -0.51 -17.64 16.90 19.72 0.33 -17.30 16 5 C -0.16 -3.99 5.77 -19.99 -0.12 -4.11 16 6 C 0.14 2.44 7.29 22.67 0.17 2.61 16 7 F -0.13 -2.36 16.83 44.97 0.76 -1.61 16 8 C -0.10 -0.93 10.00 22.28 0.22 -0.70 16 9 C -0.07 -0.68 10.00 22.33 0.22 -0.45 16 10 C 0.07 1.38 7.30 22.42 0.16 1.55 16 11 F -0.13 -3.21 17.11 44.97 0.77 -2.44 16 12 C 0.11 2.90 5.63 22.89 0.13 3.03 16 13 O -0.33 -10.92 9.42 -90.22 -0.85 -11.77 16 14 C 0.08 2.59 4.71 30.94 0.15 2.74 16 15 C 0.00 -0.08 7.52 83.58 0.63 0.55 16 16 N -0.47 -21.06 6.32 -932.86 -5.89 -26.95 16 17 C 0.18 9.72 4.57 85.55 0.39 10.11 16 18 C -0.53 -30.83 9.39 25.60 0.24 -30.59 16 19 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 20 C 0.00 0.04 5.46 84.66 0.46 0.51 16 21 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 22 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 C 0.00 -0.07 7.55 83.58 0.63 0.56 16 27 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.21 0.07 8.06 -2.91 -0.02 0.05 16 31 H 0.20 0.47 8.06 -2.91 -0.02 0.44 16 32 H 0.13 3.61 7.96 -2.38 -0.02 3.60 16 33 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.06 2.35 7.91 -2.39 -0.02 2.33 16 35 H 0.01 0.30 8.08 -2.38 -0.02 0.28 16 36 H -0.02 -1.24 7.30 -2.39 -0.02 -1.26 16 37 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.06 2.48 7.42 -2.39 -0.02 2.46 16 39 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -76.47 355.23 2.87 -73.61 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.09 Total: 3.01 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 4.95 Total: 3.06 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -5.61 Total: -83.93 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -1.12 Total: -38.47 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 1.53 Total: -4.05 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -76.47 2.87 -73.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234304362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.707 kcal (2) G-P(sol) polarization free energy of solvation -76.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds